EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSFHEG00000021164 (Gene tree)
Gene ID: 105918526
Gene Symbol: chd1
Alias: fc26h11|fk85d05|si:dkey-106m21.4|wu:fc26h11|wu:fk85d05|zgc:173506
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Fundulus_heteroclitus
Status: putative
Strand: Plus strand
Length: 78709 bases
Position: chrKN805849.1:43286-121994
Accession: 105918526
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSFHEP00000019233	ResIII	PF04851.15	7.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSFHET00000034693	-	4098	-	ENSFHEP00000019233	1365 (aa)	-	-
ENSFHET00000028464	-	6523	-	ENSFHEP00000019267	1681 (aa)	-	-
ENSFHET00000028436	-	6563	XM_012853630	ENSFHEP00000019254	1681 (aa)	XP_012709084	-

Gene Model

Click here to download ENSFHEG00000021164's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSFHEG00000021164's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSFHEG00000021164	chd1	84	62.797	ENSFHEG00000002119	chd2	71	61.259

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSFHEG00000021164	chd1	87	82.759	ENSG00000153922	CHD1	71	81.255	Homo_sapiens
ENSFHEG00000021164	chd1	83	92.335	ENSAPOG00000005764	chd1	96	92.335	Acanthochromis_polyacanthus
ENSFHEG00000021164	chd1	89	89.788	ENSAOCG00000023105	chd1	77	90.033	Amphiprion_ocellaris
ENSFHEG00000021164	chd1	89	91.184	ENSAPEG00000013544	chd1	77	91.429	Amphiprion_percula
ENSFHEG00000021164	chd1	89	90.367	ENSATEG00000010676	chd1	75	90.546	Anabas_testudineus
ENSFHEG00000021164	chd1	88	86.198	ENSAMXG00000010843	chd1	93	86.198	Astyanax_mexicanus
ENSFHEG00000021164	chd1	87	82.759	ENSCATG00000032035	CHD1	72	81.255	Cercocebus_atys
ENSFHEG00000021164	chd1	87	82.759	ENSCSAG00000015339	CHD1	71	81.255	Chlorocebus_sabaeus
ENSFHEG00000021164	chd1	64	78.271	ENSCPBG00000015831	CHD1	86	78.458	Chrysemys_picta_bellii
ENSFHEG00000021164	chd1	87	80.320	ENSCANG00000036916	CHD1	72	78.321	Colobus_angolensis_palliatus
ENSFHEG00000021164	chd1	89	80.490	ENSCGRG00001023943	Chd1	72	80.490	Cricetulus_griseus_chok1gshd
ENSFHEG00000021164	chd1	89	80.490	ENSCGRG00000008652	Chd1	72	80.490	Cricetulus_griseus_crigri
ENSFHEG00000021164	chd1	90	88.662	ENSCSEG00000009553	chd1	78	88.662	Cynoglossus_semilaevis
ENSFHEG00000021164	chd1	87	83.011	ENSEASG00005016110	CHD1	87	81.352	Equus_asinus_asinus
ENSFHEG00000021164	chd1	89	85.423	ENSELUG00000017677	chd1	75	85.423	Esox_lucius
ENSFHEG00000021164	chd1	89	87.020	ENSGMOG00000001537	chd1	70	82.880	Gadus_morhua
ENSFHEG00000021164	chd1	87	81.528	ENSGALG00000031327	-	75	80.000	Gallus_gallus
ENSFHEG00000021164	chd1	89	87.927	ENSGAFG00000019880	chd1	79	88.006	Gambusia_affinis
ENSFHEG00000021164	chd1	87	78.505	ENSGGOG00000011463	CHD1	72	77.055	Gorilla_gorilla
ENSFHEG00000021164	chd1	89	88.807	ENSHCOG00000014222	chd1	76	88.780	Hippocampus_comes
ENSFHEG00000021164	chd1	89	87.234	ENSIPUG00000001369	chd1	77	87.234	Ictalurus_punctatus
ENSFHEG00000021164	chd1	65	82.167	ENSLAFG00000023183	CHD1	82	82.167	Loxodonta_africana
ENSFHEG00000021164	chd1	87	82.759	ENSMFAG00000031226	CHD1	72	81.255	Macaca_fascicularis
ENSFHEG00000021164	chd1	87	82.843	ENSMMUG00000014090	CHD1	86	81.337	Macaca_mulatta
ENSFHEG00000021164	chd1	87	82.759	ENSMNEG00000045073	CHD1	72	81.255	Macaca_nemestrina
ENSFHEG00000021164	chd1	87	77.124	ENSMLEG00000041096	CHD1	71	76.610	Mandrillus_leucophaeus
ENSFHEG00000021164	chd1	91	88.496	ENSMZEG00005010957	chd1	97	84.992	Maylandia_zebra
ENSFHEG00000021164	chd1	86	81.733	ENSMOCG00000019121	Chd1	70	81.942	Microtus_ochrogaster
ENSFHEG00000021164	chd1	52	83.708	ENSMODG00000019266	-	98	79.947	Monodelphis_domestica
ENSFHEG00000021164	chd1	90	90.325	ENSMALG00000013317	chd1	92	85.562	Monopterus_albus
ENSFHEG00000021164	chd1	89	80.490	MGP_CAROLIEiJ_G0021099	Chd1	82	83.597	Mus_caroli
ENSFHEG00000021164	chd1	89	80.571	ENSMUSG00000023852	Chd1	82	83.597	Mus_musculus
ENSFHEG00000021164	chd1	89	80.082	MGP_PahariEiJ_G0023414	Chd1	82	83.503	Mus_pahari
ENSFHEG00000021164	chd1	86	91.032	ENSNBRG00000006860	chd1	75	91.032	Neolamprologus_brichardi
ENSFHEG00000021164	chd1	87	82.759	ENSNLEG00000014493	CHD1	72	81.255	Nomascus_leucogenys
ENSFHEG00000021164	chd1	89	80.766	ENSOANG00000004891	CHD1	75	84.009	Ornithorhynchus_anatinus
ENSFHEG00000021164	chd1	65	88.362	ENSORLG00015016725	chd1	83	88.362	Oryzias_latipes_hsok
ENSFHEG00000021164	chd1	87	81.355	ENSPPAG00000043367	CHD1	72	79.903	Pan_paniscus
ENSFHEG00000021164	chd1	87	82.759	ENSPTRG00000017103	CHD1	72	81.255	Pan_troglodytes
ENSFHEG00000021164	chd1	87	82.759	ENSPANG00000006387	CHD1	72	81.255	Papio_anubis
ENSFHEG00000021164	chd1	85	86.640	ENSPKIG00000024719	chd1	74	86.978	Paramormyrops_kingsleyae
ENSFHEG00000021164	chd1	87	89.465	ENSPMGG00000005785	chd1	91	88.661	Periophthalmus_magnuspinnatus
ENSFHEG00000021164	chd1	89	80.571	ENSPEMG00000015939	Chd1	72	80.571	Peromyscus_maniculatus_bairdii
ENSFHEG00000021164	chd1	52	95.091	ENSPLAG00000006473	-	81	86.301	Poecilia_latipinna
ENSFHEG00000021164	chd1	89	94.531	ENSPREG00000004209	chd1	74	94.531	Poecilia_reticulata
ENSFHEG00000021164	chd1	89	80.571	ENSRNOG00000014434	Chd1	86	80.571	Rattus_norvegicus
ENSFHEG00000021164	chd1	86	82.483	ENSRBIG00000044325	CHD1	70	82.553	Rhinopithecus_bieti
ENSFHEG00000021164	chd1	89	81.306	ENSRROG00000001726	CHD1	72	81.306	Rhinopithecus_roxellana
ENSFHEG00000021164	chd1	91	82.199	ENSSFOG00015007161	chd1	97	79.575	Scleropages_formosus
ENSFHEG00000021164	chd1	89	91.265	ENSSDUG00000018314	chd1	91	86.544	Seriola_dumerili
ENSFHEG00000021164	chd1	64	92.273	ENSSLDG00000017244	chd1	95	85.744	Seriola_lalandi_dorsalis
ENSFHEG00000021164	chd1	90	91.248	ENSSPAG00000007024	chd1	92	86.927	Stegastes_partitus
ENSFHEG00000021164	chd1	87	83.095	ENSSSCG00000014177	CHD1	83	81.500	Sus_scrofa
ENSFHEG00000021164	chd1	89	86.743	ENSTRUG00000010282	chd1	72	86.825	Takifugu_rubripes
ENSFHEG00000021164	chd1	78	89.775	ENSTNIG00000007101	chd1	91	84.206	Tetraodon_nigroviridis
ENSFHEG00000021164	chd1	91	89.919	ENSXCOG00000017184	chd1	75	89.919	Xiphophorus_couchianus
ENSFHEG00000021164	chd1	88	94.649	ENSXMAG00000014538	chd1	87	94.649	Xiphophorus_maculatus