EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000039560 (Gene tree)
Gene ID
26064
Gene Symbol
RAI14
Alias
NORPEG|KIAA1334|RAI13|DKFZp564G013
Full Name
retinoic acid induced 14
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
176,391 bases
Position
chr5:34,656,237-34,832,627
Accession
14873
RBP type
non-canonical RBP
Summary
(Retinoic Acid Induced 14) is a Protein Coding gene.
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000510319RAI14-215557-ENSP0000042450756 (aa)-D6RB25
ENST00000513974RAI14-222548-ENSP00000422112126 (aa)-D6R9G6
ENST00000508315RAI14-212579-ENSP00000426770125 (aa)-D6REL2
ENST00000512305RAI14-218542-ENSP00000422114107 (aa)-D6R9G4
ENST00000509247RAI14-214577--- (aa)--
ENST00000510386RAI14-216423--- (aa)--
ENST00000511652RAI14-217470--- (aa)--
ENST00000502736RAI14-203569--- (aa)--
ENST00000504052RAI14-206630-ENSP00000422515114 (aa)-D6RBY4
ENST00000514527RAI14-224660-ENSP00000424879139 (aa)-D6RF74
ENST00000507502RAI14-210340--- (aa)--
ENST00000506376RAI14-2083091-ENSP00000423854972 (aa)-Q9P0K7
ENST00000515799RAI14-2283486-ENSP00000427123983 (aa)-Q9P0K7
ENST00000507276RAI14-209584--- (aa)--
ENST00000514036RAI14-223575-ENSP00000424502104 (aa)-D6RB27
ENST00000265109RAI14-2015092XM_011514024ENSP00000265109980 (aa)XP_011512326Q9P0K7
ENST00000428746RAI14-2025064XM_006714469ENSP00000388725980 (aa)XP_006714532Q9P0K7
ENST00000503673RAI14-2053339XM_011514018ENSP00000422942980 (aa)XP_011512320Q9P0K7
ENST00000514931RAI14-226550--- (aa)--
ENST00000507883RAI14-211773--- (aa)--
ENST00000514873RAI14-225542-ENSP00000421424126 (aa)-D6R9G6
ENST00000503222RAI14-204562-ENSP0000042592956 (aa)-D6RB25
ENST00000513772RAI14-221557--- (aa)--
ENST00000512629RAI14-2202941XM_011514025ENSP00000422377951 (aa)XP_011512327Q9P0K7
ENST00000512625RAI14-219554-ENSP00000425115150 (aa)-D6RE17
ENST00000505185RAI14-207225--- (aa)--
ENST00000508777RAI14-2131387-ENSP0000042396566 (aa)-D6RBW6
ENST00000515448RAI14-227522-ENSP0000042533720 (aa)-D6RDL2
Gene Model
Click here to download ENSG00000039560's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000039560Platelet Function Tests2.4920800E-005-
ENSG00000039560Rest9E-627126917
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000039560rs115788537534703825ADaytime sleep phenotypes27126917[0.093-0.24] unit increase0.1662EFO_0007828
ENSG00000039560rs1545348534718238TWaist circumference adjusted for BMI (adjusted for smoking behaviour)28443625[0.014-0.034] unit increase0.024EFO_0004318|EFO_0007789
ENSG00000039560rs1545348534718238TWaist circumference adjusted for BMI (joint analysis main effects and smoking interaction)28443625EFO_0004318|EFO_0007789
ENSG00000039560rs154121534669132?Red blood cell count30595370EFO_0004305
ENSG00000039560rs6893700534753017?Hair color30595370EFO_0007822
ENSG00000039560rs365737534663611?Lung function (FEV1/FVC)30595370EFO_0004713
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000039560's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000039560RAI14100100.000ENSMUSG00000022246Rai1410085.031Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001650fibrillar center-IDAComponent
GO:0005634nucleus-IDAComponent
GO:0005829cytosol-IDAComponent
GO:0005856cytoskeleton-IEAComponent
GO:0005938cell cortex-IEAComponent
GO:0007283spermatogenesis-IEAProcess
GO:0030054cell junction-IEAComponent
GO:0030154cell differentiation-IEAProcess

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us