EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000055950 (Gene tree)
Gene ID
84545
Gene Symbol
MRPL43
Alias
bMRP36a
Full Name
mitochondrial ribosomal protein L43
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
18,058 bases
Position
chr10:100,969,458-100,987,515
Accession
14517
RBP type
canonical RBP
Summary
Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. This gene and the gene for a semaphorin class 4 protein (SEMA4G) overlap at map location 10q24.31 and are transcribed in opposite directions. Sequence analysis identified multiple transcript variants encoding at least four different protein isoforms. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000315948L51_S25_CI-B8PF05047.168.6e-1111
ENSP00000359256L51_S25_CI-B8PF05047.168.6e-1111
ENSP00000359254L51_S25_CI-B8PF05047.169.3e-1111
ENSP00000408806L51_S25_CI-B8PF05047.161e-1011
ENSP00000359261L51_S25_CI-B8PF05047.161.1e-1011
ENSP00000299179L51_S25_CI-B8PF05047.161.4e-1011
ENSP00000315364L51_S25_CI-B8PF05047.161.5e-1011
ENSP00000339844L51_S25_CI-B8PF05047.161.7e-1011
ENSP00000359262L51_S25_CI-B8PF05047.162.1e-1011
ENSP00000430369L51_S25_CI-B8PF05047.163e-0911
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000487059MRPL43-212810--- (aa)--
ENST00000477279MRPL43-211903-ENSP0000047100444 (aa)-M0R051
ENST00000523148MRPL43-214844-ENSP00000430369148 (aa)-H0YBU8
ENST00000476012MRPL43-210539--- (aa)--
ENST00000342071MRPL43-204894-ENSP00000339844235 (aa)-Q8N983
ENST00000448244MRPL43-209727-ENSP00000408806169 (aa)-H0Y6Y8
ENST00000318364MRPL43-2031010XM_006718035ENSP00000315948159 (aa)XP_006718098Q8N983
ENST00000318325MRPL43-2022134-ENSP00000315364215 (aa)-Q8N983
ENST00000299179MRPL43-201747-ENSP00000299179202 (aa)-Q8N983
ENST00000370236MRPL43-206866XM_005270231ENSP00000359256159 (aa)XP_005270288Q8N983
ENST00000370242MRPL43-208884-ENSP00000359262261 (aa)-Q8N983
ENST00000370241MRPL43-207824-ENSP00000359261184 (aa)-B1AL05
ENST00000493646MRPL43-213897--- (aa)--
ENST00000370234MRPL43-205798-ENSP00000359254164 (aa)-Q8N983
Gene Model
Click here to download ENSG00000055950's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000055950's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000055950MRPL439564.286ENSAPOG00000020476mrpl4310060.000Acanthochromis_polyacanthus
ENSG00000055950MRPL439491.333ENSAMEG00000017570MRPL439782.879Ailuropoda_melanoleuca
ENSG00000055950MRPL439564.286ENSACIG00000010217mrpl439759.864Amphilophus_citrinellus
ENSG00000055950MRPL439566.667ENSAOCG00000009295mrpl4310061.589Amphiprion_ocellaris
ENSG00000055950MRPL439566.667ENSAPEG00000002700mrpl4310061.589Amphiprion_percula
ENSG00000055950MRPL439561.905ENSATEG00000006106mrpl439960.265Anabas_testudineus
ENSG00000055950MRPL439869.767ENSACAG00000003798MRPL439066.429Anolis_carolinensis
ENSG00000055950MRPL439897.674ENSANAG00000034938MRPL4310094.578Aotus_nancymaae
ENSG00000055950MRPL439865.116ENSACLG00000026075mrpl439761.905Astatotilapia_calliptera
ENSG00000055950MRPL439569.048ENSAMXG00000039634mrpl439363.504Astyanax_mexicanus
ENSG00000055950MRPL4310088.679ENSBTAG00000003294MRPL4310088.679Bos_taurus
ENSG00000055950MRPL438235.878WBGene00007712mrpl-346935.878Caenorhabditis_elegans
ENSG00000055950MRPL4310089.937ENSCJAG00000043882-7289.937Callithrix_jacchus
ENSG00000055950MRPL439897.674ENSCJAG00000017480-10095.413Callithrix_jacchus
ENSG00000055950MRPL439889.697ENSCAFG00000009742MRPL4310084.291Canis_familiaris
ENSG00000055950MRPL439990.446ENSCAFG00020009048MRPL439990.446Canis_lupus_dingo
ENSG00000055950MRPL4310089.308ENSCHIG00000023474MRPL4310089.308Capra_hircus
ENSG00000055950MRPL4310088.050ENSCPOG00000040768MRPL4310088.050Cavia_porcellus
ENSG00000055950MRPL439897.674ENSCCAG00000027213MRPL4310094.578Cebus_capucinus
ENSG00000055950MRPL4398100.000ENSCATG00000045001MRPL4310097.283Cercocebus_atys
ENSG00000055950MRPL4310088.679ENSCLAG00000003510MRPL4310088.679Chinchilla_lanigera
ENSG00000055950MRPL4310098.113ENSCSAG00000005558MRPL4310098.113Chlorocebus_sabaeus
ENSG00000055950MRPL439876.744ENSCPBG00000003402MRPL439072.143Chrysemys_picta_bellii
ENSG00000055950MRPL439142.500ENSCING00000022368-9643.066Ciona_intestinalis
ENSG00000055950MRPL438394.931ENSCANG00000032493MRPL4310095.288Colobus_angolensis_palliatus
ENSG00000055950MRPL439888.372ENSCGRG00001003475Mrpl4310084.277Cricetulus_griseus_chok1gshd
ENSG00000055950MRPL439862.791ENSCSEG00000010410mrpl439558.503Cynoglossus_semilaevis
ENSG00000055950MRPL439564.286ENSCVAG00000008026mrpl439758.219Cyprinodon_variegatus
ENSG00000055950MRPL439566.667ENSDARG00000076334mrpl439957.534Danio_rerio
ENSG00000055950MRPL439890.698ENSDNOG00000003835MRPL4310078.707Dasypus_novemcinctus
ENSG00000055950MRPL439893.023ENSDORG00000023986Mrpl4310085.806Dipodomys_ordii
ENSG00000055950MRPL437946.457FBgn0034893mRpL436646.457Drosophila_melanogaster
ENSG00000055950MRPL439886.047ENSETEG00000012498MRPL4310070.881Echinops_telfairi
ENSG00000055950MRPL439862.791ENSEBUG00000002711mrpl436658.088Eptatretus_burgeri
ENSG00000055950MRPL439389.865ENSEASG00005008925MRPL4310089.865Equus_asinus_asinus
ENSG00000055950MRPL439888.372ENSEEUG00000004807MRPL4310074.713Erinaceus_europaeus
ENSG00000055950MRPL439862.791ENSELUG00000010110RM439761.224Esox_lucius
ENSG00000055950MRPL439992.405ENSFCAG00000015693MRPL4310088.235Felis_catus
ENSG00000055950MRPL439865.116ENSFALG00000008683MRPL439761.486Ficedula_albicollis
ENSG00000055950MRPL439564.286ENSGMOG00000009899mrpl439662.500Gadus_morhua
ENSG00000055950MRPL439865.116ENSGALG00000034352MRPL439764.384Gallus_gallus
ENSG00000055950MRPL439564.286ENSGAFG00000012028mrpl438456.463Gambusia_affinis
ENSG00000055950MRPL439564.286ENSGACG00000003498mrpl438864.234Gasterosteus_aculeatus
ENSG00000055950MRPL439874.419ENSGAGG00000018795MRPL439768.874Gopherus_agassizii
ENSG00000055950MRPL43100100.000ENSGGOG00000023716MRPL43100100.000Gorilla_gorilla
ENSG00000055950MRPL439865.116ENSHBUG00000006858mrpl439960.000Haplochromis_burtoni
ENSG00000055950MRPL439888.372ENSHGLG00000002213MRPL439988.679Heterocephalus_glaber_female
ENSG00000055950MRPL439566.667ENSHCOG00000011406mrpl439760.993Hippocampus_comes
ENSG00000055950MRPL439569.048ENSIPUG00000015563mrpl439962.329Ictalurus_punctatus
ENSG00000055950MRPL4310092.453ENSSTOG00000009016MRPL4310092.453Ictidomys_tridecemlineatus
ENSG00000055950MRPL439588.742ENSJJAG00000023922Mrpl439788.742Jaculus_jaculus
ENSG00000055950MRPL439569.048ENSKMAG00000006900mrpl439659.184Kryptolebias_marmoratus
ENSG00000055950MRPL439559.524ENSLBEG00000028159mrpl4310054.305Labrus_bergylta
ENSG00000055950MRPL439869.767ENSLOCG00000012629mrpl439963.758Lepisosteus_oculatus
ENSG00000055950MRPL439888.372ENSLAFG00000028961MRPL4310086.452Loxodonta_africana
ENSG00000055950MRPL4398100.000ENSMFAG00000036954-10097.561Macaca_fascicularis
ENSG00000055950MRPL4310077.987ENSMFAG00000001890-9588.889Macaca_fascicularis
ENSG00000055950MRPL4310077.987ENSMMUG00000045161-9588.889Macaca_mulatta
ENSG00000055950MRPL4398100.000ENSMMUG00000010679-10097.561Macaca_mulatta
ENSG00000055950MRPL4398100.000ENSMNEG00000038269MRPL4310097.561Macaca_nemestrina
ENSG00000055950MRPL4398100.000ENSMLEG00000031351MRPL4310097.561Mandrillus_leucophaeus
ENSG00000055950MRPL439564.286ENSMAMG00000004808mrpl439164.234Mastacembelus_armatus
ENSG00000055950MRPL439865.116ENSMZEG00005006080mrpl439960.667Maylandia_zebra
ENSG00000055950MRPL439886.047ENSMAUG00000015594Mrpl439983.871Mesocricetus_auratus
ENSG00000055950MRPL439890.698ENSMICG00000043132-10084.242Microcebus_murinus
ENSG00000055950MRPL439890.698ENSMICG00000000014-10088.415Microcebus_murinus
ENSG00000055950MRPL439888.372ENSMOCG00000008602Mrpl4310084.277Microtus_ochrogaster
ENSG00000055950MRPL439559.524ENSMMOG00000020907mrpl439757.823Mola_mola
ENSG00000055950MRPL439881.395ENSMODG00000011975-8670.968Monodelphis_domestica
ENSG00000055950MRPL439865.116ENSMALG00000007886mrpl439962.585Monopterus_albus
ENSG00000055950MRPL439886.047MGP_CAROLIEiJ_G0023007Mrpl4310082.390Mus_caroli
ENSG00000055950MRPL4310082.390ENSMUSG00000025208Mrpl4310082.390Mus_musculus
ENSG00000055950MRPL4310082.390MGP_PahariEiJ_G0014497Mrpl4310082.390Mus_pahari
ENSG00000055950MRPL4310082.390MGP_SPRETEiJ_G0023928Mrpl4310082.390Mus_spretus
ENSG00000055950MRPL439895.349ENSMPUG00000016942MRPL4310082.890Mustela_putorius_furo
ENSG00000055950MRPL439890.698ENSMLUG00000013678MRPL4310083.142Myotis_lucifugus
ENSG00000055950MRPL4310084.906ENSNGAG00000023476Mrpl4310084.906Nannospalax_galili
ENSG00000055950MRPL439865.116ENSNBRG00000005614mrpl439861.224Neolamprologus_brichardi
ENSG00000055950MRPL439988.608ENSNLEG00000030260-9890.909Nomascus_leucogenys
ENSG00000055950MRPL4310099.390ENSNLEG00000014812-10099.390Nomascus_leucogenys
ENSG00000055950MRPL4310095.597ENSNLEG00000019250-10095.597Nomascus_leucogenys
ENSG00000055950MRPL439886.047ENSMEUG00000014589MRPL438763.514Notamacropus_eugenii
ENSG00000055950MRPL4310085.535ENSOPRG00000007093MRPL436286.875Ochotona_princeps
ENSG00000055950MRPL439893.023ENSODEG00000006668-9782.967Octodon_degus
ENSG00000055950MRPL439893.023ENSODEG00000000523-10081.461Octodon_degus
ENSG00000055950MRPL439879.070ENSOANG00000007327-10073.256Ornithorhynchus_anatinus
ENSG00000055950MRPL439886.047ENSOCUG00000002742-6888.983Oryctolagus_cuniculus
ENSG00000055950MRPL439564.286ENSORLG00000011530mrpl439162.044Oryzias_latipes
ENSG00000055950MRPL439862.791ENSORLG00020001740mrpl439760.140Oryzias_latipes_hni
ENSG00000055950MRPL439564.286ENSORLG00015000014mrpl439162.044Oryzias_latipes_hsok
ENSG00000055950MRPL439566.667ENSOMEG00000005471mrpl439660.000Oryzias_melastigma
ENSG00000055950MRPL439890.698ENSOGAG00000030715MRPL4310082.759Otolemur_garnettii
ENSG00000055950MRPL4310083.019ENSOARG00000016032MRPL4310075.758Ovis_aries
ENSG00000055950MRPL4310099.149ENSPPAG00000042828MRPL4310099.149Pan_paniscus
ENSG00000055950MRPL4310091.463ENSPPRG00000024398MRPL439991.463Panthera_pardus
ENSG00000055950MRPL439981.013ENSPTIG00000019483MRPL4310077.647Panthera_tigris_altaica
ENSG00000055950MRPL43100100.000ENSPTRG00000002858MRPL43100100.000Pan_troglodytes
ENSG00000055950MRPL4398100.000ENSPANG00000021122MRPL4310097.561Papio_anubis
ENSG00000055950MRPL439865.116ENSPKIG00000012675mrpl439962.416Paramormyrops_kingsleyae
ENSG00000055950MRPL437360.185ENSPSIG00000011117MRPL438959.459Pelodiscus_sinensis
ENSG00000055950MRPL439564.286ENSPMGG00000014529mrpl439760.544Periophthalmus_magnuspinnatus
ENSG00000055950MRPL439888.372ENSPEMG00000001510Mrpl4310083.648Peromyscus_maniculatus_bairdii
ENSG00000055950MRPL439363.415ENSPMAG00000003349mrpl439955.696Petromyzon_marinus
ENSG00000055950MRPL439561.905ENSPFOG00000016638mrpl439756.164Poecilia_formosa
ENSG00000055950MRPL439251.370ENSPLAG00000004474mrpl439751.020Poecilia_latipinna
ENSG00000055950MRPL439561.905ENSPMEG00000003984mrpl439756.164Poecilia_mexicana
ENSG00000055950MRPL439561.905ENSPREG00000010980mrpl439755.034Poecilia_reticulata
ENSG00000055950MRPL4310095.074ENSPPYG00000002575-10095.074Pongo_abelii
ENSG00000055950MRPL439687.582ENSPCAG00000012538MRPL4310076.806Procavia_capensis
ENSG00000055950MRPL4310089.634ENSPCOG00000027271MRPL4310089.634Propithecus_coquereli
ENSG00000055950MRPL4310089.937ENSPVAG00000002153MRPL4310085.824Pteropus_vampyrus
ENSG00000055950MRPL439865.116ENSPNYG00000003000mrpl439959.333Pundamilia_nyererei
ENSG00000055950MRPL439569.048ENSPNAG00000004972mrpl439961.905Pygocentrus_nattereri
ENSG00000055950MRPL439886.047ENSRNOG00000014890Mrpl439986.364Rattus_norvegicus
ENSG00000055950MRPL4310097.561ENSRBIG00000029374MRPL4310097.561Rhinopithecus_bieti
ENSG00000055950MRPL4310097.561ENSRROG00000036241MRPL4310097.561Rhinopithecus_roxellana
ENSG00000055950MRPL439897.674ENSSBOG00000022294MRPL4310095.181Saimiri_boliviensis_boliviensis
ENSG00000055950MRPL439888.372ENSSHAG00000013782MRPL4310065.421Sarcophilus_harrisii
ENSG00000055950MRPL439862.791ENSSFOG00015003599mrpl439964.430Scleropages_formosus
ENSG00000055950MRPL439564.286ENSSMAG00000007436mrpl4310060.927Scophthalmus_maximus
ENSG00000055950MRPL439566.667ENSSDUG00000012344mrpl439761.224Seriola_dumerili
ENSG00000055950MRPL439566.667ENSSLDG00000006932mrpl439760.544Seriola_lalandi_dorsalis
ENSG00000055950MRPL439876.744ENSSPUG00000011319MRPL439069.286Sphenodon_punctatus
ENSG00000055950MRPL439566.667ENSSPAG00000005558mrpl439762.585Stegastes_partitus
ENSG00000055950MRPL4310092.453ENSSSCG00000010560MRPL4310092.453Sus_scrofa
ENSG00000055950MRPL437958.594ENSTGUG00000010071MRPL439758.594Taeniopygia_guttata
ENSG00000055950MRPL439559.524ENSTRUG00000021665mrpl439758.108Takifugu_rubripes
ENSG00000055950MRPL439862.791ENSTNIG00000014427mrpl439559.310Tetraodon_nigroviridis
ENSG00000055950MRPL439791.558ENSTTRG00000015111MRPL4310086.590Tursiops_truncatus
ENSG00000055950MRPL439893.023ENSUAMG00000018200MRPL439991.083Ursus_americanus
ENSG00000055950MRPL439893.023ENSUMAG00000022958MRPL439990.000Ursus_maritimus
ENSG00000055950MRPL439790.968ENSVVUG00000000360MRPL439087.151Vulpes_vulpes
ENSG00000055950MRPL439869.767ENSXETG00000015206mrpl438969.784Xenopus_tropicalis
ENSG00000055950MRPL439561.905ENSXMAG00000017648mrpl439754.795Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.HDAFunction
GO:0003735structural constituent of ribosome21873635.IBAFunction
GO:0003735structural constituent of ribosome11543634.NASFunction
GO:0005515protein binding25416956.IPIFunction
GO:0005739mitochondrion28892042.IDAComponent
GO:0005743mitochondrial inner membrane-TASComponent
GO:0005761mitochondrial ribosome11543634.NASComponent
GO:0005762mitochondrial large ribosomal subunit21873635.IBAComponent
GO:0005762mitochondrial large ribosomal subunit25278503.28892042.IDAComponent
GO:0006412translation11543634.NASProcess
GO:0070125mitochondrial translational elongation-TASProcess
GO:0070126mitochondrial translational termination-TASProcess

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