EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

PPI

Gene Ontology

Description

Ensembl ID: ENSG00000031823 (Gene tree)
Gene ID: 8498
Gene Symbol: RANBP3
Alias: N
Full Name: RAN binding protein 3
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 62,171 bases
Position: chr19:5,916,139-5,978,309
Accession: 9850
RBP type: non-canonical RBP
Summary: This gene encodes a protein with a RanBD1 domain that is found in both the nucleus and cytoplasm. This protein plays a role in nuclear export as part of a heteromeric complex. Alternate transcriptional splice variants, encoding different isoforms, have been characterized. [provided by RefSeq, Jul 2008]

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & MCF10A	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000589353	RANBP3-216	490	-	ENSP00000468211	77 (aa)	-	K7ERD4
ENST00000587159	RANBP3-207	554	-	-	- (aa)	-	-
ENST00000592771	RANBP3-229	1937	-	ENSP00000466879	74 (aa)	-	K7ENB9
ENST00000587956	RANBP3-213	512	-	-	- (aa)	-	-
ENST00000590953	RANBP3-219	571	-	-	- (aa)	-	-
ENST00000439268	RANBP3-203	3186	-	ENSP00000404837	562 (aa)	-	Q9H6Z4
ENST00000587463	RANBP3-210	461	-	ENSP00000466970	62 (aa)	-	K7ENJ2
ENST00000587799	RANBP3-212	403	-	-	- (aa)	-	-
ENST00000592266	RANBP3-227	589	-	-	- (aa)	-	-
ENST00000592197	RANBP3-226	530	-	-	- (aa)	-	-
ENST00000591881	RANBP3-224	575	-	-	- (aa)	-	-
ENST00000591092	RANBP3-220	1783	XM_006722929	ENSP00000465085	494 (aa)	XP_006722992	B7Z7F3
ENST00000592133	RANBP3-225	562	-	ENSP00000464986	81 (aa)	-	K7EJ17
ENST00000586117	RANBP3-205	524	-	-	- (aa)	-	-
ENST00000591333	RANBP3-222	557	-	ENSP00000466638	139 (aa)	-	K7EMT3
ENST00000590623	RANBP3-218	786	-	ENSP00000466510	51 (aa)	-	K7EMH9
ENST00000586344	RANBP3-206	2554	-	-	- (aa)	-	-
ENST00000588879	RANBP3-215	535	-	-	- (aa)	-	-
ENST00000593025	RANBP3-230	551	-	-	- (aa)	-	-
ENST00000589886	RANBP3-217	472	-	-	- (aa)	-	-
ENST00000587411	RANBP3-209	2669	-	-	- (aa)	-	-
ENST00000587479	RANBP3-211	547	-	ENSP00000464774	155 (aa)	-	K7EIJ4
ENST00000588010	RANBP3-214	568	-	ENSP00000464705	73 (aa)	-	K7EID7
ENST00000587263	RANBP3-208	579	-	ENSP00000467560	108 (aa)	-	K7EPW1
ENST00000592621	RANBP3-228	818	-	ENSP00000468815	122 (aa)	-	K7ESQ0
ENST00000340578	RANBP3-202	3233	-	ENSP00000341483	567 (aa)	-	Q9H6Z4
ENST00000034275	RANBP3-201	1762	XM_006722928	ENSP00000034275	499 (aa)	XP_006722991	Q9H6Z4
ENST00000591124	RANBP3-221	575	-	-	- (aa)	-	-
ENST00000585339	RANBP3-204	566	-	ENSP00000467760	38 (aa)	-	K7EQB8
ENST00000591736	RANBP3-223	573	-	ENSP00000466761	171 (aa)	-	K7EN31

Gene Model

Click here to download ENSG00000031823's gene model file

Pathways

Pathway ID	Pathway Name	Source
hsa05166	Human T-cell leukemia virus 1 infection	KEGG

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000031823	Autistic Disorder	9.3194000E-007	-
ENSG00000031823	Child Development Disorders, Pervasive	3.5669000E-005	-
ENSG00000031823	Autistic Disorder	1.5968000E-006	-
ENSG00000031823	Child Development Disorders, Pervasive	1.8857000E-005	-

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000031823	rs274794	19	5927085	?	Lung function (FVC)	30595370			EFO_0004312

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000031823's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005096	GTPase activator activity	21873635.	IBA	Function
GO:0005515	protein binding	11932251.21960005.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IDA	Component
GO:0005643	nuclear pore	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	IDA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006611	protein export from nucleus	21873635.	IBA	Process
GO:0008536	Ran GTPase binding	21873635.	IBA	Function
GO:0043547	positive regulation of GTPase activity	-	IEA	Process
GO:0070412	R-SMAD binding	19289081.	IPI	Function