EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFHEG00000018000 (Gene tree)
Gene ID: 105933162
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Plus strand
Length: 12174 bases
Position: chrKN811402.1:1221993-1234166
Accession: 105933162
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000016269	RRM_1	PF00076.22	1.8e-60	1	4
ENSFHEP00000016269	RRM_1	PF00076.22	1.8e-60	2	4
ENSFHEP00000016269	RRM_1	PF00076.22	1.8e-60	3	4
ENSFHEP00000016269	RRM_1	PF00076.22	1.8e-60	4	4
ENSFHEP00000016282	RRM_1	PF00076.22	3.2e-60	1	4
ENSFHEP00000016282	RRM_1	PF00076.22	3.2e-60	2	4
ENSFHEP00000016282	RRM_1	PF00076.22	3.2e-60	3	4
ENSFHEP00000016282	RRM_1	PF00076.22	3.2e-60	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000033528	-	5998	XM_012872572	ENSFHEP00000016282	644 (aa)	XP_012728026	-
ENSFHET00000033523	-	1716	-	ENSFHEP00000016269	571 (aa)	-	-

Gene Model

Click here to download ENSFHEG00000018000's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000018000's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFHEG00000018000	ncl	60	31.928	ENSFHEG00000008186	pabpc1b	56	31.928
ENSFHEG00000018000	ncl	60	31.928	ENSFHEG00000018979	pabpc1a	59	32.117
ENSFHEG00000018000	ncl	61	30.723	ENSFHEG00000007548	pabpc4	60	32.061
ENSFHEG00000018000	ncl	60	31.818	ENSFHEG00000003398	pabpc1l	64	32.530
ENSFHEG00000018000	ncl	70	40.865	ENSFHEG00000017265	-	82	41.470

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000018000	ncl	72	80.000	ENSAPOG00000023888	ncl	66	80.000	Acanthochromis_polyacanthus
ENSFHEG00000018000	ncl	65	42.092	ENSAPOG00000014534	-	67	41.117	Acanthochromis_polyacanthus
ENSFHEG00000018000	ncl	85	65.462	ENSACIG00000013234	ncl	62	75.733	Amphilophus_citrinellus
ENSFHEG00000018000	ncl	72	39.535	ENSAOCG00000014792	-	61	40.827	Amphiprion_ocellaris
ENSFHEG00000018000	ncl	65	79.621	ENSAOCG00000003133	ncl	53	80.000	Amphiprion_ocellaris
ENSFHEG00000018000	ncl	72	39.302	ENSAPEG00000013612	-	60	40.568	Amphiprion_percula
ENSFHEG00000018000	ncl	72	80.048	ENSAPEG00000002769	ncl	53	80.000	Amphiprion_percula
ENSFHEG00000018000	ncl	84	68.802	ENSATEG00000013343	ncl	60	79.762	Anabas_testudineus
ENSFHEG00000018000	ncl	69	45.652	ENSATEG00000019862	-	80	45.736	Anabas_testudineus
ENSFHEG00000018000	ncl	60	57.835	ENSAPLG00000012897	-	63	58.115	Anas_platyrhynchos
ENSFHEG00000018000	ncl	60	63.456	ENSACAG00000001006	-	52	61.518	Anolis_carolinensis
ENSFHEG00000018000	ncl	61	74.919	ENSACLG00000026031	ncl	85	75.658	Astatotilapia_calliptera
ENSFHEG00000018000	ncl	61	65.217	ENSAMXG00000001647	ncl	84	66.333	Astyanax_mexicanus
ENSFHEG00000018000	ncl	60	41.026	ENSCHIG00000012665	-	56	39.599	Capra_hircus
ENSFHEG00000018000	ncl	54	47.511	ENSCHIG00000003401	-	52	46.222	Capra_hircus
ENSFHEG00000018000	ncl	66	55.778	ENSCPBG00000016444	-	52	60.745	Chrysemys_picta_bellii
ENSFHEG00000018000	ncl	75	75.072	ENSCSEG00000015089	ncl	57	76.781	Cynoglossus_semilaevis
ENSFHEG00000018000	ncl	66	76.178	ENSCVAG00000012600	ncl	67	82.133	Cyprinodon_variegatus
ENSFHEG00000018000	ncl	65	70.686	ENSDARG00000002710	ncl	83	73.701	Danio_rerio
ENSFHEG00000018000	ncl	88	44.498	ENSDNOG00000040257	-	58	45.869	Dasypus_novemcinctus
ENSFHEG00000018000	ncl	68	42.199	ENSDNOG00000031611	-	66	41.053	Dasypus_novemcinctus
ENSFHEG00000018000	ncl	87	45.957	ENSEBUG00000016173	ncl	55	44.651	Eptatretus_burgeri
ENSFHEG00000018000	ncl	70	46.944	ENSELUG00000022826	-	80	49.866	Esox_lucius
ENSFHEG00000018000	ncl	65	72.235	ENSELUG00000006033	ncl	56	71.958	Esox_lucius
ENSFHEG00000018000	ncl	60	56.338	ENSFALG00000007592	-	55	56.736	Ficedula_albicollis
ENSFHEG00000018000	ncl	62	67.324	ENSGMOG00000001341	ncl	56	66.954	Gadus_morhua
ENSFHEG00000018000	ncl	60	58.974	ENSGALG00000032930	NCL	55	58.486	Gallus_gallus
ENSFHEG00000018000	ncl	72	80.349	ENSGAFG00000015375	ncl	63	81.067	Gambusia_affinis
ENSFHEG00000018000	ncl	65	72.684	ENSGACG00000008970	ncl	60	75.806	Gasterosteus_aculeatus
ENSFHEG00000018000	ncl	73	60.417	ENSGAGG00000013330	-	56	60.052	Gopherus_agassizii
ENSFHEG00000018000	ncl	65	76.303	ENSHBUG00000006869	ncl	71	77.027	Haplochromis_burtoni
ENSFHEG00000018000	ncl	73	75.234	ENSHCOG00000010234	ncl	60	75.701	Hippocampus_comes
ENSFHEG00000018000	ncl	58	66.139	ENSIPUG00000024556	ncl	81	67.647	Ictalurus_punctatus
ENSFHEG00000018000	ncl	65	77.857	ENSLBEG00000019073	ncl	56	79.200	Labrus_bergylta
ENSFHEG00000018000	ncl	70	40.899	ENSLBEG00000007915	-	66	43.959	Labrus_bergylta
ENSFHEG00000018000	ncl	65	43.112	ENSLBEG00000014278	-	82	43.396	Labrus_bergylta
ENSFHEG00000018000	ncl	74	47.541	ENSLACG00000022167	-	79	52.279	Latimeria_chalumnae
ENSFHEG00000018000	ncl	75	58.161	ENSLACG00000009328	ncl	74	63.926	Latimeria_chalumnae
ENSFHEG00000018000	ncl	72	64.354	ENSLOCG00000004828	ncl	56	64.634	Lepisosteus_oculatus
ENSFHEG00000018000	ncl	64	40.979	ENSMAMG00000003479	-	69	40.674	Mastacembelus_armatus
ENSFHEG00000018000	ncl	72	76.757	ENSMZEG00005017438	ncl	67	76.757	Maylandia_zebra
ENSFHEG00000018000	ncl	62	58.974	ENSMGAG00000008147	-	89	58.108	Meleagris_gallopavo
ENSFHEG00000018000	ncl	63	75.350	ENSMMOG00000008553	ncl	86	77.987	Mola_mola
ENSFHEG00000018000	ncl	60	55.211	ENSMODG00000002470	-	58	49.522	Monodelphis_domestica
ENSFHEG00000018000	ncl	74	66.730	ENSMALG00000014827	ncl	58	77.020	Monopterus_albus
ENSFHEG00000018000	ncl	60	41.967	ENSMPUG00000001663	-	66	42.532	Mustela_putorius_furo
ENSFHEG00000018000	ncl	61	76.596	ENSNBRG00000001232	ncl	82	78.014	Neolamprologus_brichardi
ENSFHEG00000018000	ncl	61	76.596	ENSNBRG00000000146	-	86	78.014	Neolamprologus_brichardi
ENSFHEG00000018000	ncl	71	56.283	ENSMEUG00000012335	-	63	52.620	Notamacropus_eugenii
ENSFHEG00000018000	ncl	60	76.081	ENSONIG00000012508	ncl	67	77.027	Oreochromis_niloticus
ENSFHEG00000018000	ncl	59	44.162	ENSONIG00000010631	-	97	44.615	Oreochromis_niloticus
ENSFHEG00000018000	ncl	67	56.489	ENSOANG00000008732	-	61	59.231	Ornithorhynchus_anatinus
ENSFHEG00000018000	ncl	65	75.000	ENSORLG00000007055	ncl	51	77.867	Oryzias_latipes
ENSFHEG00000018000	ncl	71	35.664	ENSORLG00000004645	-	83	38.760	Oryzias_latipes
ENSFHEG00000018000	ncl	72	77.143	ENSORLG00020017943	ncl	51	77.867	Oryzias_latipes_hni
ENSFHEG00000018000	ncl	63	37.203	ENSORLG00020003497	-	74	38.501	Oryzias_latipes_hni
ENSFHEG00000018000	ncl	61	80.528	ENSORLG00015013815	ncl	87	80.528	Oryzias_latipes_hsok
ENSFHEG00000018000	ncl	63	38.786	ENSORLG00015006613	-	77	39.164	Oryzias_latipes_hsok
ENSFHEG00000018000	ncl	63	37.135	ENSOMEG00000015864	-	82	37.143	Oryzias_melastigma
ENSFHEG00000018000	ncl	79	72.104	ENSPKIG00000002604	ncl	70	73.529	Paramormyrops_kingsleyae
ENSFHEG00000018000	ncl	60	60.734	ENSPSIG00000002361	-	54	59.021	Pelodiscus_sinensis
ENSFHEG00000018000	ncl	65	72.922	ENSPMGG00000004709	ncl	86	73.041	Periophthalmus_magnuspinnatus
ENSFHEG00000018000	ncl	60	56.056	ENSPCIG00000003293	-	54	54.872	Phascolarctos_cinereus
ENSFHEG00000018000	ncl	85	79.521	ENSPLAG00000024026	ncl	64	80.533	Poecilia_latipinna
ENSFHEG00000018000	ncl	72	76.757	ENSPNYG00000020494	ncl	67	76.757	Pundamilia_nyererei
ENSFHEG00000018000	ncl	65	67.062	ENSPNAG00000006192	ncl	52	67.460	Pygocentrus_nattereri
ENSFHEG00000018000	ncl	60	51.714	ENSSHAG00000002702	-	59	51.295	Sarcophilus_harrisii
ENSFHEG00000018000	ncl	72	69.952	ENSSFOG00015008583	ncl	75	75.401	Scleropages_formosus
ENSFHEG00000018000	ncl	62	44.321	ENSSFOG00015013153	-	76	46.580	Scleropages_formosus
ENSFHEG00000018000	ncl	71	40.557	ENSSMAG00000007582	-	61	46.053	Scophthalmus_maximus
ENSFHEG00000018000	ncl	65	75.177	ENSSMAG00000021241	ncl	67	75.177	Scophthalmus_maximus
ENSFHEG00000018000	ncl	77	37.381	ENSSDUG00000010922	-	70	42.708	Seriola_dumerili
ENSFHEG00000018000	ncl	84	79.858	ENSSDUG00000006128	ncl	86	79.467	Seriola_dumerili
ENSFHEG00000018000	ncl	66	79.009	ENSSLDG00000002012	ncl	53	78.933	Seriola_lalandi_dorsalis
ENSFHEG00000018000	ncl	63	43.536	ENSSLDG00000015784	-	65	42.670	Seriola_lalandi_dorsalis
ENSFHEG00000018000	ncl	85	57.816	ENSSPUG00000008244	-	61	58.458	Sphenodon_punctatus
ENSFHEG00000018000	ncl	71	42.043	ENSSPAG00000001859	-	61	42.298	Stegastes_partitus
ENSFHEG00000018000	ncl	72	75.419	ENSSPAG00000002637	ncl	100	78.212	Stegastes_partitus
ENSFHEG00000018000	ncl	77	58.115	ENSTGUG00000009782	-	60	58.377	Taeniopygia_guttata
ENSFHEG00000018000	ncl	73	73.660	ENSTRUG00000008185	ncl	80	76.596	Takifugu_rubripes
ENSFHEG00000018000	ncl	55	76.190	ENSTNIG00000012186	ncl	84	76.000	Tetraodon_nigroviridis
ENSFHEG00000018000	ncl	60	62.963	ENSXETG00000009517	ncl	54	63.130	Xenopus_tropicalis
ENSFHEG00000018000	ncl	65	39.062	ENSXCOG00000007369	-	89	40.000	Xiphophorus_couchianus
ENSFHEG00000018000	ncl	61	51.070	ENSXCOG00000003524	ncl	89	64.267	Xiphophorus_couchianus
ENSFHEG00000018000	ncl	73	81.304	ENSXMAG00000005914	ncl	51	82.400	Xiphophorus_maculatus