EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000054118 (Gene tree)
Gene ID
9967
Gene Symbol
THRAP3
Alias
TRAP150|BCLAF2
Full Name
thyroid hormone receptor associated protein 3
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
80,942 bases
Position
chr1:36,224,416-36,305,357
Accession
22964
RBP type
canonical RBP
Summary
(Thyroid Hormone Receptor Associated Protein 3) is a Protein Coding gene. Diseases associated with THRAP3 include Wilms Tumor 1. Among its related pathways are Developmental Biology and Metabolism. Gene Ontology (GO) annotations related to this gene include transcription coactivator activity. An important paralog of this gene is BCLAF1.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000498001THRAP3_BCLAF1PF15440.64.6e-20811
ENSP00000346634THRAP3_BCLAF1PF15440.65.3e-20811
ENSP00000433825THRAP3_BCLAF1PF15440.65.3e-20811
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNANascentRICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
26261210TRAP150 interacts with the RNA-binding domain of PSF and antagonizes splicing of numerous PSF-target genes in T cells.Nucleic Acids Res2015 Oct 15Yarosh CAdoi: 10.1093/nar/gkv816
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000354618THRAP3-2014432XM_024451301ENSP00000346634955 (aa)XP_024307069Q9Y2W1
ENST00000466743THRAP3-202537--- (aa)--
ENST00000469141THRAP3-2033339-ENSP00000433825955 (aa)-Q9Y2W1
ENST00000648638THRAP3-2043825-ENSP00000498001910 (aa)--
Gene Model
Click here to download ENSG00000054118's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000054118's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000054118THRAP35256.977ENSAPOG00000001848thrap3b5460.714Acanthochromis_polyacanthus
ENSG00000054118THRAP310095.725ENSAMEG00000000379THRAP310095.725Ailuropoda_melanoleuca
ENSG00000054118THRAP36938.495ENSACIG00000015331thrap3b5462.500Amphilophus_citrinellus
ENSG00000054118THRAP35349.770ENSAOCG00000015572thrap3b5461.176Amphiprion_ocellaris
ENSG00000054118THRAP36638.507ENSATEG00000006350thrap3b5657.303Anabas_testudineus
ENSG00000054118THRAP39480.306ENSAPLG00000009009THRAP39481.352Anas_platyrhynchos
ENSG00000054118THRAP39493.016ENSANAG00000023367-9492.794Aotus_nancymaae
ENSG00000054118THRAP310098.325ENSANAG00000024479-10098.325Aotus_nancymaae
ENSG00000054118THRAP35154.167ENSACLG00000004763thrap3b6737.275Astatotilapia_calliptera
ENSG00000054118THRAP36537.428ENSAMXG00000020877thrap3b5838.324Astyanax_mexicanus
ENSG00000054118THRAP36539.225ENSBTAG00000007802BCLAF16053.731Bos_taurus
ENSG00000054118THRAP310096.767ENSBTAG00000024095THRAP310096.767Bos_taurus
ENSG00000054118THRAP310098.639ENSCJAG00000001754THRAP310098.639Callithrix_jacchus
ENSG00000054118THRAP310096.246ENSCAFG00000003389THRAP310096.246Canis_familiaris
ENSG00000054118THRAP36539.070ENSCAFG00000000245BCLAF17038.519Canis_familiaris
ENSG00000054118THRAP310096.246ENSCAFG00020008982THRAP310096.246Canis_lupus_dingo
ENSG00000054118THRAP36539.070ENSCAFG00020022554BCLAF17437.320Canis_lupus_dingo
ENSG00000054118THRAP310096.246ENSCHIG00000022784THRAP310096.246Capra_hircus
ENSG00000054118THRAP36539.225ENSCHIG00000000525BCLAF16937.645Capra_hircus
ENSG00000054118THRAP39679.761ENSTSYG00000011370-8378.646Carlito_syrichta
ENSG00000054118THRAP310097.497ENSTSYG00000012214-10097.497Carlito_syrichta
ENSG00000054118THRAP310095.099ENSCPOG00000015742THRAP310095.099Cavia_porcellus
ENSG00000054118THRAP310098.743ENSCCAG00000028401THRAP310098.743Cebus_capucinus
ENSG00000054118THRAP39571.167ENSCATG00000035101-9971.190Cercocebus_atys
ENSG00000054118THRAP310099.372ENSCATG00000038343-10099.372Cercocebus_atys
ENSG00000054118THRAP39495.354ENSCLAG00000013043THRAP39495.354Chinchilla_lanigera
ENSG00000054118THRAP310099.058ENSCSAG00000001098THRAP310099.058Chlorocebus_sabaeus
ENSG00000054118THRAP39182.289ENSCHOG00000008973THRAP381100.000Choloepus_hoffmanni
ENSG00000054118THRAP39481.538ENSCPBG00000018530THRAP39481.031Chrysemys_picta_bellii
ENSG00000054118THRAP310099.372ENSCANG00000043028THRAP310099.372Colobus_angolensis_palliatus
ENSG00000054118THRAP36538.414ENSCGRG00001024620-6253.731Cricetulus_griseus_chok1gshd
ENSG00000054118THRAP39493.363ENSCGRG00001003105Thrap39493.363Cricetulus_griseus_chok1gshd
ENSG00000054118THRAP39493.363ENSCGRG00000017028Thrap39493.363Cricetulus_griseus_crigri
ENSG00000054118THRAP36538.569ENSCGRG00000009622-6053.731Cricetulus_griseus_crigri
ENSG00000054118THRAP39493.473ENSDNOG00000031470THRAP39494.027Dasypus_novemcinctus
ENSG00000054118THRAP36539.286ENSDORG00000015144Bclaf17037.700Dipodomys_ordii
ENSG00000054118THRAP39494.020ENSDORG00000013216Thrap39494.020Dipodomys_ordii
ENSG00000054118THRAP37887.832ENSETEG00000003542THRAP39387.832Echinops_telfairi
ENSG00000054118THRAP310096.455ENSEASG00005012182THRAP310096.455Equus_asinus_asinus
ENSG00000054118THRAP36539.070ENSEASG00005011177BCLAF15853.731Equus_asinus_asinus
ENSG00000054118THRAP310096.455ENSECAG00000021207THRAP310096.455Equus_caballus
ENSG00000054118THRAP36539.070ENSECAG00000023692BCLAF16053.731Equus_caballus
ENSG00000054118THRAP36594.773ENSEEUG00000004939THRAP37694.773Erinaceus_europaeus
ENSG00000054118THRAP39440.123ENSELUG00000017733thrap3a6842.256Esox_lucius
ENSG00000054118THRAP310096.663ENSFCAG00000014127THRAP310096.663Felis_catus
ENSG00000054118THRAP36538.915ENSFCAG00000027614BCLAF16053.731Felis_catus
ENSG00000054118THRAP39278.220ENSFALG00000000840THRAP39575.773Ficedula_albicollis
ENSG00000054118THRAP39494.463ENSFDAG00000009011THRAP39494.795Fukomys_damarensis
ENSG00000054118THRAP39479.080ENSGALG00000002144THRAP39480.437Gallus_gallus
ENSG00000054118THRAP39481.868ENSGAGG00000024863THRAP39481.360Gopherus_agassizii
ENSG00000054118THRAP310099.895ENSGGOG00000006917THRAP310099.895Gorilla_gorilla
ENSG00000054118THRAP35154.167ENSHBUG00000001708thrap3b6737.425Haplochromis_burtoni
ENSG00000054118THRAP35886.578ENSHGLG00000015805-9083.459Heterocephalus_glaber_female
ENSG00000054118THRAP39492.913ENSHGLG00000019374THRAP39492.580Heterocephalus_glaber_female
ENSG00000054118THRAP39492.913ENSHGLG00100007382THRAP39492.580Heterocephalus_glaber_male
ENSG00000054118THRAP35886.200ENSHGLG00100015946-9083.083Heterocephalus_glaber_male
ENSG00000054118THRAP37038.219ENSIPUG00000005707thrap3b5743.199Ictalurus_punctatus
ENSG00000054118THRAP39495.243ENSSTOG00000000602THRAP39495.243Ictidomys_tridecemlineatus
ENSG00000054118THRAP36538.760ENSSTOG00000013977BCLAF15865.217Ictidomys_tridecemlineatus
ENSG00000054118THRAP39134.250ENSKMAG00000005707thrap3a7036.052Kryptolebias_marmoratus
ENSG00000054118THRAP39496.128ENSLAFG00000009587THRAP39496.128Loxodonta_africana
ENSG00000054118THRAP36538.794ENSLAFG00000015982BCLAF17037.246Loxodonta_africana
ENSG00000054118THRAP310099.372ENSMFAG00000040144-10099.372Macaca_fascicularis
ENSG00000054118THRAP39570.383ENSMFAG00000045419-9169.487Macaca_fascicularis
ENSG00000054118THRAP310099.372ENSMMUG00000014622THRAP310099.372Macaca_mulatta
ENSG00000054118THRAP39570.800ENSMNEG00000042630-9971.375Macaca_nemestrina
ENSG00000054118THRAP39494.279ENSMNEG00000018987-9494.279Macaca_nemestrina
ENSG00000054118THRAP310099.372ENSMLEG00000028924THRAP310099.372Mandrillus_leucophaeus
ENSG00000054118THRAP39336.021ENSMAMG00000007707thrap3a7259.813Mastacembelus_armatus
ENSG00000054118THRAP35154.167ENSMZEG00005026309thrap3b7136.390Maylandia_zebra
ENSG00000054118THRAP38579.847ENSMGAG00000003640THRAP39380.280Meleagris_gallopavo
ENSG00000054118THRAP36638.889ENSMAUG00000020380Bclaf15865.217Mesocricetus_auratus
ENSG00000054118THRAP39493.142ENSMAUG00000019723Thrap39493.142Mesocricetus_auratus
ENSG00000054118THRAP310096.872ENSMICG00000007920-10096.872Microcebus_murinus
ENSG00000054118THRAP39292.536ENSMICG00000042555-8992.816Microcebus_murinus
ENSG00000054118THRAP36538.820ENSMICG00000004946BCLAF16053.731Microcebus_murinus
ENSG00000054118THRAP39475.801ENSMOCG00000006712-8376.031Microtus_ochrogaster
ENSG00000054118THRAP39484.718ENSMOCG00000004435-9484.385Microtus_ochrogaster
ENSG00000054118THRAP39492.588ENSMOCG00000005500-9492.588Microtus_ochrogaster
ENSG00000054118THRAP39477.031ENSMODG00000017834-9975.705Monodelphis_domestica
ENSG00000054118THRAP36740.379ENSMALG00000012582thrap3b6839.577Monopterus_albus
ENSG00000054118THRAP36538.321MGP_CAROLIEiJ_G0015157Bclaf17533.954Mus_caroli
ENSG00000054118THRAP39492.367ENSMUSG00000043962Thrap310098.824Mus_musculus
ENSG00000054118THRAP36738.542ENSMUSG00000037608Bclaf19432.383Mus_musculus
ENSG00000054118THRAP39492.478MGP_PahariEiJ_G0028802-10098.824Mus_pahari
ENSG00000054118THRAP36738.542MGP_SPRETEiJ_G0015965Bclaf19431.261Mus_spretus
ENSG00000054118THRAP39486.681MGP_SPRETEiJ_G0027450Thrap310098.824Mus_spretus
ENSG00000054118THRAP36538.760ENSMPUG00000014831BCLAF16937.064Mustela_putorius_furo
ENSG00000054118THRAP39495.465ENSMPUG00000014809THRAP39495.465Mustela_putorius_furo
ENSG00000054118THRAP39495.243ENSMLUG00000006447THRAP39495.243Myotis_lucifugus
ENSG00000054118THRAP39494.463ENSNGAG00000010876Thrap39494.463Nannospalax_galili
ENSG00000054118THRAP310099.267ENSNLEG00000011359THRAP310099.267Nomascus_leucogenys
ENSG00000054118THRAP35487.500ENSMEUG00000015508-6395.833Notamacropus_eugenii
ENSG00000054118THRAP35066.372ENSOPRG00000012771BCLAF15160.194Ochotona_princeps
ENSG00000054118THRAP39193.622ENSOPRG00000001637THRAP39494.826Ochotona_princeps
ENSG00000054118THRAP367100.000ENSODEG00000006090-77100.000Octodon_degus
ENSG00000054118THRAP35060.784ENSODEG00000000384-5259.551Octodon_degus
ENSG00000054118THRAP37579.706ENSODEG00000010768-9277.172Octodon_degus
ENSG00000054118THRAP39487.859ENSOANG00000002070THRAP39487.859Ornithorhynchus_anatinus
ENSG00000054118THRAP39495.796ENSOCUG00000005323THRAP39495.796Oryctolagus_cuniculus
ENSG00000054118THRAP36539.070ENSOCUG00000016363-6937.464Oryctolagus_cuniculus
ENSG00000054118THRAP39490.700ENSOGAG00000002648THRAP39491.189Otolemur_garnettii
ENSG00000054118THRAP310096.455ENSOARG00000019668THRAP310096.455Ovis_aries
ENSG00000054118THRAP36539.104ENSOARG00000000096BCLAF17037.536Ovis_aries
ENSG00000054118THRAP310099.895ENSPPAG00000028961THRAP310099.895Pan_paniscus
ENSG00000054118THRAP36538.915ENSPPRG00000023156-6053.731Panthera_pardus
ENSG00000054118THRAP310096.767ENSPPRG00000001735THRAP310096.767Panthera_pardus
ENSG00000054118THRAP310096.767ENSPTIG00000016888THRAP310096.767Panthera_tigris_altaica
ENSG00000054118THRAP36538.915ENSPTIG00000019385BCLAF16053.731Panthera_tigris_altaica
ENSG00000054118THRAP3100100.000ENSPTRG00000000535THRAP3100100.000Pan_troglodytes
ENSG00000054118THRAP310099.267ENSPANG00000010532THRAP310099.267Papio_anubis
ENSG00000054118THRAP36835.030ENSPKIG00000003697thrap3b5863.077Paramormyrops_kingsleyae
ENSG00000054118THRAP37245.082ENSPKIG00000005150thrap3a7347.178Paramormyrops_kingsleyae
ENSG00000054118THRAP38581.266ENSPSIG00000010296THRAP38181.187Pelodiscus_sinensis
ENSG00000054118THRAP39492.810ENSPEMG00000023512-9492.810Peromyscus_maniculatus_bairdii
ENSG00000054118THRAP310080.793ENSPEMG00000019304-9784.063Peromyscus_maniculatus_bairdii
ENSG00000054118THRAP39486.492ENSPCIG00000024805THRAP39485.839Phascolarctos_cinereus
ENSG00000054118THRAP39232.924ENSPFOG00000013297thrap3a6735.038Poecilia_formosa
ENSG00000054118THRAP39232.183ENSPREG00000005816thrap3a5363.636Poecilia_reticulata
ENSG00000054118THRAP35994.025ENSPPYG00000001544-9993.849Pongo_abelii
ENSG00000054118THRAP39489.357ENSPCAG00000008951THRAP39489.357Procavia_capensis
ENSG00000054118THRAP36538.820ENSPCOG00000014683BCLAF16053.731Propithecus_coquereli
ENSG00000054118THRAP310097.080ENSPCOG00000027521THRAP310097.080Propithecus_coquereli
ENSG00000054118THRAP38295.360ENSPVAG00000008632THRAP38295.360Pteropus_vampyrus
ENSG00000054118THRAP35154.167ENSPNYG00000003062thrap3b5660.714Pundamilia_nyererei
ENSG00000054118THRAP39492.810ENSRNOG00000009977Thrap39492.810Rattus_norvegicus
ENSG00000054118THRAP39495.565ENSRBIG00000031284THRAP39495.565Rhinopithecus_bieti
ENSG00000054118THRAP310099.162ENSRROG00000028592THRAP310099.162Rhinopithecus_roxellana
ENSG00000054118THRAP310098.639ENSSBOG00000029130THRAP310098.639Saimiri_boliviensis_boliviensis
ENSG00000054118THRAP36538.450ENSSHAG00000010721BCLAF16737.611Sarcophilus_harrisii
ENSG00000054118THRAP39485.777ENSSHAG00000017932THRAP39484.344Sarcophilus_harrisii
ENSG00000054118THRAP36847.550ENSSFOG00015020057thrap36647.826Scleropages_formosus
ENSG00000054118THRAP36937.624ENSSMAG00000001259thrap3b7959.551Scophthalmus_maximus
ENSG00000054118THRAP39435.853ENSSMAG00000003703thrap3a5143.825Scophthalmus_maximus
ENSG00000054118THRAP39237.684ENSSDUG00000010132thrap3a6342.951Seriola_dumerili
ENSG00000054118THRAP39237.406ENSSLDG00000003306thrap3a6142.787Seriola_lalandi_dorsalis
ENSG00000054118THRAP39494.580ENSSARG00000006424THRAP39494.580Sorex_araneus
ENSG00000054118THRAP39476.821ENSSPUG00000001120THRAP39476.432Sphenodon_punctatus
ENSG00000054118THRAP310096.350ENSSSCG00000029954THRAP310096.350Sus_scrofa
ENSG00000054118THRAP36638.485ENSSSCG00000004163BCLAF16937.355Sus_scrofa
ENSG00000054118THRAP39480.373ENSTGUG00000001606THRAP39480.853Taeniopygia_guttata
ENSG00000054118THRAP360100.000ENSTBEG00000016264THRAP366100.000Tupaia_belangeri
ENSG00000054118THRAP36538.915ENSTTRG00000002543BCLAF16937.053Tursiops_truncatus
ENSG00000054118THRAP39495.907ENSTTRG00000015101THRAP39495.907Tursiops_truncatus
ENSG00000054118THRAP310096.350ENSUAMG00000015685THRAP310096.350Ursus_americanus
ENSG00000054118THRAP310096.350ENSUMAG00000001744THRAP310096.350Ursus_maritimus
ENSG00000054118THRAP39190.723ENSVPAG00000004656THRAP39490.000Vicugna_pacos
ENSG00000054118THRAP310096.350ENSVVUG00000000118THRAP310096.350Vulpes_vulpes
ENSG00000054118THRAP36832.523ENSXETG00000033794bclaf17131.050Xenopus_tropicalis
ENSG00000054118THRAP39460.984ENSXETG00000003925thrap39457.034Xenopus_tropicalis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000381regulation of alternative mRNA splicing, via spliceosome20932480.IMPProcess
GO:0000956nuclear-transcribed mRNA catabolic process20123736.IDAProcess
GO:0000980RNA polymerase II distal enhancer sequence-specific DNA binding-ISSFunction
GO:0003712transcription coregulator activity10198638.12218053.IDAFunction
GO:0003713transcription coactivator activity12037571.IDAFunction
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005515protein binding18596238.18794151.20123736.20467437.20932480.23084401.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus10235267.20123736.IDAComponent
GO:0005654nucleoplasm24100041.IDAComponent
GO:0006367transcription initiation from RNA polymerase II promoter12218053.IDAProcess
GO:0006397mRNA processing-IEAProcess
GO:0007623circadian rhythm-IEAProcess
GO:0008380RNA splicing-IEAProcess
GO:0016592mediator complex10198638.12037571.IDAComponent
GO:0016607nuclear speck24100041.IDAComponent
GO:0030374nuclear receptor transcription coactivator activity12218053.IDAFunction
GO:0030374nuclear receptor transcription coactivator activity10235266.NASFunction
GO:0035145exon-exon junction complex20123736.IDAComponent
GO:0042753positive regulation of circadian rhythm24043798.IMPProcess
GO:0042809vitamin D receptor binding10235266.NASFunction
GO:0045893positive regulation of transcription, DNA-templated10198638.IDAProcess
GO:0045944positive regulation of transcription by RNA polymerase II12037571.IDAProcess
GO:0046966thyroid hormone receptor binding10198638.IDAFunction
GO:0048026positive regulation of mRNA splicing, via spliceosome20123736.IMPProcess
GO:0048255mRNA stabilization18794151.IMPProcess
GO:0051219phosphoprotein binding20932480.IDAFunction
GO:0070062extracellular exosome18570454.HDAComponent

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