EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSFHEG00000020150 (Gene tree)
Gene ID: 105927334
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Plus strand
Length: 5487 bases
Position: chrKN811307.1:2691880-2697366
Accession: 105927334
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000033199	TUDOR	PF00567.24	8.7e-05	1	1
ENSFHEP00000033199	SMN	PF06003.12	5e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000034327	-	1482	XM_012864036	ENSFHEP00000033199	238 (aa)	XP_012719490	UPI0006449101

Gene Model

Click here to download ENSFHEG00000020150's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000020150's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000020150	smndc1	100	76.471	ENSG00000119953	SMNDC1	100	76.471	Homo_sapiens
ENSFHEG00000020150	smndc1	100	92.017	ENSAPOG00000021772	smndc1	100	92.017	Acanthochromis_polyacanthus
ENSFHEG00000020150	smndc1	100	76.050	ENSAMEG00000005251	SMNDC1	100	76.050	Ailuropoda_melanoleuca
ENSFHEG00000020150	smndc1	100	89.916	ENSACIG00000004819	smndc1	100	89.916	Amphilophus_citrinellus
ENSFHEG00000020150	smndc1	100	91.176	ENSAOCG00000017869	smndc1	100	91.176	Amphiprion_ocellaris
ENSFHEG00000020150	smndc1	100	91.176	ENSAPEG00000007752	smndc1	100	91.176	Amphiprion_percula
ENSFHEG00000020150	smndc1	100	92.017	ENSATEG00000006830	smndc1	100	92.017	Anabas_testudineus
ENSFHEG00000020150	smndc1	83	75.758	ENSAPLG00000004322	SMNDC1	100	75.758	Anas_platyrhynchos
ENSFHEG00000020150	smndc1	100	77.311	ENSACAG00000005983	SMNDC1	100	77.311	Anolis_carolinensis
ENSFHEG00000020150	smndc1	100	76.050	ENSANAG00000032875	SMNDC1	100	76.050	Aotus_nancymaae
ENSFHEG00000020150	smndc1	100	87.815	ENSACLG00000016360	smndc1	100	87.815	Astatotilapia_calliptera
ENSFHEG00000020150	smndc1	100	80.672	ENSAMXG00000020310	smndc1	100	80.672	Astyanax_mexicanus
ENSFHEG00000020150	smndc1	100	76.050	ENSBTAG00000000551	SMNDC1	100	76.050	Bos_taurus
ENSFHEG00000020150	smndc1	100	76.050	ENSCJAG00000018624	SMNDC1	100	76.050	Callithrix_jacchus
ENSFHEG00000020150	smndc1	100	76.050	ENSCAFG00000010720	SMNDC1	100	76.050	Canis_familiaris
ENSFHEG00000020150	smndc1	100	76.050	ENSCAFG00020011913	SMNDC1	100	76.050	Canis_lupus_dingo
ENSFHEG00000020150	smndc1	100	76.050	ENSCHIG00000010604	SMNDC1	100	76.050	Capra_hircus
ENSFHEG00000020150	smndc1	100	76.050	ENSTSYG00000026454	SMNDC1	100	76.050	Carlito_syrichta
ENSFHEG00000020150	smndc1	100	62.500	ENSCAPG00000009132	SMNDC1	100	72.637	Cavia_aperea
ENSFHEG00000020150	smndc1	100	76.050	ENSCPOG00000031666	SMNDC1	100	76.050	Cavia_porcellus
ENSFHEG00000020150	smndc1	100	76.050	ENSCCAG00000021793	SMNDC1	100	76.050	Cebus_capucinus
ENSFHEG00000020150	smndc1	100	75.630	ENSCATG00000035910	SMNDC1	100	75.630	Cercocebus_atys
ENSFHEG00000020150	smndc1	100	76.050	ENSCLAG00000002838	SMNDC1	100	76.050	Chinchilla_lanigera
ENSFHEG00000020150	smndc1	100	76.050	ENSCSAG00000005169	SMNDC1	100	76.050	Chlorocebus_sabaeus
ENSFHEG00000020150	smndc1	81	71.503	ENSCHOG00000002936	SMNDC1	100	71.503	Choloepus_hoffmanni
ENSFHEG00000020150	smndc1	100	76.471	ENSCPBG00000012837	SMNDC1	100	76.471	Chrysemys_picta_bellii
ENSFHEG00000020150	smndc1	100	70.168	ENSCANG00000034620	-	100	70.168	Colobus_angolensis_palliatus
ENSFHEG00000020150	smndc1	100	59.664	ENSCANG00000036994	-	100	59.664	Colobus_angolensis_palliatus
ENSFHEG00000020150	smndc1	100	76.050	ENSCANG00000031720	-	100	76.050	Colobus_angolensis_palliatus
ENSFHEG00000020150	smndc1	100	75.630	ENSCGRG00001012973	Smndc1	100	75.630	Cricetulus_griseus_chok1gshd
ENSFHEG00000020150	smndc1	100	75.630	ENSCGRG00000012396	Smndc1	100	75.630	Cricetulus_griseus_crigri
ENSFHEG00000020150	smndc1	100	86.975	ENSCSEG00000015621	smndc1	100	86.975	Cynoglossus_semilaevis
ENSFHEG00000020150	smndc1	100	93.277	ENSCVAG00000020432	smndc1	100	93.277	Cyprinodon_variegatus
ENSFHEG00000020150	smndc1	100	82.427	ENSDARG00000056235	smndc1	100	82.427	Danio_rerio
ENSFHEG00000020150	smndc1	100	76.050	ENSDNOG00000016387	SMNDC1	83	76.050	Dasypus_novemcinctus
ENSFHEG00000020150	smndc1	100	76.050	ENSDORG00000023715	Smndc1	100	76.050	Dipodomys_ordii
ENSFHEG00000020150	smndc1	95	41.767	FBgn0039977	CG17454	98	43.373	Drosophila_melanogaster
ENSFHEG00000020150	smndc1	100	66.390	ENSEBUG00000010929	smndc1	100	68.050	Eptatretus_burgeri
ENSFHEG00000020150	smndc1	100	76.050	ENSEASG00005014930	SMNDC1	100	76.050	Equus_asinus_asinus
ENSFHEG00000020150	smndc1	100	76.050	ENSECAG00000029973	SMNDC1	100	76.050	Equus_caballus
ENSFHEG00000020150	smndc1	83	54.545	ENSEEUG00000013407	-	100	54.545	Erinaceus_europaeus
ENSFHEG00000020150	smndc1	100	84.454	ENSELUG00000000227	smndc1	100	84.454	Esox_lucius
ENSFHEG00000020150	smndc1	100	76.050	ENSFCAG00000027353	SMNDC1	100	76.050	Felis_catus
ENSFHEG00000020150	smndc1	100	76.891	ENSFALG00000002306	SMNDC1	100	76.891	Ficedula_albicollis
ENSFHEG00000020150	smndc1	100	76.471	ENSFDAG00000006468	SMNDC1	100	76.471	Fukomys_damarensis
ENSFHEG00000020150	smndc1	100	84.454	ENSGMOG00000016585	smndc1	100	84.454	Gadus_morhua
ENSFHEG00000020150	smndc1	100	76.891	ENSGALG00000008561	SMNDC1	100	76.891	Gallus_gallus
ENSFHEG00000020150	smndc1	100	93.697	ENSGAFG00000011582	smndc1	100	93.697	Gambusia_affinis
ENSFHEG00000020150	smndc1	100	87.395	ENSGACG00000009468	smndc1	100	87.395	Gasterosteus_aculeatus
ENSFHEG00000020150	smndc1	100	76.471	ENSGAGG00000024547	SMNDC1	100	76.471	Gopherus_agassizii
ENSFHEG00000020150	smndc1	100	76.050	ENSGGOG00000010071	SMNDC1	100	76.050	Gorilla_gorilla
ENSFHEG00000020150	smndc1	100	87.815	ENSHBUG00000017596	smndc1	100	87.815	Haplochromis_burtoni
ENSFHEG00000020150	smndc1	100	76.471	ENSHGLG00000013390	-	100	76.471	Heterocephalus_glaber_female
ENSFHEG00000020150	smndc1	100	55.102	ENSHGLG00000001157	-	100	55.102	Heterocephalus_glaber_female
ENSFHEG00000020150	smndc1	100	76.471	ENSHGLG00100004814	-	100	76.471	Heterocephalus_glaber_male
ENSFHEG00000020150	smndc1	100	61.224	ENSHGLG00100004278	-	100	60.241	Heterocephalus_glaber_male
ENSFHEG00000020150	smndc1	100	83.264	ENSHCOG00000000783	smndc1	100	83.264	Hippocampus_comes
ENSFHEG00000020150	smndc1	100	83.193	ENSIPUG00000004217	smndc1	100	83.193	Ictalurus_punctatus
ENSFHEG00000020150	smndc1	100	76.050	ENSSTOG00000006088	SMNDC1	100	76.050	Ictidomys_tridecemlineatus
ENSFHEG00000020150	smndc1	100	76.050	ENSJJAG00000019974	Smndc1	100	76.050	Jaculus_jaculus
ENSFHEG00000020150	smndc1	100	89.916	ENSKMAG00000020134	smndc1	100	89.916	Kryptolebias_marmoratus
ENSFHEG00000020150	smndc1	100	87.815	ENSLBEG00000004598	smndc1	100	87.815	Labrus_bergylta
ENSFHEG00000020150	smndc1	100	75.630	ENSLACG00000007784	SMNDC1	100	75.630	Latimeria_chalumnae
ENSFHEG00000020150	smndc1	100	84.034	ENSLOCG00000012355	smndc1	100	84.034	Lepisosteus_oculatus
ENSFHEG00000020150	smndc1	100	75.630	ENSLAFG00000014353	SMNDC1	100	75.630	Loxodonta_africana
ENSFHEG00000020150	smndc1	100	63.866	ENSMFAG00000038381	-	100	63.866	Macaca_fascicularis
ENSFHEG00000020150	smndc1	100	76.050	ENSMFAG00000002433	-	100	76.050	Macaca_fascicularis
ENSFHEG00000020150	smndc1	100	63.866	ENSMMUG00000045875	-	100	63.866	Macaca_mulatta
ENSFHEG00000020150	smndc1	100	76.050	ENSMMUG00000007775	SMNDC1	100	76.050	Macaca_mulatta
ENSFHEG00000020150	smndc1	100	76.050	ENSMNEG00000042963	-	100	76.050	Macaca_nemestrina
ENSFHEG00000020150	smndc1	100	66.807	ENSMNEG00000033853	-	100	66.807	Macaca_nemestrina
ENSFHEG00000020150	smndc1	100	71.548	ENSMLEG00000040236	SMNDC1	100	71.130	Mandrillus_leucophaeus
ENSFHEG00000020150	smndc1	89	87.793	ENSMAMG00000018233	smndc1	87	87.793	Mastacembelus_armatus
ENSFHEG00000020150	smndc1	100	87.815	ENSMZEG00005027510	smndc1	100	87.815	Maylandia_zebra
ENSFHEG00000020150	smndc1	99	67.932	ENSMGAG00000010777	SMNDC1	99	67.932	Meleagris_gallopavo
ENSFHEG00000020150	smndc1	100	76.050	ENSMAUG00000012243	-	100	76.050	Mesocricetus_auratus
ENSFHEG00000020150	smndc1	99	62.869	ENSMAUG00000005459	-	93	62.869	Mesocricetus_auratus
ENSFHEG00000020150	smndc1	100	65.126	ENSMICG00000031640	-	100	65.126	Microcebus_murinus
ENSFHEG00000020150	smndc1	100	75.630	ENSMICG00000027336	-	100	75.630	Microcebus_murinus
ENSFHEG00000020150	smndc1	100	75.630	ENSMOCG00000002458	Smndc1	100	75.630	Microtus_ochrogaster
ENSFHEG00000020150	smndc1	100	89.496	ENSMMOG00000008856	smndc1	100	89.496	Mola_mola
ENSFHEG00000020150	smndc1	100	76.471	ENSMODG00000010542	SMNDC1	100	76.471	Monodelphis_domestica
ENSFHEG00000020150	smndc1	100	88.235	ENSMALG00000017598	smndc1	100	88.235	Monopterus_albus
ENSFHEG00000020150	smndc1	100	76.471	MGP_CAROLIEiJ_G0023072	Smndc1	100	76.471	Mus_caroli
ENSFHEG00000020150	smndc1	100	76.471	ENSMUSG00000025024	Smndc1	100	76.471	Mus_musculus
ENSFHEG00000020150	smndc1	100	76.471	MGP_PahariEiJ_G0014560	Smndc1	100	76.471	Mus_pahari
ENSFHEG00000020150	smndc1	100	76.471	MGP_SPRETEiJ_G0023993	Smndc1	100	76.471	Mus_spretus
ENSFHEG00000020150	smndc1	100	76.050	ENSMPUG00000002089	SMNDC1	100	76.050	Mustela_putorius_furo
ENSFHEG00000020150	smndc1	100	76.050	ENSMLUG00000016007	SMNDC1	100	76.050	Myotis_lucifugus
ENSFHEG00000020150	smndc1	100	76.471	ENSNGAG00000006833	Smndc1	100	76.471	Nannospalax_galili
ENSFHEG00000020150	smndc1	100	88.235	ENSNBRG00000017089	smndc1	100	88.235	Neolamprologus_brichardi
ENSFHEG00000020150	smndc1	100	76.050	ENSNLEG00000015471	SMNDC1	100	76.050	Nomascus_leucogenys
ENSFHEG00000020150	smndc1	70	58.084	ENSMEUG00000010120	-	98	54.545	Notamacropus_eugenii
ENSFHEG00000020150	smndc1	100	76.050	ENSOPRG00000015348	SMNDC1	100	76.050	Ochotona_princeps
ENSFHEG00000020150	smndc1	100	56.485	ENSODEG00000007594	-	100	54.393	Octodon_degus
ENSFHEG00000020150	smndc1	100	88.235	ENSONIG00000000434	smndc1	100	88.235	Oreochromis_niloticus
ENSFHEG00000020150	smndc1	100	76.891	ENSOANG00000001598	SMNDC1	100	76.891	Ornithorhynchus_anatinus
ENSFHEG00000020150	smndc1	100	76.050	ENSOCUG00000008145	-	100	76.050	Oryctolagus_cuniculus
ENSFHEG00000020150	smndc1	100	55.882	ENSOCUG00000012274	-	100	58.403	Oryctolagus_cuniculus
ENSFHEG00000020150	smndc1	100	85.714	ENSORLG00000005934	smndc1	95	85.714	Oryzias_latipes
ENSFHEG00000020150	smndc1	100	85.714	ENSORLG00020008796	smndc1	95	85.714	Oryzias_latipes_hni
ENSFHEG00000020150	smndc1	100	85.294	ENSORLG00015013666	smndc1	100	85.294	Oryzias_latipes_hsok
ENSFHEG00000020150	smndc1	100	83.193	ENSOMEG00000007590	smndc1	100	83.193	Oryzias_melastigma
ENSFHEG00000020150	smndc1	100	76.050	ENSOGAG00000000571	SMNDC1	100	76.050	Otolemur_garnettii
ENSFHEG00000020150	smndc1	100	76.050	ENSOARG00000009500	SMNDC1	100	76.050	Ovis_aries
ENSFHEG00000020150	smndc1	100	76.050	ENSPPAG00000027815	SMNDC1	100	76.050	Pan_paniscus
ENSFHEG00000020150	smndc1	100	76.050	ENSPPRG00000013749	SMNDC1	100	76.050	Panthera_pardus
ENSFHEG00000020150	smndc1	100	76.050	ENSPTIG00000011451	SMNDC1	100	76.050	Panthera_tigris_altaica
ENSFHEG00000020150	smndc1	100	76.050	ENSPTRG00000002937	SMNDC1	100	76.050	Pan_troglodytes
ENSFHEG00000020150	smndc1	100	72.269	ENSPANG00000031346	-	100	72.269	Papio_anubis
ENSFHEG00000020150	smndc1	100	76.050	ENSPANG00000020805	-	100	76.050	Papio_anubis
ENSFHEG00000020150	smndc1	100	81.933	ENSPKIG00000017164	smndc1	100	81.933	Paramormyrops_kingsleyae
ENSFHEG00000020150	smndc1	100	76.891	ENSPSIG00000012257	SMNDC1	100	76.891	Pelodiscus_sinensis
ENSFHEG00000020150	smndc1	100	82.773	ENSPMGG00000015651	smndc1	100	82.773	Periophthalmus_magnuspinnatus
ENSFHEG00000020150	smndc1	100	76.050	ENSPEMG00000022058	Smndc1	100	76.050	Peromyscus_maniculatus_bairdii
ENSFHEG00000020150	smndc1	100	65.021	ENSPMAG00000007705	smndc1	100	65.021	Petromyzon_marinus
ENSFHEG00000020150	smndc1	95	57.965	ENSPCIG00000009693	-	98	57.965	Phascolarctos_cinereus
ENSFHEG00000020150	smndc1	100	76.471	ENSPCIG00000018419	SMNDC1	100	76.471	Phascolarctos_cinereus
ENSFHEG00000020150	smndc1	100	94.118	ENSPFOG00000017113	smndc1	100	94.118	Poecilia_formosa
ENSFHEG00000020150	smndc1	100	93.277	ENSPLAG00000010372	smndc1	100	93.277	Poecilia_latipinna
ENSFHEG00000020150	smndc1	100	93.697	ENSPMEG00000012288	smndc1	100	93.697	Poecilia_mexicana
ENSFHEG00000020150	smndc1	100	92.437	ENSPREG00000012279	smndc1	100	92.437	Poecilia_reticulata
ENSFHEG00000020150	smndc1	100	76.050	ENSPPYG00000002643	SMNDC1	100	76.050	Pongo_abelii
ENSFHEG00000020150	smndc1	81	72.021	ENSPCAG00000016183	SMNDC1	100	72.021	Procavia_capensis
ENSFHEG00000020150	smndc1	100	75.630	ENSPCOG00000024343	SMNDC1	100	75.630	Propithecus_coquereli
ENSFHEG00000020150	smndc1	100	60.504	ENSPVAG00000004368	SMNDC1	100	60.504	Pteropus_vampyrus
ENSFHEG00000020150	smndc1	83	85.859	ENSPNYG00000024093	smndc1	86	85.859	Pundamilia_nyererei
ENSFHEG00000020150	smndc1	100	79.832	ENSPNAG00000025285	smndc1	100	79.832	Pygocentrus_nattereri
ENSFHEG00000020150	smndc1	100	76.471	ENSRNOG00000014833	Smndc1	100	76.471	Rattus_norvegicus
ENSFHEG00000020150	smndc1	100	62.605	ENSRBIG00000032452	-	100	62.605	Rhinopithecus_bieti
ENSFHEG00000020150	smndc1	100	75.630	ENSRBIG00000000224	-	100	75.630	Rhinopithecus_bieti
ENSFHEG00000020150	smndc1	100	76.050	ENSRROG00000044992	-	100	76.050	Rhinopithecus_roxellana
ENSFHEG00000020150	smndc1	100	63.025	ENSRROG00000039125	-	100	63.025	Rhinopithecus_roxellana
ENSFHEG00000020150	smndc1	100	76.050	ENSSBOG00000026789	SMNDC1	100	76.050	Saimiri_boliviensis_boliviensis
ENSFHEG00000020150	smndc1	100	76.471	ENSSHAG00000015189	SMNDC1	100	76.471	Sarcophilus_harrisii
ENSFHEG00000020150	smndc1	100	81.513	ENSSFOG00015008311	smndc1	100	81.513	Scleropages_formosus
ENSFHEG00000020150	smndc1	100	89.496	ENSSMAG00000020118	smndc1	100	89.496	Scophthalmus_maximus
ENSFHEG00000020150	smndc1	100	91.176	ENSSDUG00000015330	smndc1	100	91.176	Seriola_dumerili
ENSFHEG00000020150	smndc1	100	91.176	ENSSLDG00000017325	smndc1	100	91.176	Seriola_lalandi_dorsalis
ENSFHEG00000020150	smndc1	100	76.050	ENSSARG00000006063	SMNDC1	100	76.050	Sorex_araneus
ENSFHEG00000020150	smndc1	100	77.311	ENSSPUG00000004574	SMNDC1	100	77.311	Sphenodon_punctatus
ENSFHEG00000020150	smndc1	100	89.496	ENSSPAG00000000338	smndc1	100	89.496	Stegastes_partitus
ENSFHEG00000020150	smndc1	100	76.050	ENSSSCG00000030507	SMNDC1	100	76.050	Sus_scrofa
ENSFHEG00000020150	smndc1	100	76.891	ENSTGUG00000010599	SMNDC1	100	76.891	Taeniopygia_guttata
ENSFHEG00000020150	smndc1	100	82.773	ENSTRUG00000023281	smndc1	100	82.773	Takifugu_rubripes
ENSFHEG00000020150	smndc1	100	82.773	ENSTNIG00000013331	smndc1	100	82.773	Tetraodon_nigroviridis
ENSFHEG00000020150	smndc1	100	76.050	ENSTBEG00000014337	SMNDC1	100	76.050	Tupaia_belangeri
ENSFHEG00000020150	smndc1	100	76.050	ENSUAMG00000008142	SMNDC1	100	76.050	Ursus_americanus
ENSFHEG00000020150	smndc1	100	76.050	ENSUMAG00000023722	SMNDC1	100	76.050	Ursus_maritimus
ENSFHEG00000020150	smndc1	83	75.253	ENSVPAG00000003402	SMNDC1	100	75.253	Vicugna_pacos
ENSFHEG00000020150	smndc1	100	76.050	ENSVVUG00000007820	SMNDC1	100	76.050	Vulpes_vulpes
ENSFHEG00000020150	smndc1	57	65.441	ENSXETG00000015415	SMNDC1	96	65.441	Xenopus_tropicalis
ENSFHEG00000020150	smndc1	100	92.857	ENSXCOG00000009159	smndc1	100	92.857	Xiphophorus_couchianus
ENSFHEG00000020150	smndc1	100	93.697	ENSXMAG00000012755	smndc1	100	93.697	Xiphophorus_maculatus