EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFHEG00000019652 (Gene tree)
Gene ID: 105937655
Gene Symbol: a1cf
Alias: acf
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Minus strand
Length: 36053 bases
Position: chrKN811518.1:507360-543412
Accession: 105937655
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000032874	DND1_DSRM	PF14709.7	6.6e-26	1	1
ENSFHEP00000032874	RRM_1	PF00076.22	4.7e-33	1	3
ENSFHEP00000032874	RRM_1	PF00076.22	4.7e-33	2	3
ENSFHEP00000032874	RRM_1	PF00076.22	4.7e-33	3	3
ENSFHEP00000017830	RRM_1	PF00076.22	4.1e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000026625	-	881	-	ENSFHEP00000017830	134 (aa)	-	-
ENSFHET00000026652	-	1752	XM_012879090	ENSFHEP00000032874	583 (aa)	XP_012734544	-

Gene Model

Click here to download ENSFHEG00000019652's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000019652's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFHEG00000019652	a1cf	83	57.018	ENSFHEG00000012955	syncripl	52	46.075
ENSFHEG00000019652	a1cf	85	65.625	ENSFHEG00000013257	rbm46	81	65.625
ENSFHEG00000019652	a1cf	83	52.632	ENSFHEG00000012603	hnrnpr	65	40.541
ENSFHEG00000019652	a1cf	82	43.636	ENSFHEG00000000128	-	52	30.081
ENSFHEG00000019652	a1cf	93	58.400	ENSFHEG00000007938	rbm47	79	47.467

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000019652	a1cf	96	82.031	ENSG00000148584	A1CF	100	72.277	Homo_sapiens
ENSFHEG00000019652	a1cf	96	89.844	ENSAPOG00000008259	a1cf	100	79.043	Acanthochromis_polyacanthus
ENSFHEG00000019652	a1cf	96	82.031	ENSAMEG00000000523	A1CF	100	69.870	Ailuropoda_melanoleuca
ENSFHEG00000019652	a1cf	96	91.406	ENSACIG00000008632	a1cf	100	85.008	Amphilophus_citrinellus
ENSFHEG00000019652	a1cf	96	90.625	ENSAOCG00000023744	a1cf	100	81.561	Amphiprion_ocellaris
ENSFHEG00000019652	a1cf	96	89.844	ENSAPEG00000009537	a1cf	100	80.328	Amphiprion_percula
ENSFHEG00000019652	a1cf	67	93.333	ENSATEG00000013677	-	82	93.333	Anabas_testudineus
ENSFHEG00000019652	a1cf	96	91.406	ENSATEG00000013720	a1cf	100	85.479	Anabas_testudineus
ENSFHEG00000019652	a1cf	96	84.375	ENSAPLG00000002964	A1CF	100	68.123	Anas_platyrhynchos
ENSFHEG00000019652	a1cf	96	83.594	ENSACAG00000015269	A1CF	100	70.909	Anolis_carolinensis
ENSFHEG00000019652	a1cf	96	82.031	ENSANAG00000019974	A1CF	100	71.452	Aotus_nancymaae
ENSFHEG00000019652	a1cf	96	92.188	ENSACLG00000017428	a1cf	100	81.095	Astatotilapia_calliptera
ENSFHEG00000019652	a1cf	100	77.129	ENSAMXG00000018180	a1cf	100	76.127	Astyanax_mexicanus
ENSFHEG00000019652	a1cf	96	82.812	ENSBTAG00000021195	A1CF	100	71.452	Bos_taurus
ENSFHEG00000019652	a1cf	96	82.031	ENSCJAG00000005045	A1CF	100	70.358	Callithrix_jacchus
ENSFHEG00000019652	a1cf	96	82.031	ENSCAFG00000015581	A1CF	100	69.707	Canis_familiaris
ENSFHEG00000019652	a1cf	96	82.031	ENSCAFG00020026421	A1CF	98	82.667	Canis_lupus_dingo
ENSFHEG00000019652	a1cf	96	82.812	ENSCHIG00000020411	A1CF	100	70.684	Capra_hircus
ENSFHEG00000019652	a1cf	90	76.471	ENSTSYG00000001755	A1CF	92	74.953	Carlito_syrichta
ENSFHEG00000019652	a1cf	100	78.395	ENSCAPG00000017386	A1CF	100	81.293	Cavia_aperea
ENSFHEG00000019652	a1cf	96	81.250	ENSCPOG00000009807	A1CF	100	69.055	Cavia_porcellus
ENSFHEG00000019652	a1cf	96	82.031	ENSCCAG00000018168	A1CF	100	70.195	Cebus_capucinus
ENSFHEG00000019652	a1cf	96	82.031	ENSCATG00000043715	A1CF	100	70.792	Cercocebus_atys
ENSFHEG00000019652	a1cf	96	81.250	ENSCLAG00000010424	A1CF	100	68.567	Chinchilla_lanigera
ENSFHEG00000019652	a1cf	96	82.031	ENSCSAG00000007032	A1CF	100	69.870	Chlorocebus_sabaeus
ENSFHEG00000019652	a1cf	90	76.705	ENSCHOG00000009089	A1CF	86	75.000	Choloepus_hoffmanni
ENSFHEG00000019652	a1cf	96	84.375	ENSCPBG00000026464	A1CF	100	68.893	Chrysemys_picta_bellii
ENSFHEG00000019652	a1cf	96	82.031	ENSCANG00000038032	A1CF	100	69.870	Colobus_angolensis_palliatus
ENSFHEG00000019652	a1cf	96	82.812	ENSCGRG00001017413	A1cf	100	69.381	Cricetulus_griseus_chok1gshd
ENSFHEG00000019652	a1cf	96	82.812	ENSCGRG00000017332	A1cf	100	68.842	Cricetulus_griseus_crigri
ENSFHEG00000019652	a1cf	96	86.719	ENSCSEG00000002361	a1cf	100	78.675	Cynoglossus_semilaevis
ENSFHEG00000019652	a1cf	96	96.094	ENSCVAG00000010520	a1cf	100	90.264	Cyprinodon_variegatus
ENSFHEG00000019652	a1cf	96	85.938	ENSDARG00000002968	a1cf	100	75.415	Danio_rerio
ENSFHEG00000019652	a1cf	96	82.812	ENSDNOG00000002829	A1CF	100	69.870	Dasypus_novemcinctus
ENSFHEG00000019652	a1cf	92	85.366	ENSDORG00000025837	-	100	85.366	Dipodomys_ordii
ENSFHEG00000019652	a1cf	73	90.521	ENSETEG00000012527	A1CF	71	90.521	Echinops_telfairi
ENSFHEG00000019652	a1cf	96	82.812	ENSEASG00005012924	A1CF	100	70.407	Equus_asinus_asinus
ENSFHEG00000019652	a1cf	96	82.812	ENSECAG00000010424	A1CF	100	70.081	Equus_caballus
ENSFHEG00000019652	a1cf	82	68.067	ENSEEUG00000000013	A1CF	97	67.249	Erinaceus_europaeus
ENSFHEG00000019652	a1cf	96	88.281	ENSELUG00000003159	a1cf	100	73.301	Esox_lucius
ENSFHEG00000019652	a1cf	96	82.031	ENSFCAG00000011179	A1CF	100	70.957	Felis_catus
ENSFHEG00000019652	a1cf	96	83.594	ENSFALG00000013183	A1CF	100	70.000	Ficedula_albicollis
ENSFHEG00000019652	a1cf	96	82.031	ENSFDAG00000019371	A1CF	100	69.967	Fukomys_damarensis
ENSFHEG00000019652	a1cf	100	76.391	ENSGMOG00000018943	a1cf	100	74.705	Gadus_morhua
ENSFHEG00000019652	a1cf	90	74.953	ENSGALG00000003765	A1CF	88	73.084	Gallus_gallus
ENSFHEG00000019652	a1cf	96	96.094	ENSGAFG00000014868	a1cf	100	80.033	Gambusia_affinis
ENSFHEG00000019652	a1cf	100	82.890	ENSGACG00000010241	a1cf	100	81.894	Gasterosteus_aculeatus
ENSFHEG00000019652	a1cf	90	74.953	ENSGAGG00000016508	A1CF	89	72.897	Gopherus_agassizii
ENSFHEG00000019652	a1cf	96	82.031	ENSGGOG00000009670	A1CF	100	69.707	Gorilla_gorilla
ENSFHEG00000019652	a1cf	96	91.406	ENSHBUG00000021959	a1cf	100	83.306	Haplochromis_burtoni
ENSFHEG00000019652	a1cf	96	82.031	ENSHGLG00000008955	A1CF	100	68.730	Heterocephalus_glaber_female
ENSFHEG00000019652	a1cf	96	82.031	ENSHGLG00100000518	A1CF	100	68.078	Heterocephalus_glaber_male
ENSFHEG00000019652	a1cf	96	85.156	ENSHCOG00000017669	a1cf	100	69.132	Hippocampus_comes
ENSFHEG00000019652	a1cf	96	87.500	ENSIPUG00000010367	a1cf	95	75.551	Ictalurus_punctatus
ENSFHEG00000019652	a1cf	92	84.553	ENSSTOG00000005763	-	100	84.553	Ictidomys_tridecemlineatus
ENSFHEG00000019652	a1cf	92	84.553	ENSJJAG00000011550	-	100	84.553	Jaculus_jaculus
ENSFHEG00000019652	a1cf	96	89.062	ENSKMAG00000006568	a1cf	100	81.481	Kryptolebias_marmoratus
ENSFHEG00000019652	a1cf	96	89.844	ENSLBEG00000020994	a1cf	99	81.997	Labrus_bergylta
ENSFHEG00000019652	a1cf	96	85.156	ENSLACG00000008061	A1CF	100	71.617	Latimeria_chalumnae
ENSFHEG00000019652	a1cf	96	88.281	ENSLOCG00000006302	a1cf	100	73.453	Lepisosteus_oculatus
ENSFHEG00000019652	a1cf	96	83.594	ENSLAFG00000015462	A1CF	100	70.684	Loxodonta_africana
ENSFHEG00000019652	a1cf	96	82.031	ENSMFAG00000035948	A1CF	100	70.792	Macaca_fascicularis
ENSFHEG00000019652	a1cf	96	82.031	ENSMMUG00000007077	A1CF	100	70.792	Macaca_mulatta
ENSFHEG00000019652	a1cf	96	82.031	ENSMNEG00000031454	A1CF	100	70.627	Macaca_nemestrina
ENSFHEG00000019652	a1cf	96	82.031	ENSMLEG00000037223	A1CF	100	69.870	Mandrillus_leucophaeus
ENSFHEG00000019652	a1cf	96	91.406	ENSMAMG00000010402	a1cf	100	81.342	Mastacembelus_armatus
ENSFHEG00000019652	a1cf	96	92.188	ENSMZEG00005013245	a1cf	100	78.827	Maylandia_zebra
ENSFHEG00000019652	a1cf	96	85.156	ENSMGAG00000001507	A1CF	100	67.690	Meleagris_gallopavo
ENSFHEG00000019652	a1cf	96	82.031	ENSMAUG00000007422	A1cf	100	69.055	Mesocricetus_auratus
ENSFHEG00000019652	a1cf	96	82.031	ENSMICG00000003377	A1CF	100	71.382	Microcebus_murinus
ENSFHEG00000019652	a1cf	96	82.812	ENSMOCG00000021536	A1cf	100	69.381	Microtus_ochrogaster
ENSFHEG00000019652	a1cf	100	77.834	ENSMMOG00000009422	a1cf	100	76.780	Mola_mola
ENSFHEG00000019652	a1cf	96	85.156	ENSMODG00000016478	A1CF	97	71.508	Monodelphis_domestica
ENSFHEG00000019652	a1cf	96	89.844	ENSMALG00000012992	a1cf	100	73.279	Monopterus_albus
ENSFHEG00000019652	a1cf	96	82.031	MGP_CAROLIEiJ_G0022873	A1cf	100	69.967	Mus_caroli
ENSFHEG00000019652	a1cf	96	82.031	ENSMUSG00000052595	A1cf	99	82.000	Mus_musculus
ENSFHEG00000019652	a1cf	96	81.250	MGP_PahariEiJ_G0014366	A1cf	100	68.977	Mus_pahari
ENSFHEG00000019652	a1cf	96	82.031	MGP_SPRETEiJ_G0023792	A1cf	100	69.702	Mus_spretus
ENSFHEG00000019652	a1cf	100	65.798	ENSMPUG00000016971	A1CF	100	64.495	Mustela_putorius_furo
ENSFHEG00000019652	a1cf	96	82.812	ENSMLUG00000016071	A1CF	100	70.033	Myotis_lucifugus
ENSFHEG00000019652	a1cf	96	82.031	ENSNGAG00000015136	A1cf	100	69.870	Nannospalax_galili
ENSFHEG00000019652	a1cf	96	92.188	ENSNBRG00000001712	a1cf	100	84.020	Neolamprologus_brichardi
ENSFHEG00000019652	a1cf	96	82.031	ENSNLEG00000012028	A1CF	100	70.358	Nomascus_leucogenys
ENSFHEG00000019652	a1cf	90	76.471	ENSMEUG00000015909	A1CF	92	73.814	Notamacropus_eugenii
ENSFHEG00000019652	a1cf	96	79.688	ENSOPRG00000010667	A1CF	100	60.568	Ochotona_princeps
ENSFHEG00000019652	a1cf	92	84.553	ENSODEG00000012177	-	100	84.553	Octodon_degus
ENSFHEG00000019652	a1cf	96	92.188	ENSONIG00000019105	a1cf	100	83.361	Oreochromis_niloticus
ENSFHEG00000019652	a1cf	96	82.812	ENSOANG00000007360	A1CF	99	71.368	Ornithorhynchus_anatinus
ENSFHEG00000019652	a1cf	96	81.250	ENSOCUG00000011587	A1CF	100	70.462	Oryctolagus_cuniculus
ENSFHEG00000019652	a1cf	96	90.625	ENSORLG00000013342	a1cf	100	79.180	Oryzias_latipes
ENSFHEG00000019652	a1cf	96	90.625	ENSORLG00020000586	a1cf	100	81.301	Oryzias_latipes_hni
ENSFHEG00000019652	a1cf	96	90.625	ENSORLG00015018569	a1cf	100	81.301	Oryzias_latipes_hsok
ENSFHEG00000019652	a1cf	96	89.844	ENSOMEG00000013531	a1cf	100	81.848	Oryzias_melastigma
ENSFHEG00000019652	a1cf	96	82.031	ENSOGAG00000012884	A1CF	100	69.544	Otolemur_garnettii
ENSFHEG00000019652	a1cf	96	82.812	ENSOARG00000013695	A1CF	100	70.358	Ovis_aries
ENSFHEG00000019652	a1cf	96	82.031	ENSPPAG00000028115	A1CF	99	71.765	Pan_paniscus
ENSFHEG00000019652	a1cf	96	82.031	ENSPPRG00000012180	A1CF	100	70.033	Panthera_pardus
ENSFHEG00000019652	a1cf	96	82.031	ENSPTIG00000021223	A1CF	100	70.033	Panthera_tigris_altaica
ENSFHEG00000019652	a1cf	96	82.031	ENSPTRG00000002508	A1CF	100	70.627	Pan_troglodytes
ENSFHEG00000019652	a1cf	96	82.031	ENSPANG00000021988	A1CF	100	70.792	Papio_anubis
ENSFHEG00000019652	a1cf	96	85.156	ENSPKIG00000025176	a1cf	100	73.770	Paramormyrops_kingsleyae
ENSFHEG00000019652	a1cf	96	84.375	ENSPSIG00000010318	A1CF	100	69.637	Pelodiscus_sinensis
ENSFHEG00000019652	a1cf	96	84.375	ENSPMGG00000013359	a1cf	99	64.587	Periophthalmus_magnuspinnatus
ENSFHEG00000019652	a1cf	96	82.812	ENSPEMG00000015021	A1cf	100	69.381	Peromyscus_maniculatus_bairdii
ENSFHEG00000019652	a1cf	96	83.594	ENSPCIG00000002175	A1CF	100	69.967	Phascolarctos_cinereus
ENSFHEG00000019652	a1cf	96	96.094	ENSPFOG00000007437	-	100	87.948	Poecilia_formosa
ENSFHEG00000019652	a1cf	96	96.094	ENSPFOG00000006683	a1cf	100	87.948	Poecilia_formosa
ENSFHEG00000019652	a1cf	96	96.094	ENSPLAG00000001210	-	100	89.274	Poecilia_latipinna
ENSFHEG00000019652	a1cf	96	96.094	ENSPLAG00000000026	a1cf	100	89.274	Poecilia_latipinna
ENSFHEG00000019652	a1cf	96	96.094	ENSPMEG00000000921	a1cf	100	78.852	Poecilia_mexicana
ENSFHEG00000019652	a1cf	96	96.094	ENSPMEG00000015529	-	100	77.832	Poecilia_mexicana
ENSFHEG00000019652	a1cf	96	95.312	ENSPREG00000016298	a1cf	100	87.459	Poecilia_reticulata
ENSFHEG00000019652	a1cf	96	82.031	ENSPPYG00000002819	A1CF	100	71.287	Pongo_abelii
ENSFHEG00000019652	a1cf	82	60.707	ENSPCAG00000006463	A1CF	79	59.252	Procavia_capensis
ENSFHEG00000019652	a1cf	96	82.031	ENSPCOG00000024172	A1CF	100	70.195	Propithecus_coquereli
ENSFHEG00000019652	a1cf	96	92.188	ENSPNYG00000017944	a1cf	100	82.927	Pundamilia_nyererei
ENSFHEG00000019652	a1cf	96	87.500	ENSPNAG00000007704	a1cf	100	75.327	Pygocentrus_nattereri
ENSFHEG00000019652	a1cf	96	82.812	ENSRNOG00000033195	A1cf	100	69.802	Rattus_norvegicus
ENSFHEG00000019652	a1cf	100	70.050	ENSRBIG00000042892	A1CF	100	73.704	Rhinopithecus_bieti
ENSFHEG00000019652	a1cf	96	82.031	ENSRROG00000041398	A1CF	100	69.870	Rhinopithecus_roxellana
ENSFHEG00000019652	a1cf	96	82.031	ENSSBOG00000021930	A1CF	100	75.530	Saimiri_boliviensis_boliviensis
ENSFHEG00000019652	a1cf	96	84.375	ENSSHAG00000005096	A1CF	100	69.802	Sarcophilus_harrisii
ENSFHEG00000019652	a1cf	96	85.938	ENSSFOG00015011774	a1cf	100	75.534	Scleropages_formosus
ENSFHEG00000019652	a1cf	96	89.062	ENSSMAG00000013271	a1cf	100	81.981	Scophthalmus_maximus
ENSFHEG00000019652	a1cf	96	90.625	ENSSDUG00000013930	a1cf	100	83.443	Seriola_dumerili
ENSFHEG00000019652	a1cf	96	90.625	ENSSLDG00000004290	a1cf	100	77.907	Seriola_lalandi_dorsalis
ENSFHEG00000019652	a1cf	90	68.121	ENSSARG00000005940	A1CF	87	67.552	Sorex_araneus
ENSFHEG00000019652	a1cf	90	74.393	ENSSPUG00000006797	A1CF	86	72.336	Sphenodon_punctatus
ENSFHEG00000019652	a1cf	93	93.548	ENSSPAG00000017066	-	84	93.548	Stegastes_partitus
ENSFHEG00000019652	a1cf	96	82.812	ENSSSCG00000010431	A1CF	100	71.173	Sus_scrofa
ENSFHEG00000019652	a1cf	96	83.594	ENSTGUG00000005090	A1CF	100	69.628	Taeniopygia_guttata
ENSFHEG00000019652	a1cf	96	88.281	ENSTRUG00000001982	a1cf	100	79.483	Takifugu_rubripes
ENSFHEG00000019652	a1cf	96	89.062	ENSTNIG00000003580	a1cf	100	79.221	Tetraodon_nigroviridis
ENSFHEG00000019652	a1cf	90	73.055	ENSTTRG00000013190	A1CF	86	71.537	Tursiops_truncatus
ENSFHEG00000019652	a1cf	96	82.031	ENSUAMG00000020065	A1CF	100	70.627	Ursus_americanus
ENSFHEG00000019652	a1cf	96	81.250	ENSUMAG00000011162	A1CF	100	69.381	Ursus_maritimus
ENSFHEG00000019652	a1cf	90	75.330	ENSVPAG00000006130	A1CF	86	73.635	Vicugna_pacos
ENSFHEG00000019652	a1cf	96	82.031	ENSVVUG00000002504	A1CF	100	70.792	Vulpes_vulpes
ENSFHEG00000019652	a1cf	96	82.812	ENSXETG00000006611	a1cf	100	64.754	Xenopus_tropicalis
ENSFHEG00000019652	a1cf	96	95.312	ENSXCOG00000003302	a1cf	100	87.954	Xiphophorus_couchianus
ENSFHEG00000019652	a1cf	96	95.312	ENSXMAG00000016703	a1cf	100	86.808	Xiphophorus_maculatus