EuRBPDB

Description

Ensembl ID: ENSG00000060688 (Gene tree)
Gene ID: 9410
Gene Symbol: SNRNP40
Alias: PRP8BP|SPF38|PRPF8BP|HPRP8BP|WDR57
Full Name: small nuclear ribonucleoprotein U5 subunit 40
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 37,230 bases
Position: chr1:31,259,568-31,296,797
Accession: 30857
RBP type: non-canonical RBP
Summary: This gene encodes a component of the U5 small nuclear ribonucleoprotein (snRNP) particle. The U5 snRNP is part of the spliceosome, a multiprotein complex that catalyzes the removal of introns from pre-messenger RNAs. [provided by RefSeq, Jul 2008]

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
22658674	Insights into RNA biology from an atlas of mammalian mRNA-binding proteins	RIC & Hela	2012 May 31	Castello A	DOI: 10.1016/j.cell.2012.04.031
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000489853	SNRNP40-206	1928	-	-	- (aa)	-	-
ENST00000373720	SNRNP40-202	1087	-	ENSP00000362825	127 (aa)	-	Q9NSS8
ENST00000463988	SNRNP40-203	677	-	-	- (aa)	-	-
ENST00000486941	SNRNP40-205	743	-	-	- (aa)	-	-
ENST00000474025	SNRNP40-204	581	-	-	- (aa)	-	-
ENST00000263694	SNRNP40-201	1597	-	ENSP00000263694	357 (aa)	-	Q96DI7
ENST00000491106	SNRNP40-207	459	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
hsa03040	Spliceosome	KEGG

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000060688	Platelet Function Tests	2.6899700E-005	-
ENSG00000060688	Platelet Function Tests	2.6899700E-005	-

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000375	RNA splicing, via transesterification reactions	9774689.	TAS	Process
GO:0000398	mRNA splicing, via spliceosome	11991638.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	-	TAS	Process
GO:0003723	RNA binding	22658674.	HDA	Function
GO:0005515	protein binding	9774689.	IPI	Function
GO:0005654	nucleoplasm	-	TAS	Component
GO:0005682	U5 snRNP	9774689.	TAS	Component
GO:0005732	small nucleolar ribonucleoprotein complex	9774689.	NAS	Component
GO:0005829	cytosol	-	IDA	Component
GO:0006396	RNA processing	9774689.	TAS	Process
GO:0008380	RNA splicing	9774689.	TAS	Process
GO:0016607	nuclear speck	-	IDA	Component
GO:0071007	U2-type catalytic step 2 spliceosome	28076346.	IDA	Component
GO:0071013	catalytic step 2 spliceosome	11991638.	IDA	Component