EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000041802 (Gene tree)
Gene ID: 55341
Gene Symbol: LSG1
Alias: FLJ11301
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Minus strand
Length: 31,690 bases
Position: chr3:194,640,788-194,672,477
Accession: 25652
RBP type: canonical RBP
Summary: This gene encodes a protein related to the yeast large subunit GTPase 1. The encoded protein is necessary for cell viability and may localize in the endoplasmic reticulum, nucleus and cytoplasm.[provided by RefSeq, Feb 2009]

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000265245	MMR_HSR1	PF01926.23	1.5e-13	1	1
ENSP00000408264	MMR_HSR1	PF01926.23	5.5e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000461343	LSG1-205	428	-	-	- (aa)	-	-
ENST00000265245	LSG1-201	3572	-	ENSP00000265245	658 (aa)	-	Q9H089
ENST00000460584	LSG1-204	668	-	-	- (aa)	-	-
ENST00000427461	LSG1-202	755	-	ENSP00000400903	178 (aa)	-	F8WFC6
ENST00000466391	LSG1-206	791	-	-	- (aa)	-	-
ENST00000480853	LSG1-208	539	-	-	- (aa)	-	-
ENST00000437613	LSG1-203	854	-	ENSP00000408264	285 (aa)	-	H7C2X7
ENST00000475763	LSG1-207	590	-	-	- (aa)	-	-

Gene Model

Click here to download ENSG00000041802's gene model file

Pathways

Pathway ID	Pathway Name	Source
hsa03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000041802's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000041802	LSG1	98	75.287	ENSAPOG00000009694	lsg1	99	64.502	Acanthochromis_polyacanthus
ENSG00000041802	LSG1	98	87.931	ENSAMEG00000009343	LSG1	99	82.246	Ailuropoda_melanoleuca
ENSG00000041802	LSG1	90	77.640	ENSACIG00000012406	lsg1	99	64.992	Amphilophus_citrinellus
ENSG00000041802	LSG1	98	74.713	ENSAOCG00000016066	lsg1	99	63.788	Amphiprion_ocellaris
ENSG00000041802	LSG1	98	75.287	ENSAPEG00000003252	lsg1	99	64.091	Amphiprion_percula
ENSG00000041802	LSG1	90	77.019	ENSATEG00000011794	lsg1	99	64.992	Anabas_testudineus
ENSG00000041802	LSG1	79	81.560	ENSACAG00000004222	LSG1	99	64.241	Anolis_carolinensis
ENSG00000041802	LSG1	100	94.225	ENSANAG00000021153	LSG1	100	94.225	Aotus_nancymaae
ENSG00000041802	LSG1	98	74.713	ENSACLG00000000520	lsg1	99	65.053	Astatotilapia_calliptera
ENSG00000041802	LSG1	98	73.563	ENSAMXG00000008271	lsg1	99	63.389	Astyanax_mexicanus
ENSG00000041802	LSG1	98	92.529	ENSBTAG00000008461	LSG1	100	84.674	Bos_taurus
ENSG00000041802	LSG1	98	39.011	WBGene00016907	C53H9.2	94	58.871	Caenorhabditis_elegans
ENSG00000041802	LSG1	98	95.977	ENSCJAG00000013962	LSG1	100	93.161	Callithrix_jacchus
ENSG00000041802	LSG1	95	84.160	ENSCAFG00000013445	LSG1	99	84.160	Canis_familiaris
ENSG00000041802	LSG1	98	87.356	ENSCAFG00020002216	LSG1	99	83.788	Canis_lupus_dingo
ENSG00000041802	LSG1	98	92.529	ENSCHIG00000015769	LSG1	99	83.891	Capra_hircus
ENSG00000041802	LSG1	98	93.103	ENSTSYG00000001447	LSG1	100	88.923	Carlito_syrichta
ENSG00000041802	LSG1	95	76.274	ENSCAPG00000009856	LSG1	100	76.480	Cavia_aperea
ENSG00000041802	LSG1	98	96.552	ENSCCAG00000035744	LSG1	100	92.705	Cebus_capucinus
ENSG00000041802	LSG1	98	98.276	ENSCATG00000042060	LSG1	100	93.465	Cercocebus_atys
ENSG00000041802	LSG1	98	98.276	ENSCSAG00000008796	LSG1	92	95.745	Chlorocebus_sabaeus
ENSG00000041802	LSG1	98	78.161	ENSCPBG00000015941	LSG1	83	69.688	Chrysemys_picta_bellii
ENSG00000041802	LSG1	98	51.429	ENSCING00000007079	-	91	62.632	Ciona_intestinalis
ENSG00000041802	LSG1	98	52.000	ENSCSAVG00000002514	-	96	56.379	Ciona_savignyi
ENSG00000041802	LSG1	100	95.593	ENSCANG00000030709	LSG1	100	95.593	Colobus_angolensis_palliatus
ENSG00000041802	LSG1	98	90.805	ENSCGRG00001019846	Lsg1	100	81.818	Cricetulus_griseus_chok1gshd
ENSG00000041802	LSG1	98	90.805	ENSCGRG00000014617	Lsg1	100	81.818	Cricetulus_griseus_crigri
ENSG00000041802	LSG1	90	77.778	ENSCSEG00000008522	lsg1	99	63.213	Cynoglossus_semilaevis
ENSG00000041802	LSG1	89	79.747	ENSCVAG00000002484	lsg1	99	66.210	Cyprinodon_variegatus
ENSG00000041802	LSG1	98	77.714	ENSDARG00000015352	lsg1	99	67.678	Danio_rerio
ENSG00000041802	LSG1	98	91.379	ENSDNOG00000006224	LSG1	100	84.441	Dasypus_novemcinctus
ENSG00000041802	LSG1	98	54.237	FBgn0266284	Ns3	91	55.253	Drosophila_melanogaster
ENSG00000041802	LSG1	88	88.000	ENSETEG00000003888	LSG1	89	88.000	Echinops_telfairi
ENSG00000041802	LSG1	88	57.912	ENSEBUG00000003119	lsg1	85	57.048	Eptatretus_burgeri
ENSG00000041802	LSG1	98	91.379	ENSEASG00005000678	LSG1	100	85.888	Equus_asinus_asinus
ENSG00000041802	LSG1	98	91.379	ENSECAG00000017659	LSG1	100	86.039	Equus_caballus
ENSG00000041802	LSG1	87	84.483	ENSEEUG00000015217	LSG1	87	84.483	Erinaceus_europaeus
ENSG00000041802	LSG1	98	72.414	ENSELUG00000023973	lsg1	99	62.651	Esox_lucius
ENSG00000041802	LSG1	98	89.655	ENSFCAG00000024957	LSG1	99	84.650	Felis_catus
ENSG00000041802	LSG1	92	66.721	ENSFALG00000007210	LSG1	94	66.721	Ficedula_albicollis
ENSG00000041802	LSG1	98	87.356	ENSFDAG00000017373	LSG1	100	78.756	Fukomys_damarensis
ENSG00000041802	LSG1	89	76.730	ENSFHEG00000003680	lsg1	99	64.776	Fundulus_heteroclitus
ENSG00000041802	LSG1	90	75.610	ENSGMOG00000015834	lsg1	87	71.486	Gadus_morhua
ENSG00000041802	LSG1	99	64.750	ENSGALG00000007058	LSG1	87	63.363	Gallus_gallus
ENSG00000041802	LSG1	89	79.747	ENSGAFG00000015831	lsg1	99	65.211	Gambusia_affinis
ENSG00000041802	LSG1	90	73.171	ENSGACG00000009323	lsg1	99	62.651	Gasterosteus_aculeatus
ENSG00000041802	LSG1	100	98.176	ENSGGOG00000000520	LSG1	100	98.176	Gorilla_gorilla
ENSG00000041802	LSG1	98	74.713	ENSHBUG00000005659	lsg1	99	63.731	Haplochromis_burtoni
ENSG00000041802	LSG1	98	88.506	ENSHGLG00000017390	LSG1	100	76.657	Heterocephalus_glaber_female
ENSG00000041802	LSG1	98	88.506	ENSHGLG00100018587	LSG1	100	76.657	Heterocephalus_glaber_male
ENSG00000041802	LSG1	89	77.215	ENSHCOG00000016848	lsg1	99	62.760	Hippocampus_comes
ENSG00000041802	LSG1	98	75.429	ENSIPUG00000008631	lsg1	99	65.350	Ictalurus_punctatus
ENSG00000041802	LSG1	96	78.246	ENSSTOG00000010234	LSG1	100	82.474	Ictidomys_tridecemlineatus
ENSG00000041802	LSG1	98	88.506	ENSJJAG00000015513	Lsg1	100	80.514	Jaculus_jaculus
ENSG00000041802	LSG1	90	75.776	ENSKMAG00000009681	lsg1	99	63.238	Kryptolebias_marmoratus
ENSG00000041802	LSG1	90	77.019	ENSLBEG00000024261	lsg1	99	63.318	Labrus_bergylta
ENSG00000041802	LSG1	98	75.287	ENSLACG00000013399	LSG1	99	65.481	Latimeria_chalumnae
ENSG00000041802	LSG1	90	83.230	ENSLOCG00000004918	lsg1	99	66.364	Lepisosteus_oculatus
ENSG00000041802	LSG1	98	89.080	ENSLAFG00000012919	-	100	83.460	Loxodonta_africana
ENSG00000041802	LSG1	98	98.851	ENSMFAG00000039903	LSG1	100	93.769	Macaca_fascicularis
ENSG00000041802	LSG1	98	98.851	ENSMMUG00000010708	LSG1	100	95.745	Macaca_mulatta
ENSG00000041802	LSG1	98	98.851	ENSMNEG00000031538	LSG1	100	93.769	Macaca_nemestrina
ENSG00000041802	LSG1	98	98.851	ENSMLEG00000041184	LSG1	100	95.745	Mandrillus_leucophaeus
ENSG00000041802	LSG1	98	74.713	ENSMAMG00000000470	lsg1	99	62.576	Mastacembelus_armatus
ENSG00000041802	LSG1	98	74.713	ENSMZEG00005017865	lsg1	99	63.881	Maylandia_zebra
ENSG00000041802	LSG1	89	66.440	ENSMGAG00000007050	LSG1	99	64.833	Meleagris_gallopavo
ENSG00000041802	LSG1	98	91.477	ENSMAUG00000016976	Lsg1	93	80.597	Mesocricetus_auratus
ENSG00000041802	LSG1	100	85.584	ENSMICG00000049087	LSG1	100	85.584	Microcebus_murinus
ENSG00000041802	LSG1	98	91.954	ENSMOCG00000022136	Lsg1	100	79.305	Microtus_ochrogaster
ENSG00000041802	LSG1	90	78.882	ENSMMOG00000008884	lsg1	99	68.788	Mola_mola
ENSG00000041802	LSG1	97	62.209	ENSMODG00000019828	LSG1	99	58.333	Monodelphis_domestica
ENSG00000041802	LSG1	98	91.954	MGP_CAROLIEiJ_G0020648	Lsg1	100	81.611	Mus_caroli
ENSG00000041802	LSG1	98	93.103	ENSMUSG00000022538	Lsg1	100	81.763	Mus_musculus
ENSG00000041802	LSG1	92	92.683	MGP_PahariEiJ_G0016352	Lsg1	100	81.639	Mus_pahari
ENSG00000041802	LSG1	98	93.103	MGP_SPRETEiJ_G0021544	Lsg1	100	81.763	Mus_spretus
ENSG00000041802	LSG1	98	87.931	ENSMPUG00000003734	LSG1	99	83.283	Mustela_putorius_furo
ENSG00000041802	LSG1	98	91.379	ENSMLUG00000012548	LSG1	99	85.432	Myotis_lucifugus
ENSG00000041802	LSG1	98	90.805	ENSNGAG00000021872	Lsg1	100	79.970	Nannospalax_galili
ENSG00000041802	LSG1	100	95.897	ENSNLEG00000008293	LSG1	100	95.897	Nomascus_leucogenys
ENSG00000041802	LSG1	86	69.318	ENSMEUG00000009041	-	82	70.725	Notamacropus_eugenii
ENSG00000041802	LSG1	98	74.713	ENSONIG00000002635	lsg1	99	64.297	Oreochromis_niloticus
ENSG00000041802	LSG1	95	72.568	ENSOANG00000012742	LSG1	99	71.132	Ornithorhynchus_anatinus
ENSG00000041802	LSG1	98	92.529	ENSOCUG00000004817	LSG1	100	85.736	Oryctolagus_cuniculus
ENSG00000041802	LSG1	90	76.398	ENSORLG00000007695	lsg1	99	63.623	Oryzias_latipes
ENSG00000041802	LSG1	90	76.398	ENSORLG00020016286	lsg1	99	63.166	Oryzias_latipes_hni
ENSG00000041802	LSG1	90	76.398	ENSORLG00015012025	lsg1	99	63.623	Oryzias_latipes_hsok
ENSG00000041802	LSG1	90	76.398	ENSOMEG00000022379	lsg1	99	63.374	Oryzias_melastigma
ENSG00000041802	LSG1	98	90.909	ENSOGAG00000003475	LSG1	100	85.498	Otolemur_garnettii
ENSG00000041802	LSG1	98	92.529	ENSOARG00000020403	LSG1	99	83.156	Ovis_aries
ENSG00000041802	LSG1	100	97.872	ENSPPAG00000029271	LSG1	100	97.872	Pan_paniscus
ENSG00000041802	LSG1	98	89.655	ENSPPRG00000010281	LSG1	99	84.211	Panthera_pardus
ENSG00000041802	LSG1	98	89.655	ENSPTIG00000010789	LSG1	99	84.954	Panthera_tigris_altaica
ENSG00000041802	LSG1	100	97.872	ENSPTRG00000015760	LSG1	100	97.872	Pan_troglodytes
ENSG00000041802	LSG1	98	98.276	ENSPANG00000018249	LSG1	100	94.073	Papio_anubis
ENSG00000041802	LSG1	85	80.132	ENSPKIG00000002895	lsg1	100	64.157	Paramormyrops_kingsleyae
ENSG00000041802	LSG1	96	65.474	ENSPSIG00000009821	LSG1	99	64.852	Pelodiscus_sinensis
ENSG00000041802	LSG1	95	65.287	ENSPMGG00000000931	lsg1	99	64.929	Periophthalmus_magnuspinnatus
ENSG00000041802	LSG1	98	90.805	ENSPEMG00000012082	-	100	80.816	Peromyscus_maniculatus_bairdii
ENSG00000041802	LSG1	98	67.816	ENSPMAG00000007451	lsg1	99	59.765	Petromyzon_marinus
ENSG00000041802	LSG1	89	78.667	ENSPCIG00000013890	LSG1	82	67.188	Phascolarctos_cinereus
ENSG00000041802	LSG1	89	79.747	ENSPFOG00000021882	lsg1	99	66.316	Poecilia_formosa
ENSG00000041802	LSG1	89	79.747	ENSPLAG00000019536	lsg1	99	65.564	Poecilia_latipinna
ENSG00000041802	LSG1	88	78.344	ENSPMEG00000017281	lsg1	99	65.517	Poecilia_mexicana
ENSG00000041802	LSG1	89	79.747	ENSPREG00000006048	lsg1	99	55.457	Poecilia_reticulata
ENSG00000041802	LSG1	98	98.276	ENSPPYG00000014425	LSG1	100	94.399	Pongo_abelii
ENSG00000041802	LSG1	90	88.000	ENSPCAG00000005511	LSG1	90	88.000	Procavia_capensis
ENSG00000041802	LSG1	98	89.655	ENSPCOG00000012360	LSG1	100	87.405	Propithecus_coquereli
ENSG00000041802	LSG1	98	74.713	ENSPNYG00000021994	lsg1	99	64.902	Pundamilia_nyererei
ENSG00000041802	LSG1	98	77.011	ENSPNAG00000015533	lsg1	99	65.152	Pygocentrus_nattereri
ENSG00000041802	LSG1	98	93.103	ENSRNOG00000001727	Lsg1	100	82.051	Rattus_norvegicus
ENSG00000041802	LSG1	100	94.833	ENSRBIG00000029053	LSG1	100	94.833	Rhinopithecus_bieti
ENSG00000041802	LSG1	100	94.833	ENSRROG00000037702	LSG1	100	94.833	Rhinopithecus_roxellana
ENSG00000041802	LSG1	92	36.000	YGL099W	LSG1	68	58.084	Saccharomyces_cerevisiae
ENSG00000041802	LSG1	98	95.977	ENSSBOG00000034938	LSG1	100	93.769	Saimiri_boliviensis_boliviensis
ENSG00000041802	LSG1	87	70.000	ENSSHAG00000003487	LSG1	99	66.163	Sarcophilus_harrisii
ENSG00000041802	LSG1	90	73.913	ENSSFOG00015008955	lsg1	99	62.819	Scleropages_formosus
ENSG00000041802	LSG1	90	77.640	ENSSDUG00000004622	lsg1	99	64.487	Seriola_dumerili
ENSG00000041802	LSG1	90	77.640	ENSSLDG00000010869	lsg1	99	64.231	Seriola_lalandi_dorsalis
ENSG00000041802	LSG1	81	83.529	ENSSARG00000012981	LSG1	81	83.529	Sorex_araneus
ENSG00000041802	LSG1	98	75.568	ENSSPUG00000016347	LSG1	99	73.770	Sphenodon_punctatus
ENSG00000041802	LSG1	98	74.713	ENSSPAG00000005508	lsg1	99	63.485	Stegastes_partitus
ENSG00000041802	LSG1	98	92.529	ENSSSCG00000011827	LSG1	99	82.979	Sus_scrofa
ENSG00000041802	LSG1	89	63.953	ENSTGUG00000009068	LSG1	99	63.953	Taeniopygia_guttata
ENSG00000041802	LSG1	89	75.316	ENSTRUG00000017380	lsg1	99	60.817	Takifugu_rubripes
ENSG00000041802	LSG1	89	75.625	ENSTNIG00000015570	lsg1	99	64.350	Tetraodon_nigroviridis
ENSG00000041802	LSG1	98	92.529	ENSTTRG00000000559	LSG1	99	76.480	Tursiops_truncatus
ENSG00000041802	LSG1	98	88.506	ENSUAMG00000012454	LSG1	99	83.587	Ursus_americanus
ENSG00000041802	LSG1	98	88.506	ENSUMAG00000000855	LSG1	99	83.587	Ursus_maritimus
ENSG00000041802	LSG1	99	81.000	ENSVPAG00000012400	LSG1	99	80.320	Vicugna_pacos
ENSG00000041802	LSG1	95	83.360	ENSVVUG00000008956	LSG1	97	83.360	Vulpes_vulpes
ENSG00000041802	LSG1	98	74.713	ENSXETG00000003451	lsg1	99	66.206	Xenopus_tropicalis
ENSG00000041802	LSG1	89	79.114	ENSXCOG00000003239	lsg1	99	65.315	Xiphophorus_couchianus
ENSG00000041802	LSG1	89	79.747	ENSXMAG00000005536	lsg1	99	65.361	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003924	GTPase activity	16209721.	IDA	Function
GO:0005525	GTP binding	16209721.	IDA	Function
GO:0005634	nucleus	-	IDA	Component
GO:0005783	endoplasmic reticulum	16209721.	IDA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	-	IDA	Component
GO:0015030	Cajal body	16209721.	IDA	Component
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	19946888.	HDA	Component
GO:0016604	nuclear body	-	IDA	Component
GO:0051168	nuclear export	16209721.	IDA	Process