EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000048991 (Gene tree)
Gene ID
23518
Gene Symbol
R3HDM1
Alias
KIAA0029|R3HDM
Full Name
R3H domain containing 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
193,816 bases
Position
chr2:135,531,455-135,725,270
Accession
9757
RBP type
canonical RBP
Summary
(R3H Domain Containing 1) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include nucleic acid binding. An important paralog of this gene is R3HDM2.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000405668R3HPF01424.221.1e-1111
ENSP00000386457R3HPF01424.226.4e-1111
ENSP00000486837R3HPF01424.226.4e-1111
ENSP00000386877R3HPF01424.227.4e-1111
ENSP00000264160R3HPF01424.227.6e-1111
ENSP00000387010R3HPF01424.227.6e-1111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
29581509The RNA-binding protein ARPP21 controls dendritic branching by functionally opposing the miRNA it hosts.Nat Commun2018 Mar 26Rehfeld Fdoi: 10.1038/s41467-018-03681-3.
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000456040R3HDM1-212851-ENSP00000405668284 (aa)-H7C2F9
ENST00000410054R3HDM1-2044442XM_017003729ENSP000003868771044 (aa)XP_016859218Q15032
ENST00000488035R3HDM1-219502--- (aa)--
ENST00000483065R3HDM1-216577--- (aa)--
ENST00000429703R3HDM1-2063443XM_017003733ENSP00000403406823 (aa)XP_016859222H7C207
ENST00000486532R3HDM1-217630--- (aa)--
ENST00000264160R3HDM1-2014648XM_005263627ENSP000002641601099 (aa)XP_005263684Q15032
ENST00000443537R3HDM1-210710--- (aa)--
ENST00000487294R3HDM1-218587--- (aa)--
ENST00000483021R3HDM1-215539--- (aa)--
ENST00000445855R3HDM1-211670-ENSP00000413763223 (aa)-H7C3T7
ENST00000463230R3HDM1-2132241--- (aa)--
ENST00000628915R3HDM1-2204325XM_011510875ENSP00000486837971 (aa)XP_011509177Q15032
ENST00000436436R3HDM1-207601-ENSP0000041608265 (aa)-C9JIX1
ENST00000425804R3HDM1-205581-ENSP00000387750194 (aa)-H7BZ47
ENST00000438014R3HDM1-208582-ENSP0000040409850 (aa)-C9JIX3
ENST00000480793R3HDM1-214235--- (aa)--
ENST00000441871R3HDM1-209556-ENSP00000402940186 (aa)-H7C1X4
ENST00000409478R3HDM1-2024272XM_011510874ENSP00000386457971 (aa)XP_011509176Q15032
ENST00000409606R3HDM1-2033673XM_005263626ENSP000003870101100 (aa)XP_005263683Q15032
Gene Model
Click here to download ENSG00000048991's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000048991Neuroblastoma3.35E-618463370
ENSG00000048991Neuroblastoma4.29E-618463370
ENSG00000048991Fetal Hemoglobin1.021e-005-
ENSG00000048991Triglycerides7.5860000E-005-
ENSG00000048991Triglycerides7.9490000E-005-
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000048991rs124658022135623778ABlood protein levels29875488[0.74-0.82] unit decrease0.78EFO_0007937
ENSG00000048991rs124658022135623778GMosquito bite size28199695[0.026-0.048] unit increase0.0368262EFO_0008378
ENSG00000048991rs67593212135565106THand grip strength29691431[0.0012-0.0028] unit increase0.002EFO_0006941
ENSG00000048991rs67593212135565106THand grip strength29691431[0.0014-0.0026] unit increase0.002EFO_0006941
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000048991's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000048991R3HDM19761.922ENSG00000179912R3HDM29272.222
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000048991R3HDM19764.931ENSAPOG00000020850r3hdm19263.467Acanthochromis_polyacanthus
ENSG00000048991R3HDM110095.014ENSAMEG00000014886R3HDM110095.195Ailuropoda_melanoleuca
ENSG00000048991R3HDM15869.697ENSACIG00000018791-8157.178Amphilophus_citrinellus
ENSG00000048991R3HDM19764.931ENSAOCG00000005192r3hdm19558.088Amphiprion_ocellaris
ENSG00000048991R3HDM19759.574ENSAPEG00000016108r3hdm19563.200Amphiprion_percula
ENSG00000048991R3HDM19962.903ENSATEG00000000232r3hdm19254.894Anabas_testudineus
ENSG00000048991R3HDM110078.681ENSAPLG00000015231R3HDM110078.952Anas_platyrhynchos
ENSG00000048991R3HDM19193.243ENSACAG00000001676R3HDM110076.903Anolis_carolinensis
ENSG00000048991R3HDM110098.365ENSANAG00000035334R3HDM110098.365Aotus_nancymaae
ENSG00000048991R3HDM19963.492ENSACLG00000027282r3hdm19462.133Astatotilapia_calliptera
ENSG00000048991R3HDM18057.576ENSAMXG00000020587arpp218539.000Astyanax_mexicanus
ENSG00000048991R3HDM19080.208ENSAMXG00000012861R3HDM110061.004Astyanax_mexicanus
ENSG00000048991R3HDM19781.159ENSAMXG00000003536r3hdm18974.603Astyanax_mexicanus
ENSG00000048991R3HDM110092.508ENSBTAG00000013302R3HDM110091.469Bos_taurus
ENSG00000048991R3HDM110097.909ENSCJAG00000011718R3HDM110097.909Callithrix_jacchus
ENSG00000048991R3HDM110095.195ENSCAFG00000005075R3HDM110095.376Canis_familiaris
ENSG00000048991R3HDM110095.739ENSCAFG00020016119R3HDM110095.830Canis_lupus_dingo
ENSG00000048991R3HDM110093.835ENSCHIG00000020851R3HDM110094.107Capra_hircus
ENSG00000048991R3HDM19980.919ENSCAPG00000013043-9880.919Cavia_aperea
ENSG00000048991R3HDM19991.889ENSCPOG00000012784R3HDM110094.304Cavia_porcellus
ENSG00000048991R3HDM199100.000ENSCCAG00000027199R3HDM110098.180Cebus_capucinus
ENSG00000048991R3HDM110099.262ENSCATG00000023642R3HDM110098.909Cercocebus_atys
ENSG00000048991R3HDM19993.286ENSCLAG00000007962R3HDM19993.286Chinchilla_lanigera
ENSG00000048991R3HDM19998.175ENSCSAG00000016356R3HDM110095.944Chlorocebus_sabaeus
ENSG00000048991R3HDM18093.939ENSCHOG00000013638R3HDM18194.118Choloepus_hoffmanni
ENSG00000048991R3HDM19690.541ENSCPBG00000009645R3HDM110091.144Chrysemys_picta_bellii
ENSG00000048991R3HDM110098.728ENSCANG00000034748R3HDM110098.728Colobus_angolensis_palliatus
ENSG00000048991R3HDM19398.649ENSCGRG00001012357R3hdm19788.791Cricetulus_griseus_chok1gshd
ENSG00000048991R3HDM19995.406ENSCGRG00000012080R3hdm19995.406Cricetulus_griseus_crigri
ENSG00000048991R3HDM18765.789ENSCSEG00000008944r3hdm18265.246Cynoglossus_semilaevis
ENSG00000048991R3HDM19764.236ENSCVAG00000007582r3hdm19161.067Cyprinodon_variegatus
ENSG00000048991R3HDM18949.451ENSDARG00000061081arpp219534.904Danio_rerio
ENSG00000048991R3HDM110091.531ENSDNOG00000000771R3HDM110090.983Dasypus_novemcinctus
ENSG00000048991R3HDM19996.466ENSDORG00000027689-9996.466Dipodomys_ordii
ENSG00000048991R3HDM19987.542ENSETEG00000013606R3HDM110083.848Echinops_telfairi
ENSG00000048991R3HDM17657.207ENSEBUG00000014746arpp219743.096Eptatretus_burgeri
ENSG00000048991R3HDM110098.066ENSEASG00005007392R3HDM110095.286Equus_asinus_asinus
ENSG00000048991R3HDM19998.066ENSECAG00000019114R3HDM110095.558Equus_caballus
ENSG00000048991R3HDM19189.630ENSEEUG00000012589R3HDM19187.061Erinaceus_europaeus
ENSG00000048991R3HDM18084.746ENSELUG00000014413r3hdm18778.339Esox_lucius
ENSG00000048991R3HDM19585.294ENSELUG00000004909R3HDM19956.157Esox_lucius
ENSG00000048991R3HDM110097.790ENSFCAG00000027113R3HDM110094.923Felis_catus
ENSG00000048991R3HDM19979.798ENSFALG00000013731R3HDM19367.056Ficedula_albicollis
ENSG00000048991R3HDM19994.346ENSFDAG00000016478R3HDM19994.346Fukomys_damarensis
ENSG00000048991R3HDM19765.957ENSFHEG00000018713r3hdm19161.867Fundulus_heteroclitus
ENSG00000048991R3HDM17282.609ENSGMOG00000006042-7465.217Gadus_morhua
ENSG00000048991R3HDM18889.610ENSGALG00000012246R3HDM19985.902Gallus_gallus
ENSG00000048991R3HDM19658.654ENSGAFG00000006203r3hdm19561.333Gambusia_affinis
ENSG00000048991R3HDM18668.269ENSGACG00000014925r3hdm19268.269Gasterosteus_aculeatus
ENSG00000048991R3HDM19589.189ENSGAGG00000007840R3HDM110078.552Gopherus_agassizii
ENSG00000048991R3HDM110099.455ENSGGOG00000008156R3HDM110099.455Gorilla_gorilla
ENSG00000048991R3HDM19961.667ENSHBUG00000015737R3HDM19058.206Haplochromis_burtoni
ENSG00000048991R3HDM19994.346ENSHGLG00000015718R3HDM19994.346Heterocephalus_glaber_female
ENSG00000048991R3HDM19982.963ENSHGLG00100015374-10073.550Heterocephalus_glaber_male
ENSG00000048991R3HDM19993.640ENSHGLG00100003184-9993.640Heterocephalus_glaber_male
ENSG00000048991R3HDM19859.494ENSHCOG00000013366r3hdm19160.322Hippocampus_comes
ENSG00000048991R3HDM18038.667ENSHCOG00000005036-5682.500Hippocampus_comes
ENSG00000048991R3HDM19232.407ENSIPUG00000020552arpp217438.011Ictalurus_punctatus
ENSG00000048991R3HDM19776.056ENSIPUG00000001676R3HDM19956.888Ictalurus_punctatus
ENSG00000048991R3HDM18968.615ENSIPUG00000013629r3hdm19569.497Ictalurus_punctatus
ENSG00000048991R3HDM110095.459ENSSTOG00000007572R3HDM110096.502Ictidomys_tridecemlineatus
ENSG00000048991R3HDM19993.640ENSJJAG00000018208-9993.640Jaculus_jaculus
ENSG00000048991R3HDM16352.066ENSKMAG00000013373-8977.193Kryptolebias_marmoratus
ENSG00000048991R3HDM16875.000ENSLBEG00000027981-8763.682Labrus_bergylta
ENSG00000048991R3HDM19790.541ENSLACG00000005334R3HDM110071.208Latimeria_chalumnae
ENSG00000048991R3HDM18782.432ENSLOCG00000001641r3hdm110066.815Lepisosteus_oculatus
ENSG00000048991R3HDM19993.568ENSLAFG00000009065R3HDM110091.109Loxodonta_africana
ENSG00000048991R3HDM110099.091ENSMFAG00000030331R3HDM1100100.000Macaca_fascicularis
ENSG00000048991R3HDM110098.999ENSMMUG00000009844R3HDM110098.999Macaca_mulatta
ENSG00000048991R3HDM110098.909ENSMNEG00000027793R3HDM1100100.000Macaca_nemestrina
ENSG00000048991R3HDM110099.182ENSMLEG00000043189R3HDM110099.182Mandrillus_leucophaeus
ENSG00000048991R3HDM19765.248ENSMAMG00000004532r3hdm19157.635Mastacembelus_armatus
ENSG00000048991R3HDM19963.492ENSMZEG00005003157r3hdm19557.108Maylandia_zebra
ENSG00000048991R3HDM110078.229ENSMGAG00000012461R3HDM110078.410Meleagris_gallopavo
ENSG00000048991R3HDM19995.760ENSMAUG00000010315R3hdm19995.760Mesocricetus_auratus
ENSG00000048991R3HDM19592.100ENSMICG00000042655-9498.366Microcebus_murinus
ENSG00000048991R3HDM19996.907ENSMICG00000005900-10094.280Microcebus_murinus
ENSG00000048991R3HDM19995.406ENSMOCG00000019833-9995.406Microtus_ochrogaster
ENSG00000048991R3HDM19982.792ENSMODG00000000923R3HDM19777.852Monodelphis_domestica
ENSG00000048991R3HDM19168.939ENSMALG00000009000r3hdm19158.065Monopterus_albus
ENSG00000048991R3HDM19994.700MGP_CAROLIEiJ_G0014543R3hdm110094.561Mus_caroli
ENSG00000048991R3HDM19994.700ENSMUSG00000056211R3hdm110094.561Mus_musculus
ENSG00000048991R3HDM19994.346MGP_PahariEiJ_G0027779R3hdm110094.561Mus_pahari
ENSG00000048991R3HDM19994.700MGP_SPRETEiJ_G0015350R3hdm110094.561Mus_spretus
ENSG00000048991R3HDM110094.651ENSMPUG00000002412R3HDM110094.832Mustela_putorius_furo
ENSG00000048991R3HDM110093.038ENSMLUG00000013824R3HDM110093.038Myotis_lucifugus
ENSG00000048991R3HDM19995.053ENSNGAG00000001313-9995.053Nannospalax_galili
ENSG00000048991R3HDM110099.425ENSNLEG00000008622R3HDM110099.425Nomascus_leucogenys
ENSG00000048991R3HDM18875.439ENSMEUG00000011784R3HDM110073.014Notamacropus_eugenii
ENSG00000048991R3HDM197100.000ENSODEG00000008607R3HDM19994.700Octodon_degus
ENSG00000048991R3HDM19466.873ENSONIG00000012017r3hdm19166.873Oreochromis_niloticus
ENSG00000048991R3HDM19987.879ENSOANG00000007987R3HDM110081.785Ornithorhynchus_anatinus
ENSG00000048991R3HDM19991.246ENSOCUG00000017366R3HDM19894.004Oryctolagus_cuniculus
ENSG00000048991R3HDM19765.125ENSORLG00000004297r3hdm19060.638Oryzias_latipes
ENSG00000048991R3HDM19765.125ENSORLG00020019252-9360.477Oryzias_latipes_hni
ENSG00000048991R3HDM19765.125ENSORLG00015017355r3hdm19161.067Oryzias_latipes_hsok
ENSG00000048991R3HDM19765.278ENSOMEG00000003882-9458.317Oryzias_melastigma
ENSG00000048991R3HDM110093.019ENSOGAG00000003136R3HDM110093.200Otolemur_garnettii
ENSG00000048991R3HDM110093.654ENSOARG00000010788R3HDM110093.926Ovis_aries
ENSG00000048991R3HDM110099.819ENSPPAG00000027858R3HDM110099.819Pan_paniscus
ENSG00000048991R3HDM110094.559ENSPPRG00000002626R3HDM110094.661Panthera_pardus
ENSG00000048991R3HDM110094.559ENSPTIG00000016581R3HDM110094.661Panthera_tigris_altaica
ENSG00000048991R3HDM110099.818ENSPTRG00000012494R3HDM110099.818Pan_troglodytes
ENSG00000048991R3HDM110099.091ENSPANG00000026448R3HDM110099.091Papio_anubis
ENSG00000048991R3HDM19476.358ENSPKIG00000004328r3hdm19176.677Paramormyrops_kingsleyae
ENSG00000048991R3HDM19966.316ENSPKIG00000011224R3HDM19363.366Paramormyrops_kingsleyae
ENSG00000048991R3HDM18895.946ENSPSIG00000012915R3HDM110079.024Pelodiscus_sinensis
ENSG00000048991R3HDM16175.000ENSPMGG00000011264-8457.178Periophthalmus_magnuspinnatus
ENSG00000048991R3HDM19995.406ENSPEMG00000015187R3hdm19995.406Peromyscus_maniculatus_bairdii
ENSG00000048991R3HDM19155.053ENSPMAG00000003369-9843.249Petromyzon_marinus
ENSG00000048991R3HDM110090.659ENSPCIG00000002491R3HDM110084.324Phascolarctos_cinereus
ENSG00000048991R3HDM19166.667ENSPFOG00000015036r3hdm19455.474Poecilia_formosa
ENSG00000048991R3HDM18960.000ENSPLAG00000018042r3hdm19159.947Poecilia_latipinna
ENSG00000048991R3HDM18960.000ENSPMEG00000023947r3hdm19159.947Poecilia_mexicana
ENSG00000048991R3HDM18571.138ENSPREG00000007902r3hdm19460.000Poecilia_reticulata
ENSG00000048991R3HDM199100.000ENSPPYG00000012815R3HDM110098.364Pongo_abelii
ENSG00000048991R3HDM19987.879ENSPCAG00000006208R3HDM110081.670Procavia_capensis
ENSG00000048991R3HDM19996.907ENSPCOG00000012698R3HDM110094.127Propithecus_coquereli
ENSG00000048991R3HDM19991.852ENSPVAG00000006098R3HDM110086.038Pteropus_vampyrus
ENSG00000048991R3HDM19961.667ENSPNYG00000008701-9761.005Pundamilia_nyererei
ENSG00000048991R3HDM18876.603ENSPNAG00000005436R3HDM19976.527Pygocentrus_nattereri
ENSG00000048991R3HDM18056.332ENSPNAG00000004162arpp215850.388Pygocentrus_nattereri
ENSG00000048991R3HDM19579.710ENSPNAG00000013952r3hdm19570.541Pygocentrus_nattereri
ENSG00000048991R3HDM193100.000ENSRNOG00000004099R3hdm110086.972Rattus_norvegicus
ENSG00000048991R3HDM110098.042ENSRBIG00000033317R3HDM110099.631Rhinopithecus_bieti
ENSG00000048991R3HDM110099.448ENSRROG00000034534R3HDM110098.818Rhinopithecus_roxellana
ENSG00000048991R3HDM110097.727ENSSBOG00000020389R3HDM110097.727Saimiri_boliviensis_boliviensis
ENSG00000048991R3HDM19987.584ENSSHAG00000016999R3HDM110084.344Sarcophilus_harrisii
ENSG00000048991R3HDM19375.342ENSSFOG00015019851-10056.572Scleropages_formosus
ENSG00000048991R3HDM19286.765ENSSFOG00015014134r3hdm110070.631Scleropages_formosus
ENSG00000048991R3HDM19960.541ENSSMAG00000001669r3hdm19944.703Scophthalmus_maximus
ENSG00000048991R3HDM19963.492ENSSDUG00000010749r3hdm19162.766Seriola_dumerili
ENSG00000048991R3HDM19963.492ENSSLDG00000004499r3hdm19157.457Seriola_lalandi_dorsalis
ENSG00000048991R3HDM19977.778ENSSARG00000000352-6982.724Sorex_araneus
ENSG00000048991R3HDM18895.946ENSSPUG00000004167R3HDM110080.307Sphenodon_punctatus
ENSG00000048991R3HDM19766.312ENSSPAG00000004648r3hdm19163.467Stegastes_partitus
ENSG00000048991R3HDM110097.238ENSSSCG00000015692R3HDM110095.104Sus_scrofa
ENSG00000048991R3HDM19979.461ENSTGUG00000011750R3HDM110073.622Taeniopygia_guttata
ENSG00000048991R3HDM18167.532ENSTRUG00000011654r3hdm19157.841Takifugu_rubripes
ENSG00000048991R3HDM19461.842ENSTNIG00000010362r3hdm19546.519Tetraodon_nigroviridis
ENSG00000048991R3HDM19991.111ENSTTRG00000003935R3HDM110088.123Tursiops_truncatus
ENSG00000048991R3HDM19992.929ENSUAMG00000024806R3HDM19396.649Ursus_americanus
ENSG00000048991R3HDM110094.148ENSUMAG00000005552R3HDM110094.251Ursus_maritimus
ENSG00000048991R3HDM19995.946ENSVPAG00000007333R3HDM19391.228Vicugna_pacos
ENSG00000048991R3HDM110097.790ENSVVUG00000006457R3HDM110092.870Vulpes_vulpes
ENSG00000048991R3HDM18789.041ENSXETG00000019330r3hdm110067.472Xenopus_tropicalis
ENSG00000048991R3HDM18961.842ENSXCOG00000017448r3hdm19450.582Xiphophorus_couchianus
ENSG00000048991R3HDM18670.196ENSXMAG00000007885r3hdm18861.867Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction

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