EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFHEG00000019848 (Gene tree)
Gene ID: 105917391
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain zinc finger protein 1-like
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Plus strand
Length: 9211 bases
Position: chrKN805767.1:191842-201052
Accession: 105917391
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000032974	zf-C2H2	PF00096.26	3.3e-19	1	3
ENSFHEP00000032974	zf-C2H2	PF00096.26	3.3e-19	2	3
ENSFHEP00000032974	zf-C2H2	PF00096.26	3.3e-19	3	3
ENSFHEP00000032993	zf-C2H2	PF00096.26	3.7e-19	1	3
ENSFHEP00000032993	zf-C2H2	PF00096.26	3.7e-19	2	3
ENSFHEP00000032993	zf-C2H2	PF00096.26	3.7e-19	3	3
ENSFHEP00000032993	zf-met	PF12874.7	6.1e-06	1	1
ENSFHEP00000032974	zf-met	PF12874.7	3.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000026846	-	3364	XM_021310388	ENSFHEP00000032974	609 (aa)	XP_021166063	UPI000B3A1AEA
ENSFHET00000027305	-	1872	-	ENSFHEP00000032993	623 (aa)	-	-
ENSFHET00000026861	-	1327	XM_012852186	ENSFHEP00000018005	442 (aa)	XP_012707640	-

Gene Model

Click here to download ENSFHEG00000019848's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000019848's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000019848	prdm1b	72	72.146	ENSAPOG00000022084	prdm1b	93	73.349	Acanthochromis_polyacanthus
ENSFHEG00000019848	prdm1b	96	37.781	ENSAPOG00000014135	-	81	37.781	Acanthochromis_polyacanthus
ENSFHEG00000019848	prdm1b	97	75.497	ENSACIG00000014426	prdm1b	98	75.497	Amphilophus_citrinellus
ENSFHEG00000019848	prdm1b	96	75.085	ENSAOCG00000002230	prdm1b	99	75.254	Amphiprion_ocellaris
ENSFHEG00000019848	prdm1b	100	75.000	ENSAPEG00000019826	prdm1b	100	75.162	Amphiprion_percula
ENSFHEG00000019848	prdm1b	100	76.752	ENSATEG00000006924	prdm1b	100	77.866	Anabas_testudineus
ENSFHEG00000019848	prdm1b	93	79.094	ENSACLG00000005487	prdm1b	90	79.094	Astatotilapia_calliptera
ENSFHEG00000019848	prdm1b	72	56.338	ENSCSEG00000009707	prdm1a	65	56.338	Cynoglossus_semilaevis
ENSFHEG00000019848	prdm1b	62	59.155	ENSCVAG00000019081	prdm1a	64	59.155	Cyprinodon_variegatus
ENSFHEG00000019848	prdm1b	99	82.899	ENSCVAG00000016746	prdm1b	99	83.170	Cyprinodon_variegatus
ENSFHEG00000019848	prdm1b	95	85.880	ENSGAFG00000016191	prdm1b	96	85.880	Gambusia_affinis
ENSFHEG00000019848	prdm1b	91	68.412	ENSGACG00000002716	prdm1b	86	68.576	Gasterosteus_aculeatus
ENSFHEG00000019848	prdm1b	93	79.720	ENSHBUG00000001475	prdm1b	95	79.720	Haplochromis_burtoni
ENSFHEG00000019848	prdm1b	100	71.890	ENSHCOG00000003617	prdm1b	100	71.890	Hippocampus_comes
ENSFHEG00000019848	prdm1b	86	77.922	ENSIPUG00000013740	prdm1b	92	54.701	Ictalurus_punctatus
ENSFHEG00000019848	prdm1b	92	73.369	ENSKMAG00000011218	prdm1b	91	73.369	Kryptolebias_marmoratus
ENSFHEG00000019848	prdm1b	60	60.563	ENSKMAG00000017597	prdm1a	81	39.422	Kryptolebias_marmoratus
ENSFHEG00000019848	prdm1b	89	38.537	ENSKMAG00000016247	-	76	38.537	Kryptolebias_marmoratus
ENSFHEG00000019848	prdm1b	100	78.662	ENSLBEG00000020955	prdm1b	100	78.662	Labrus_bergylta
ENSFHEG00000019848	prdm1b	80	76.056	ENSLOCG00000004978	prdm1b	66	76.056	Lepisosteus_oculatus
ENSFHEG00000019848	prdm1b	100	76.623	ENSMZEG00005026361	prdm1b	95	76.623	Maylandia_zebra
ENSFHEG00000019848	prdm1b	95	77.342	ENSMMOG00000013458	prdm1b	97	77.342	Mola_mola
ENSFHEG00000019848	prdm1b	97	74.086	ENSMALG00000011410	prdm1b	99	74.419	Monopterus_albus
ENSFHEG00000019848	prdm1b	90	80.682	ENSONIG00000013583	prdm1b	79	80.682	Oreochromis_niloticus
ENSFHEG00000019848	prdm1b	99	68.504	ENSORLG00000010025	prdm1b	99	68.521	Oryzias_latipes
ENSFHEG00000019848	prdm1b	91	70.396	ENSORLG00015009022	prdm1b	92	70.052	Oryzias_latipes_hsok
ENSFHEG00000019848	prdm1b	99	50.247	ENSPKIG00000022335	prdm1b	82	50.734	Paramormyrops_kingsleyae
ENSFHEG00000019848	prdm1b	86	75.228	ENSPFOG00000003103	prdm1b	85	75.228	Poecilia_formosa
ENSFHEG00000019848	prdm1b	99	86.058	ENSPLAG00000018491	prdm1b	99	86.058	Poecilia_latipinna
ENSFHEG00000019848	prdm1b	100	88.207	ENSPMEG00000007869	prdm1b	100	88.207	Poecilia_mexicana
ENSFHEG00000019848	prdm1b	99	85.783	ENSPREG00000011327	prdm1b	99	85.783	Poecilia_reticulata
ENSFHEG00000019848	prdm1b	90	39.816	ENSPVAG00000011732	PRDM1	80	39.816	Pteropus_vampyrus
ENSFHEG00000019848	prdm1b	86	41.753	ENSPNAG00000028442	prdm1a	73	41.753	Pygocentrus_nattereri
ENSFHEG00000019848	prdm1b	90	60.364	ENSSFOG00015021896	prdm1b	77	60.364	Scleropages_formosus
ENSFHEG00000019848	prdm1b	100	77.352	ENSSMAG00000020467	prdm1b	100	77.512	Scophthalmus_maximus
ENSFHEG00000019848	prdm1b	100	79.266	ENSSDUG00000020610	prdm1b	100	79.266	Seriola_dumerili
ENSFHEG00000019848	prdm1b	96	37.931	ENSSDUG00000000524	-	80	37.931	Seriola_dumerili
ENSFHEG00000019848	prdm1b	99	79.006	ENSSLDG00000021973	prdm1b	99	78.748	Seriola_lalandi_dorsalis
ENSFHEG00000019848	prdm1b	87	49.686	ENSSLDG00000001957	-	66	49.686	Seriola_lalandi_dorsalis
ENSFHEG00000019848	prdm1b	100	78.734	ENSSPAG00000000803	prdm1b	100	79.221	Stegastes_partitus
ENSFHEG00000019848	prdm1b	96	37.594	ENSSPAG00000009830	-	80	37.594	Stegastes_partitus
ENSFHEG00000019848	prdm1b	95	86.059	ENSXCOG00000018920	prdm1b	84	86.059	Xiphophorus_couchianus
ENSFHEG00000019848	prdm1b	94	83.305	ENSXMAG00000016765	prdm1b	96	83.305	Xiphophorus_maculatus