EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFHEG00000018508 (Gene tree)
Gene ID: 105926863
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Plus strand
Length: 8125 bases
Position: chrKN811302.1:2347073-2355197
Accession: 105926863
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000032171	SMN	PF06003.12	3.2e-110	1	1
ENSFHEP00000016822	SMN	PF06003.12	7.2e-109	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000033745	-	2835	-	ENSFHEP00000016822	269 (aa)	-	-
ENSFHET00000025303	-	1919	XM_012863349	ENSFHEP00000032171	276 (aa)	XP_012718803	-

Gene Model

Click here to download ENSFHEG00000018508's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000018508's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000018508	smn1	96	50.000	ENSG00000205571	SMN2	70	71.875	Homo_sapiens
ENSFHEG00000018508	smn1	96	50.000	ENSG00000172062	SMN1	68	56.180	Homo_sapiens
ENSFHEG00000018508	smn1	100	81.159	ENSAPOG00000011324	smn1	97	81.159	Acanthochromis_polyacanthus
ENSFHEG00000018508	smn1	96	50.362	ENSAMEG00000003316	-	59	51.892	Ailuropoda_melanoleuca
ENSFHEG00000018508	smn1	63	78.824	ENSACIG00000007598	smn1	93	79.412	Amphilophus_citrinellus
ENSFHEG00000018508	smn1	93	74.609	ENSACIG00000019772	-	97	74.609	Amphilophus_citrinellus
ENSFHEG00000018508	smn1	100	80.797	ENSAOCG00000024444	smn1	97	80.797	Amphiprion_ocellaris
ENSFHEG00000018508	smn1	100	81.159	ENSAPEG00000016504	smn1	97	81.159	Amphiprion_percula
ENSFHEG00000018508	smn1	95	81.749	ENSATEG00000002182	smn1	80	81.749	Anabas_testudineus
ENSFHEG00000018508	smn1	100	50.883	ENSACAG00000010017	-	95	49.470	Anolis_carolinensis
ENSFHEG00000018508	smn1	96	50.725	ENSANAG00000032133	-	91	49.442	Aotus_nancymaae
ENSFHEG00000018508	smn1	99	78.731	ENSACLG00000007308	smn1	91	79.182	Astatotilapia_calliptera
ENSFHEG00000018508	smn1	100	59.928	ENSAMXG00000013884	smn1	97	64.158	Astyanax_mexicanus
ENSFHEG00000018508	smn1	96	52.574	ENSBTAG00000005743	SMN2	62	52.247	Bos_taurus
ENSFHEG00000018508	smn1	96	51.311	ENSCJAG00000016290	-	87	46.212	Callithrix_jacchus
ENSFHEG00000018508	smn1	96	51.273	ENSCAFG00000007812	SMN	62	53.591	Canis_familiaris
ENSFHEG00000018508	smn1	96	51.273	ENSCAFG00020019229	-	58	53.591	Canis_lupus_dingo
ENSFHEG00000018508	smn1	96	51.460	ENSCHIG00000015559	-	60	52.247	Capra_hircus
ENSFHEG00000018508	smn1	96	52.381	ENSTSYG00000012058	-	69	56.111	Carlito_syrichta
ENSFHEG00000018508	smn1	77	46.479	ENSCAPG00000011021	-	54	48.333	Cavia_aperea
ENSFHEG00000018508	smn1	97	50.709	ENSCPOG00000012328	-	62	51.630	Cavia_porcellus
ENSFHEG00000018508	smn1	96	50.896	ENSCPOG00000036973	-	61	52.198	Cavia_porcellus
ENSFHEG00000018508	smn1	96	50.562	ENSCCAG00000018127	-	91	50.186	Cebus_capucinus
ENSFHEG00000018508	smn1	96	51.636	ENSCATG00000037002	-	68	56.742	Cercocebus_atys
ENSFHEG00000018508	smn1	96	49.270	ENSCLAG00000000284	-	90	45.455	Chinchilla_lanigera
ENSFHEG00000018508	smn1	96	50.923	ENSCSAG00000015688	-	61	57.303	Chlorocebus_sabaeus
ENSFHEG00000018508	smn1	54	57.534	ENSCHOG00000007346	-	68	52.941	Choloepus_hoffmanni
ENSFHEG00000018508	smn1	97	52.708	ENSCPBG00000010968	-	97	50.936	Chrysemys_picta_bellii
ENSFHEG00000018508	smn1	96	51.648	ENSCANG00000038242	-	68	57.303	Colobus_angolensis_palliatus
ENSFHEG00000018508	smn1	96	47.744	ENSCANG00000033324	-	88	46.863	Colobus_angolensis_palliatus
ENSFHEG00000018508	smn1	96	51.636	ENSCGRG00001017959	-	61	54.494	Cricetulus_griseus_chok1gshd
ENSFHEG00000018508	smn1	74	44.500	ENSCGRG00001016998	-	91	35.401	Cricetulus_griseus_chok1gshd
ENSFHEG00000018508	smn1	96	51.636	ENSCGRG00000007698	Smn1	61	54.494	Cricetulus_griseus_crigri
ENSFHEG00000018508	smn1	97	66.187	ENSCSEG00000015227	smn1	97	64.982	Cynoglossus_semilaevis
ENSFHEG00000018508	smn1	100	88.448	ENSCVAG00000007498	smn1	97	88.448	Cyprinodon_variegatus
ENSFHEG00000018508	smn1	100	63.309	ENSDARG00000018494	smn1	97	61.429	Danio_rerio
ENSFHEG00000018508	smn1	87	45.679	ENSDNOG00000007283	-	97	43.515	Dasypus_novemcinctus
ENSFHEG00000018508	smn1	60	49.701	ENSDNOG00000045949	-	76	47.778	Dasypus_novemcinctus
ENSFHEG00000018508	smn1	93	43.774	ENSDORG00000007082	Smn1	60	43.503	Dipodomys_ordii
ENSFHEG00000018508	smn1	95	40.143	ENSEBUG00000011902	smn1	62	43.478	Eptatretus_burgeri
ENSFHEG00000018508	smn1	94	45.385	ENSEASG00005018000	-	89	44.922	Equus_asinus_asinus
ENSFHEG00000018508	smn1	96	50.000	ENSECAG00000015215	-	92	49.630	Equus_caballus
ENSFHEG00000018508	smn1	93	50.570	ENSEEUG00000015777	-	100	47.510	Erinaceus_europaeus
ENSFHEG00000018508	smn1	97	66.292	ENSELUG00000018067	smn1	97	64.855	Esox_lucius
ENSFHEG00000018508	smn1	96	50.542	ENSFCAG00000028292	SMN	69	54.190	Felis_catus
ENSFHEG00000018508	smn1	99	53.623	ENSFALG00000012320	-	95	54.212	Ficedula_albicollis
ENSFHEG00000018508	smn1	97	45.775	ENSFDAG00000017683	-	91	43.206	Fukomys_damarensis
ENSFHEG00000018508	smn1	100	62.681	ENSGMOG00000017279	smn1	95	63.043	Gadus_morhua
ENSFHEG00000018508	smn1	97	52.878	ENSGALG00000002430	SMN	56	63.226	Gallus_gallus
ENSFHEG00000018508	smn1	100	89.493	ENSGAFG00000009501	smn1	97	89.493	Gambusia_affinis
ENSFHEG00000018508	smn1	100	78.623	ENSGACG00000010584	smn1	94	76.812	Gasterosteus_aculeatus
ENSFHEG00000018508	smn1	97	34.921	ENSGAGG00000013639	-	93	34.058	Gopherus_agassizii
ENSFHEG00000018508	smn1	97	52.941	ENSGAGG00000011374	-	93	51.986	Gopherus_agassizii
ENSFHEG00000018508	smn1	93	50.000	ENSGGOG00000003872	-	72	56.180	Gorilla_gorilla
ENSFHEG00000018508	smn1	56	60.510	ENSGGOG00000026704	-	84	56.180	Gorilla_gorilla
ENSFHEG00000018508	smn1	100	78.623	ENSHBUG00000013987	smn1	97	78.986	Haplochromis_burtoni
ENSFHEG00000018508	smn1	97	49.275	ENSHGLG00000001018	-	62	51.630	Heterocephalus_glaber_female
ENSFHEG00000018508	smn1	97	49.275	ENSHGLG00100011252	-	62	51.630	Heterocephalus_glaber_male
ENSFHEG00000018508	smn1	93	74.806	ENSHCOG00000017136	smn1	86	74.419	Hippocampus_comes
ENSFHEG00000018508	smn1	100	62.724	ENSIPUG00000012580	smn1	86	59.498	Ictalurus_punctatus
ENSFHEG00000018508	smn1	93	50.566	ENSSTOG00000012288	-	66	53.005	Ictidomys_tridecemlineatus
ENSFHEG00000018508	smn1	100	79.928	ENSKMAG00000007239	smn1	99	79.705	Kryptolebias_marmoratus
ENSFHEG00000018508	smn1	100	79.422	ENSLBEG00000022550	smn1	98	79.401	Labrus_bergylta
ENSFHEG00000018508	smn1	95	33.216	ENSLACG00000009808	-	88	36.879	Latimeria_chalumnae
ENSFHEG00000018508	smn1	100	53.929	ENSLOCG00000011339	smn1	97	54.286	Lepisosteus_oculatus
ENSFHEG00000018508	smn1	97	32.281	ENSLOCG00000000801	-	91	31.119	Lepisosteus_oculatus
ENSFHEG00000018508	smn1	97	50.000	ENSLAFG00000003425	-	99	36.517	Loxodonta_africana
ENSFHEG00000018508	smn1	96	51.292	ENSMFAG00000031523	SMN1	68	57.303	Macaca_fascicularis
ENSFHEG00000018508	smn1	96	48.708	ENSMFAG00000008812	-	61	55.056	Macaca_fascicularis
ENSFHEG00000018508	smn1	96	47.970	ENSMMUG00000030594	-	61	53.933	Macaca_mulatta
ENSFHEG00000018508	smn1	96	51.292	ENSMMUG00000020214	SMN1	68	57.303	Macaca_mulatta
ENSFHEG00000018508	smn1	96	51.292	ENSMNEG00000035094	-	68	57.303	Macaca_nemestrina
ENSFHEG00000018508	smn1	96	52.000	ENSMLEG00000041902	-	68	57.303	Mandrillus_leucophaeus
ENSFHEG00000018508	smn1	100	80.505	ENSMAMG00000011034	smn1	97	80.505	Mastacembelus_armatus
ENSFHEG00000018508	smn1	100	78.986	ENSMZEG00005013634	smn1	97	79.348	Maylandia_zebra
ENSFHEG00000018508	smn1	73	49.254	ENSMGAG00000008889	-	94	46.078	Meleagris_gallopavo
ENSFHEG00000018508	smn1	96	52.000	ENSMAUG00000010262	Smn1	61	54.444	Mesocricetus_auratus
ENSFHEG00000018508	smn1	90	46.988	ENSMICG00000034708	-	80	56.180	Microcebus_murinus
ENSFHEG00000018508	smn1	96	52.364	ENSMOCG00000017833	Smn1	61	55.682	Microtus_ochrogaster
ENSFHEG00000018508	smn1	96	69.925	ENSMMOG00000005504	smn1	94	68.561	Mola_mola
ENSFHEG00000018508	smn1	97	53.986	ENSMODG00000001436	-	91	52.747	Monodelphis_domestica
ENSFHEG00000018508	smn1	100	82.310	ENSMALG00000008025	smn1	97	82.310	Monopterus_albus
ENSFHEG00000018508	smn1	96	50.182	MGP_CAROLIEiJ_G0018836	Smn1	61	54.494	Mus_caroli
ENSFHEG00000018508	smn1	96	49.818	ENSMUSG00000021645	Smn1	61	53.933	Mus_musculus
ENSFHEG00000018508	smn1	97	51.119	MGP_PahariEiJ_G0015911	Smn1	56	55.233	Mus_pahari
ENSFHEG00000018508	smn1	96	50.545	MGP_SPRETEiJ_G0019718	Smn1	61	53.933	Mus_spretus
ENSFHEG00000018508	smn1	95	50.554	ENSMPUG00000014470	-	64	55.556	Mustela_putorius_furo
ENSFHEG00000018508	smn1	97	50.000	ENSNGAG00000019833	Smn1	58	52.601	Nannospalax_galili
ENSFHEG00000018508	smn1	100	80.435	ENSNBRG00000023000	smn1	97	80.797	Neolamprologus_brichardi
ENSFHEG00000018508	smn1	96	50.370	ENSNLEG00000004454	-	68	56.742	Nomascus_leucogenys
ENSFHEG00000018508	smn1	71	51.256	ENSMEUG00000011393	-	88	47.317	Notamacropus_eugenii
ENSFHEG00000018508	smn1	93	50.965	ENSOPRG00000002015	-	68	53.216	Ochotona_princeps
ENSFHEG00000018508	smn1	93	50.566	ENSODEG00000015976	-	62	53.297	Octodon_degus
ENSFHEG00000018508	smn1	100	80.797	ENSONIG00000011799	smn1	97	80.797	Oreochromis_niloticus
ENSFHEG00000018508	smn1	97	49.643	ENSOANG00000001626	-	94	49.265	Ornithorhynchus_anatinus
ENSFHEG00000018508	smn1	96	52.000	ENSOCUG00000026649	-	91	49.097	Oryctolagus_cuniculus
ENSFHEG00000018508	smn1	96	52.222	ENSOCUG00000017097	-	91	49.632	Oryctolagus_cuniculus
ENSFHEG00000018508	smn1	100	79.710	ENSORLG00000010552	smn1	97	80.072	Oryzias_latipes
ENSFHEG00000018508	smn1	100	73.551	ENSORLG00020007936	smn1	97	73.188	Oryzias_latipes_hni
ENSFHEG00000018508	smn1	100	79.710	ENSORLG00015022425	smn1	97	80.072	Oryzias_latipes_hsok
ENSFHEG00000018508	smn1	100	79.348	ENSOMEG00000007824	smn1	97	79.348	Oryzias_melastigma
ENSFHEG00000018508	smn1	93	45.956	ENSOGAG00000031414	-	91	47.191	Otolemur_garnettii
ENSFHEG00000018508	smn1	96	51.504	ENSOARG00000005425	-	65	50.562	Ovis_aries
ENSFHEG00000018508	smn1	96	48.889	ENSPPAG00000036640	-	68	56.180	Pan_paniscus
ENSFHEG00000018508	smn1	96	50.542	ENSPPRG00000005575	-	69	54.190	Panthera_pardus
ENSFHEG00000018508	smn1	96	49.097	ENSPTIG00000007745	-	69	54.190	Panthera_tigris_altaica
ENSFHEG00000018508	smn1	96	50.534	ENSPTRG00000016955	-	92	51.527	Pan_troglodytes
ENSFHEG00000018508	smn1	96	49.446	ENSPANG00000000253	-	65	55.618	Papio_anubis
ENSFHEG00000018508	smn1	96	51.292	ENSPANG00000013601	-	68	57.303	Papio_anubis
ENSFHEG00000018508	smn1	100	58.214	ENSPKIG00000011096	smn1	97	58.123	Paramormyrops_kingsleyae
ENSFHEG00000018508	smn1	96	51.673	ENSPSIG00000014787	-	83	49.446	Pelodiscus_sinensis
ENSFHEG00000018508	smn1	100	68.100	ENSPMGG00000012285	smn1	94	69.231	Periophthalmus_magnuspinnatus
ENSFHEG00000018508	smn1	97	53.986	ENSPCIG00000025764	-	92	52.941	Phascolarctos_cinereus
ENSFHEG00000018508	smn1	100	88.768	ENSPFOG00000007786	smn1	97	88.768	Poecilia_formosa
ENSFHEG00000018508	smn1	100	89.130	ENSPLAG00000012071	smn1	97	89.130	Poecilia_latipinna
ENSFHEG00000018508	smn1	100	88.768	ENSPMEG00000017085	smn1	97	88.768	Poecilia_mexicana
ENSFHEG00000018508	smn1	100	88.768	ENSPREG00000005824	smn1	97	88.768	Poecilia_reticulata
ENSFHEG00000018508	smn1	62	73.077	ENSPPYG00000019189	-	74	46.259	Pongo_abelii
ENSFHEG00000018508	smn1	96	49.071	ENSPPYG00000015533	-	62	54.651	Pongo_abelii
ENSFHEG00000018508	smn1	96	48.339	ENSPCAG00000004187	-	65	49.730	Procavia_capensis
ENSFHEG00000018508	smn1	67	49.721	ENSPCOG00000022307	-	75	53.571	Propithecus_coquereli
ENSFHEG00000018508	smn1	96	51.087	ENSPVAG00000005977	-	61	54.696	Pteropus_vampyrus
ENSFHEG00000018508	smn1	100	80.435	ENSPNYG00000014148	smn1	97	80.797	Pundamilia_nyererei
ENSFHEG00000018508	smn1	100	61.957	ENSPNAG00000014007	smn1	85	61.232	Pygocentrus_nattereri
ENSFHEG00000018508	smn1	97	50.542	ENSRNOG00000018067	Smn1	61	53.371	Rattus_norvegicus
ENSFHEG00000018508	smn1	96	50.923	ENSRBIG00000037052	-	68	57.303	Rhinopithecus_bieti
ENSFHEG00000018508	smn1	94	48.669	ENSRBIG00000036775	-	88	48.092	Rhinopithecus_bieti
ENSFHEG00000018508	smn1	96	50.923	ENSRROG00000039399	-	68	57.303	Rhinopithecus_roxellana
ENSFHEG00000018508	smn1	97	47.407	ENSRROG00000031088	-	58	57.051	Rhinopithecus_roxellana
ENSFHEG00000018508	smn1	96	52.768	ENSSBOG00000011665	-	91	49.814	Saimiri_boliviensis_boliviensis
ENSFHEG00000018508	smn1	54	56.376	ENSSBOG00000020112	-	60	53.216	Saimiri_boliviensis_boliviensis
ENSFHEG00000018508	smn1	96	54.545	ENSSHAG00000001499	-	97	51.471	Sarcophilus_harrisii
ENSFHEG00000018508	smn1	100	60.498	ENSSFOG00015015507	smn1	97	55.000	Scleropages_formosus
ENSFHEG00000018508	smn1	100	76.449	ENSSMAG00000007922	smn1	97	76.449	Scophthalmus_maximus
ENSFHEG00000018508	smn1	100	83.755	ENSSDUG00000018533	smn1	97	84.477	Seriola_dumerili
ENSFHEG00000018508	smn1	100	84.116	ENSSLDG00000021135	smn1	97	84.838	Seriola_lalandi_dorsalis
ENSFHEG00000018508	smn1	97	54.286	ENSSPUG00000000373	-	96	52.297	Sphenodon_punctatus
ENSFHEG00000018508	smn1	100	80.797	ENSSPAG00000004345	smn1	97	80.797	Stegastes_partitus
ENSFHEG00000018508	smn1	96	39.080	ENSSSCG00000029127	-	67	68.750	Sus_scrofa
ENSFHEG00000018508	smn1	96	50.542	ENSSSCG00000016970	-	61	54.144	Sus_scrofa
ENSFHEG00000018508	smn1	93	50.355	ENSTGUG00000001548	-	95	49.270	Taeniopygia_guttata
ENSFHEG00000018508	smn1	100	66.667	ENSTRUG00000000736	smn	97	68.116	Takifugu_rubripes
ENSFHEG00000018508	smn1	100	65.724	ENSTNIG00000009892	smn1	97	67.491	Tetraodon_nigroviridis
ENSFHEG00000018508	smn1	55	60.897	ENSTBEG00000002399	-	86	54.190	Tupaia_belangeri
ENSFHEG00000018508	smn1	96	49.814	ENSTTRG00000005080	-	90	50.000	Tursiops_truncatus
ENSFHEG00000018508	smn1	55	60.000	ENSUAMG00000024947	-	66	55.307	Ursus_americanus
ENSFHEG00000018508	smn1	56	77.778	ENSVPAG00000009887	-	55	82.609	Vicugna_pacos
ENSFHEG00000018508	smn1	96	51.273	ENSVVUG00000006934	-	62	53.591	Vulpes_vulpes
ENSFHEG00000018508	smn1	97	54.545	ENSXETG00000018189	smn2	94	49.306	Xenopus_tropicalis
ENSFHEG00000018508	smn1	100	88.406	ENSXMAG00000001521	smn1	97	88.406	Xiphophorus_maculatus