EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000064419 (Gene tree)
Gene ID
23534
Gene Symbol
TNPO3
Alias
TRN-SR|MTR10A|TRN-SR2|IPO12|LGMD1F
Full Name
transportin 3
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
100,994 bases
Position
chr7:128,954,180-129,055,173
Accession
17103
RBP type
canonical RBP
Summary
The protein encoded by this gene is a nuclear import receptor for serine/arginine-rich (SR) proteins such as the splicing factors SFRS1 and SFRS2. The encoded protein has also been shown to be involved in HIV-1 infection, apparently through interaction with the HIV-1 capsid protein. Two transcript variants encoding different isoforms as well as a noncoding transcript have been found for this gene.[provided by RefSeq, Jul 2010]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000420089Xpo1PF08389.125.2e-2811
ENSP00000265388Xpo1PF08389.125.8e-2811
ENSP00000418646Xpo1PF08389.126e-2811
ENSP00000418267Xpo1PF08389.126.5e-2811
ENSP00000487231Xpo1PF08389.126.5e-2811
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
12628928A novel splicing regulator shares a nuclear import pathway with SR proteins.EMBO J2003 Mar 17Lai MC-
21976643The cargo-binding domain of transportin 3 is required for lentivirus nuclear import.J Virol2011 DecLogue ECdoi: 10.1128/JVI.05384-11
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000482320TNPO3-2043585-ENSP00000420089857 (aa)-E9PFH4
ENST00000471234TNPO3-2033283-ENSP00000418646859 (aa)-Q9Y5L0
ENST00000471166TNPO3-2023019-ENSP00000418267957 (aa)-C9J7E5
ENST00000627585TNPO3-2054514-ENSP00000487231957 (aa)-C9J7E5
ENST00000265388TNPO3-2014153-ENSP00000265388923 (aa)-Q9Y5L0
Gene Model
Click here to download ENSG00000064419's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000064419Lupus Erythematosus, Systemic1.6521E-1118204098
ENSG00000064419Lupus Erythematosus, Systemic2.2854E-1118204098
ENSG00000064419Lupus Erythematosus, Systemic2.48E-618204446
ENSG00000064419Lupus Erythematosus, Systemic2E-1324871463
ENSG00000064419Liver Cirrhosis, Biliary9E-1721399635
ENSG00000064419Lupus Erythematosus, Systemic6E-921408207
ENSG00000064419Lupus Erythematosus, Systemic6E-3126606652
ENSG00000064419Lupus Erythematosus, Systemic6E-1323053960
ENSG00000064419Lupus Erythematosus, Systemic9E-11026502338
ENSG00000064419Lupus Erythematosus, Systemic7E-1821408207
ENSG00000064419Scleroderma, Systemic8E-721779181
ENSG00000064419Scleroderma, Systemic2E-721779181
ENSG00000064419Scleroderma, Systemic1E-921779181
ENSG00000064419Scleroderma, Systemic2E-1021779181
ENSG00000064419Liver Cirrhosis, Biliary2E-719458352
ENSG00000064419Scleroderma, Systemic2E-1320383147
ENSG00000064419Liver Cirrhosis, Biliary3E-1020639880
ENSG00000064419Liver Cirrhosis, Biliary5E-2326394269
ENSG00000064419Arthritis, Rheumatoid4E-1120453842
ENSG00000064419Scleroderma, Systemic4E-721750679
ENSG00000064419Lupus Erythematosus, Systemic2E-1118204098
ENSG00000064419Lupus Erythematosus, Systemic1E-2923740937
ENSG00000064419Scleroderma, Systemic1E-2923740937
ENSG00000064419Arthritis, Rheumatoid1E-2327193031
ENSG00000064419Lupus Erythematosus, Systemic1E-2327193031
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000064419rs125397417128956751TSystemic lupus erythematosus26606652[1.88-2.37]2.11EFO_0002690
ENSG00000064419rs125317117128977412?Systemic lupus erythematosus or rheumatoid arthritis27193031[NR]1.45EFO_0000685|EFO_0002690
ENSG00000064419rs125317117128977412ASystemic lupus erythematosus23053960[1.403-1.808]1.593EFO_0002690
ENSG00000064419rs624786157129044262?Systemic sclerosis243879891.53EFO_0000717
ENSG00000064419rs125317117128977412?Systemic sclerosis29293537EFO_0000717
ENSG00000064419rs125344217128984019?Systemic sclerosis29293537EFO_0000717
ENSG00000064419rs125344217128984019?Diffuse cutaneous systemic sclerosis29293537EFO_0000404
ENSG00000064419rs351882617129043485APrimary biliary cirrhosis22961000[1.39-1.63]1.52EFO_1001486
ENSG00000064419rs125317117128977412GPrimary biliary cholangitis21399635[1.41-1.76]1.58EFO_0004267
ENSG00000064419rs125317117128977412GSystemic lupus erythematosus21408207[1.36-1.83]1.58EFO_0002690
ENSG00000064419rs69610147129052656?Age at menopause30595370EFO_0004704
ENSG00000064419rs127068617128976528TSystemic lupus erythematosus28714469[1.65-1.87]1.76EFO_0002690
ENSG00000064419rs132383527129007888TSystemic seropositive rheumatic diseases (Systemic sclerosis or systemic lupus erythematosus or rheumatoid arthritis or idiopathic inflammatory myopathies)30573655[1.30-1.60]1.44EFO_0000717|EFO_0000685|EFO_0000783|EFO_0002690
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000064419's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000064419TNPO310086.581ENSAPOG00000018347tnpo310086.566Acanthochromis_polyacanthus
ENSG00000064419TNPO39998.950ENSAMEG00000005135TNPO39898.950Ailuropoda_melanoleuca
ENSG00000064419TNPO310084.247ENSACIG00000005897tnpo39984.145Amphilophus_citrinellus
ENSG00000064419TNPO310086.698ENSAOCG00000008264tnpo310086.674Amphiprion_ocellaris
ENSG00000064419TNPO310086.698ENSAPEG00000024300tnpo310086.636Amphiprion_percula
ENSG00000064419TNPO310085.648ENSATEG00000003197tnpo310085.590Anabas_testudineus
ENSG00000064419TNPO37394.340ENSAPLG00000005946TNPO39194.340Anas_platyrhynchos
ENSG00000064419TNPO38392.525ENSACAG00000013470TNPO39592.641Anolis_carolinensis
ENSG00000064419TNPO310099.783ENSANAG00000037940TNPO310099.783Aotus_nancymaae
ENSG00000064419TNPO310085.998ENSACLG00000005561tnpo310085.915Astatotilapia_calliptera
ENSG00000064419TNPO310086.241ENSAMXG00000016236tnpo310086.241Astyanax_mexicanus
ENSG00000064419TNPO310099.133ENSBTAG00000004992TNPO310099.133Bos_taurus
ENSG00000064419TNPO38431.754WBGene00006647tsr-18230.675Caenorhabditis_elegans
ENSG00000064419TNPO310099.783ENSCJAG00000018085TNPO310099.783Callithrix_jacchus
ENSG00000064419TNPO310099.892ENSCAFG00000001543TNPO310099.892Canis_familiaris
ENSG00000064419TNPO310099.892ENSCAFG00020022462TNPO39999.459Canis_lupus_dingo
ENSG00000064419TNPO310099.183ENSCHIG00000011721TNPO310099.133Capra_hircus
ENSG00000064419TNPO310099.892ENSTSYG00000002989TNPO310099.892Carlito_syrichta
ENSG00000064419TNPO37697.849ENSCAPG00000005843TNPO39197.849Cavia_aperea
ENSG00000064419TNPO310099.242ENSCPOG00000039784TNPO310099.242Cavia_porcellus
ENSG00000064419TNPO310099.892ENSCCAG00000033826TNPO310099.892Cebus_capucinus
ENSG00000064419TNPO3100100.000ENSCATG00000030018TNPO3100100.000Cercocebus_atys
ENSG00000064419TNPO310098.706ENSCLAG00000016298TNPO310098.706Chinchilla_lanigera
ENSG00000064419TNPO310099.892ENSCSAG00000009966TNPO310099.892Chlorocebus_sabaeus
ENSG00000064419TNPO39973.214ENSCHOG00000011547TNPO39973.214Choloepus_hoffmanni
ENSG00000064419TNPO310094.749ENSCPBG00000017497TNPO310094.749Chrysemys_picta_bellii
ENSG00000064419TNPO39948.911ENSCING00000005042-9948.911Ciona_intestinalis
ENSG00000064419TNPO39947.219ENSCSAVG00000008623-9454.182Ciona_savignyi
ENSG00000064419TNPO3100100.000ENSCANG00000033070TNPO3100100.000Colobus_angolensis_palliatus
ENSG00000064419TNPO310099.458ENSCGRG00001015925Tnpo310099.458Cricetulus_griseus_chok1gshd
ENSG00000064419TNPO310099.458ENSCGRG00000010379Tnpo310099.458Cricetulus_griseus_crigri
ENSG00000064419TNPO310084.947ENSCSEG00000005952tnpo310084.940Cynoglossus_semilaevis
ENSG00000064419TNPO310085.764ENSCVAG00000020285tnpo310085.699Cyprinodon_variegatus
ENSG00000064419TNPO310086.083ENSDARG00000045680tnpo310085.807Danio_rerio
ENSG00000064419TNPO310099.783ENSDNOG00000002556TNPO310099.783Dasypus_novemcinctus
ENSG00000064419TNPO36297.409ENSDORG00000002433Tnpo39597.409Dipodomys_ordii
ENSG00000064419TNPO310042.578FBgn0031456Tnpo-SR9942.519Drosophila_melanogaster
ENSG00000064419TNPO39599.560ENSETEG00000002101TNPO39099.782Echinops_telfairi
ENSG00000064419TNPO310074.722ENSEBUG00000016931tnpo310071.289Eptatretus_burgeri
ENSG00000064419TNPO310099.675ENSEASG00005008677TNPO310099.675Equus_asinus_asinus
ENSG00000064419TNPO310099.675ENSECAG00000012815TNPO310099.675Equus_caballus
ENSG00000064419TNPO39999.718ENSEEUG00000005178TNPO39299.718Erinaceus_europaeus
ENSG00000064419TNPO36132.701ENSEEUG00000011681IPO137330.493Erinaceus_europaeus
ENSG00000064419TNPO310087.165ENSELUG00000012153tnpo39986.942Esox_lucius
ENSG00000064419TNPO3100100.000ENSFCAG00000018186TNPO3100100.000Felis_catus
ENSG00000064419TNPO310089.437ENSFALG00000010667TNPO310089.632Ficedula_albicollis
ENSG00000064419TNPO310099.135ENSFDAG00000019578TNPO310099.135Fukomys_damarensis
ENSG00000064419TNPO310085.764ENSFHEG00000012859tnpo310085.699Fundulus_heteroclitus
ENSG00000064419TNPO310085.590ENSGMOG00000007324tnpo310085.590Gadus_morhua
ENSG00000064419TNPO36194.306ENSGALG00000039420TNPO39894.306Gallus_gallus
ENSG00000064419TNPO310085.807ENSGACG00000000699tnpo310085.807Gasterosteus_aculeatus
ENSG00000064419TNPO310094.632ENSGAGG00000006777TNPO310094.632Gopherus_agassizii
ENSG00000064419TNPO3100100.000ENSGGOG00000008339TNPO3100100.000Gorilla_gorilla
ENSG00000064419TNPO310085.998ENSHBUG00000008351tnpo310085.915Haplochromis_burtoni
ENSG00000064419TNPO310099.675ENSHGLG00000004463TNPO310099.675Heterocephalus_glaber_female
ENSG00000064419TNPO310099.675ENSHGLG00100005509TNPO310099.675Heterocephalus_glaber_male
ENSG00000064419TNPO310085.414ENSHCOG00000007221tnpo310085.265Hippocampus_comes
ENSG00000064419TNPO310085.833ENSIPUG00000014979TNPO39985.157Ictalurus_punctatus
ENSG00000064419TNPO310099.783ENSSTOG00000004885TNPO310099.783Ictidomys_tridecemlineatus
ENSG00000064419TNPO39994.651ENSJJAG00000013530Tnpo310092.341Jaculus_jaculus
ENSG00000064419TNPO310085.915ENSKMAG00000010497tnpo310085.915Kryptolebias_marmoratus
ENSG00000064419TNPO310081.680ENSLBEG00000011988-9981.767Labrus_bergylta
ENSG00000064419TNPO39786.675ENSLBEG00000016595tnpo310084.371Labrus_bergylta
ENSG00000064419TNPO38490.270ENSLACG00000002351TNPO39990.270Latimeria_chalumnae
ENSG00000064419TNPO310087.757ENSLOCG00000015556tnpo310087.757Lepisosteus_oculatus
ENSG00000064419TNPO310099.137ENSLAFG00000002738TNPO310099.137Loxodonta_africana
ENSG00000064419TNPO3100100.000ENSMFAG00000032385TNPO3100100.000Macaca_fascicularis
ENSG00000064419TNPO3100100.000ENSMMUG00000004311TNPO3100100.000Macaca_mulatta
ENSG00000064419TNPO3100100.000ENSMNEG00000045277TNPO3100100.000Macaca_nemestrina
ENSG00000064419TNPO3100100.000ENSMLEG00000037881TNPO3100100.000Mandrillus_leucophaeus
ENSG00000064419TNPO310086.348ENSMAMG00000021096tnpo310086.241Mastacembelus_armatus
ENSG00000064419TNPO310085.998ENSMZEG00005015084tnpo310085.915Maylandia_zebra
ENSG00000064419TNPO38189.209ENSMGAG00000002839TNPO39989.241Meleagris_gallopavo
ENSG00000064419TNPO310099.350ENSMAUG00000013463Tnpo310099.350Mesocricetus_auratus
ENSG00000064419TNPO3100100.000ENSMICG00000000140TNPO3100100.000Microcebus_murinus
ENSG00000064419TNPO36935.659ENSMICG00000011003IPO137733.136Microcebus_murinus
ENSG00000064419TNPO310099.458ENSMOCG00000013264Tnpo310099.458Microtus_ochrogaster
ENSG00000064419TNPO310085.414ENSMMOG00000005887tnpo310085.374Mola_mola
ENSG00000064419TNPO310097.666ENSMODG00000014700TNPO310097.616Monodelphis_domestica
ENSG00000064419TNPO310086.083ENSMALG00000006675tnpo310085.699Monopterus_albus
ENSG00000064419TNPO310099.350MGP_CAROLIEiJ_G0028176Tnpo310099.350Mus_caroli
ENSG00000064419TNPO310099.350ENSMUSG00000012535Tnpo310099.350Mus_musculus
ENSG00000064419TNPO310099.242MGP_PahariEiJ_G0021934Tnpo310099.242Mus_pahari
ENSG00000064419TNPO310099.242MGP_SPRETEiJ_G0029176Tnpo310099.242Mus_spretus
ENSG00000064419TNPO310099.892ENSMPUG00000006021TNPO310099.892Mustela_putorius_furo
ENSG00000064419TNPO310089.274ENSMLUG00000000947TNPO39798.555Myotis_lucifugus
ENSG00000064419TNPO310099.783ENSNGAG00000008722Tnpo310099.783Nannospalax_galili
ENSG00000064419TNPO310085.089ENSNBRG00000019001tnpo310085.569Neolamprologus_brichardi
ENSG00000064419TNPO310099.884ENSNLEG00000012491TNPO310099.884Nomascus_leucogenys
ENSG00000064419TNPO38995.172ENSMEUG00000002445TNPO38395.172Notamacropus_eugenii
ENSG00000064419TNPO39199.457ENSOPRG00000006163TNPO39099.457Ochotona_princeps
ENSG00000064419TNPO39899.224ENSODEG00000012826TNPO310099.224Octodon_degus
ENSG00000064419TNPO310086.231ENSONIG00000007604tnpo310086.132Oreochromis_niloticus
ENSG00000064419TNPO39992.961ENSOANG00000011451TNPO310094.463Ornithorhynchus_anatinus
ENSG00000064419TNPO39997.796ENSOCUG00000010105TNPO39997.796Oryctolagus_cuniculus
ENSG00000064419TNPO310085.000ENSORLG00000029369tnpo310084.832Oryzias_latipes
ENSG00000064419TNPO310085.000ENSORLG00020003464tnpo310084.832Oryzias_latipes_hni
ENSG00000064419TNPO310085.278ENSORLG00015002610tnpo310084.940Oryzias_latipes_hsok
ENSG00000064419TNPO310085.278ENSOMEG00000021006tnpo310085.049Oryzias_melastigma
ENSG00000064419TNPO310099.675ENSOGAG00000015340TNPO310099.675Otolemur_garnettii
ENSG00000064419TNPO310098.950ENSOARG00000004026TNPO310098.917Ovis_aries
ENSG00000064419TNPO3100100.000ENSPPAG00000034975TNPO3100100.000Pan_paniscus
ENSG00000064419TNPO3100100.000ENSPPRG00000002050TNPO3100100.000Panthera_pardus
ENSG00000064419TNPO3100100.000ENSPTIG00000016167TNPO3100100.000Panthera_tigris_altaica
ENSG00000064419TNPO3100100.000ENSPTRG00000019676TNPO3100100.000Pan_troglodytes
ENSG00000064419TNPO3100100.000ENSPANG00000022226TNPO3100100.000Papio_anubis
ENSG00000064419TNPO310083.889ENSPKIG00000023234tnpo310083.749Paramormyrops_kingsleyae
ENSG00000064419TNPO310080.670ENSPKIG00000008628-10080.670Paramormyrops_kingsleyae
ENSG00000064419TNPO36279.577ENSPMGG00000009763tnpo39979.577Periophthalmus_magnuspinnatus
ENSG00000064419TNPO310099.350ENSPEMG00000000422Tnpo310099.350Peromyscus_maniculatus_bairdii
ENSG00000064419TNPO310072.410ENSPMAG00000008621tnpo310072.933Petromyzon_marinus
ENSG00000064419TNPO310097.083ENSPCIG00000011366TNPO310097.075Phascolarctos_cinereus
ENSG00000064419TNPO310085.885ENSPFOG00000013592tnpo39985.590Poecilia_formosa
ENSG00000064419TNPO310085.885ENSPLAG00000010188tnpo310085.590Poecilia_latipinna
ENSG00000064419TNPO310085.885ENSPMEG00000022731tnpo310085.699Poecilia_mexicana
ENSG00000064419TNPO3100100.000ENSPPYG00000017990TNPO3100100.000Pongo_abelii
ENSG00000064419TNPO39992.113ENSPCAG00000010158TNPO39890.871Procavia_capensis
ENSG00000064419TNPO389100.000ENSPCOG00000023901TNPO397100.000Propithecus_coquereli
ENSG00000064419TNPO39699.691ENSPVAG00000015757TNPO39895.378Pteropus_vampyrus
ENSG00000064419TNPO310085.998ENSPNYG00000002349tnpo310085.915Pundamilia_nyererei
ENSG00000064419TNPO310087.048ENSPNAG00000001142tnpo310086.999Pygocentrus_nattereri
ENSG00000064419TNPO310099.242ENSRNOG00000021758Tnpo310099.242Rattus_norvegicus
ENSG00000064419TNPO310099.892ENSRBIG00000042549TNPO310099.892Rhinopithecus_bieti
ENSG00000064419TNPO310099.892ENSRROG00000039264TNPO310099.892Rhinopithecus_roxellana
ENSG00000064419TNPO310083.386ENSSBOG00000029642TNPO310083.386Saimiri_boliviensis_boliviensis
ENSG00000064419TNPO310097.783ENSSHAG00000006837TNPO310097.848Sarcophilus_harrisii
ENSG00000064419TNPO310085.000ENSSFOG00015001474tnpo310084.832Scleropages_formosus
ENSG00000064419TNPO310083.101ENSSFOG00015004256tnpo310080.983Scleropages_formosus
ENSG00000064419TNPO310086.241ENSSMAG00000010422tnpo39786.241Scophthalmus_maximus
ENSG00000064419TNPO310086.698ENSSDUG00000004850tnpo310086.674Seriola_dumerili
ENSG00000064419TNPO310086.698ENSSLDG00000016927tnpo310086.674Seriola_lalandi_dorsalis
ENSG00000064419TNPO39985.844ENSSARG00000013893TNPO39887.514Sorex_araneus
ENSG00000064419TNPO310087.123ENSSPUG00000007457TNPO39987.581Sphenodon_punctatus
ENSG00000064419TNPO37987.603ENSSPAG00000014209tnpo39987.603Stegastes_partitus
ENSG00000064419TNPO310099.883ENSSSCG00000016572TNPO310099.883Sus_scrofa
ENSG00000064419TNPO310084.125ENSTNIG00000003347tnpo310084.125Tetraodon_nigroviridis
ENSG00000064419TNPO394100.000ENSTBEG00000007220TNPO390100.000Tupaia_belangeri
ENSG00000064419TNPO39987.080ENSTTRG00000014618TNPO39887.080Tursiops_truncatus
ENSG00000064419TNPO310099.892ENSUAMG00000021281TNPO310099.892Ursus_americanus
ENSG00000064419TNPO310099.892ENSUMAG00000006882TNPO310099.892Ursus_maritimus
ENSG00000064419TNPO38588.869ENSVPAG00000006166TNPO38888.869Vicugna_pacos
ENSG00000064419TNPO310099.892ENSVVUG00000011004TNPO310099.865Vulpes_vulpes
ENSG00000064419TNPO310082.937ENSXETG00000015009tnpo310082.937Xenopus_tropicalis
ENSG00000064419TNPO310085.374ENSXMAG00000013062tnpo310085.374Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0005515protein binding12628928.15829567.22872640.IPIFunction
GO:0005634nucleus-IEAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0006606protein import into nucleus21873635.IBAProcess
GO:0006606protein import into nucleus12628928.IDAProcess
GO:0008565protein transporter activity21873635.IBAFunction
GO:0038023signaling receptor activity10366588.TASFunction
GO:0042802identical protein binding22872640.IPIFunction
GO:0043231intracellular membrane-bounded organelle-IDAComponent

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