EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000064703 (Gene tree)
Gene ID
11218
Gene Symbol
DDX20
Alias
DP103|GEMIN3
Full Name
DEAD-box helicase 20
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
12,772 bases
Position
chr1:111,755,245-111,768,016
Accession
2743
RBP type
canonical RBP
Summary
DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. This gene encodes a DEAD box protein, which has an ATPase activity and is a component of the survival of motor neurons (SMN) complex. This protein interacts directly with SMN, the spinal muscular atrophy gene product, and may play a catalytic role in the function of the SMN complex on RNPs. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000358716ResIIIPF04851.150.0001611
ENSP00000358716DEADPF00270.291.9e-3111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
16935882DExD/H box RNA helicases: multifunctional proteins with important roles in transcriptional regulation.Nucleic Acids Res2006Fuller-Pace FV-
11689659Functional cooperation of Epstein-Barr virus nuclear antigen 2 and the survival motor neuron protein in transactivation of the viral LMP1 promoter.J Virol2001 DecVoss MD-
10767334Direct interaction of Smn with dp103, a putative RNA helicase: a role for Smn in transcription regulation?Hum Mol Genet2000 Apr 12Campbell L-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000475700DDX20-2024332-ENSP00000435660432 (aa)-E9PJ60
ENST00000533164DDX20-2041499-ENSP00000434085138 (aa)-Q9UHI6
ENST00000369702DDX20-2014212-ENSP00000358716824 (aa)-Q9UHI6
ENST00000534200DDX20-205562--- (aa)--
ENST00000524894DDX20-203337--- (aa)--
Gene Model
Click here to download ENSG00000064703's gene model file
Pathways
Pathway IDPathway NameSource
hsa03013RNA transportKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000064703Coronary Artery Disease2.2200000E-005-
ENSG00000064703Coronary Artery Disease2.2200000E-005-
ENSG00000064703monocyte chemoattractant protein 1 (66-77)1.0420000E-005-
ENSG00000064703monocyte chemoattractant protein 1 (66-77)1.0420000E-005-
ENSG00000064703Tunica Media5.3834708E-005-
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000064703rs1974121111766331TBody mass index30108127[NR] unit decrease0.015EFO_0004340
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000064703's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000064703DDX205144.286ENSG00000161960EIF4A19944.361
ENSG00000064703DDX205143.662ENSG00000156976EIF4A28447.826
ENSG00000064703DDX205234.722ENSG00000136271DDX569631.111
ENSG00000064703DDX206136.905ENSG00000110367DDX68033.838
ENSG00000064703DDX205139.437ENSG00000198563DDX39B8736.053
ENSG00000064703DDX205142.857ENSG00000141543EIF4A39235.401
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000064703DDX209888.409ENSAMEG00000005344DDX209988.228Ailuropoda_melanoleuca
ENSG00000064703DDX209550.547ENSACIG00000013095ddx207161.760Amphilophus_citrinellus
ENSG00000064703DDX209550.607ENSAOCG00000013474DDX209850.969Amphiprion_ocellaris
ENSG00000064703DDX209550.182ENSAPEG00000006690ddx209850.847Amphiprion_percula
ENSG00000064703DDX209050.067ENSAPLG00000013826DDX209949.666Anas_platyrhynchos
ENSG00000064703DDX209457.955ENSACAG00000006235DDX209857.503Anolis_carolinensis
ENSG00000064703DDX209893.958ENSANAG00000037881DDX2010093.811Aotus_nancymaae
ENSG00000064703DDX209550.243ENSACLG00000009485ddx207162.267Astatotilapia_calliptera
ENSG00000064703DDX206079.518ENSAMXG00000040738ddx207760.840Astyanax_mexicanus
ENSG00000064703DDX209988.113ENSBTAG00000018717DDX2010088.015Bos_taurus
ENSG00000064703DDX209892.972ENSCJAG00000013428DDX209691.019Callithrix_jacchus
ENSG00000064703DDX209886.849ENSCAFG00000013674DDX2010086.826Canis_familiaris
ENSG00000064703DDX209787.437ENSCAFG00020008055DDX209395.484Canis_lupus_dingo
ENSG00000064703DDX209889.422ENSCHIG00000011219DDX2010089.225Capra_hircus
ENSG00000064703DDX209887.438ENSTSYG00000000153DDX209986.877Carlito_syrichta
ENSG00000064703DDX209868.957ENSCAPG00000017427DDX2010079.046Cavia_aperea
ENSG00000064703DDX2010083.374ENSCPOG00000032340DDX2010083.374Cavia_porcellus
ENSG00000064703DDX2010093.568ENSCCAG00000026759DDX2010093.568Cebus_capucinus
ENSG00000064703DDX2010096.000ENSCATG00000039030DDX2010096.000Cercocebus_atys
ENSG00000064703DDX2010084.345ENSCLAG00000008874DDX2010084.345Chinchilla_lanigera
ENSG00000064703DDX2010096.606ENSCSAG00000001582DDX209996.606Chlorocebus_sabaeus
ENSG00000064703DDX206390.120ENSCHOG00000002610DDX208290.120Choloepus_hoffmanni
ENSG00000064703DDX209464.459ENSCPBG00000021256DDX209864.340Chrysemys_picta_bellii
ENSG00000064703DDX206758.696ENSCSAVG00000003045-10059.366Ciona_savignyi
ENSG00000064703DDX2010096.364ENSCANG00000041894DDX2010096.364Colobus_angolensis_palliatus
ENSG00000064703DDX209983.824ENSCGRG00001014132Ddx2010084.019Cricetulus_griseus_chok1gshd
ENSG00000064703DDX209875.708ENSCGRG00000002300Ddx2010083.472Cricetulus_griseus_crigri
ENSG00000064703DDX206657.344ENSCSEG00000018265DDX207357.344Cynoglossus_semilaevis
ENSG00000064703DDX209551.856ENSCVAG00000014821ddx209951.980Cyprinodon_variegatus
ENSG00000064703DDX206774.194ENSDARG00000061204ddx207063.014Danio_rerio
ENSG00000064703DDX209987.838ENSDNOG00000030865DDX2010087.743Dasypus_novemcinctus
ENSG00000064703DDX209887.515ENSDORG00000011660Ddx2010087.015Dipodomys_ordii
ENSG00000064703DDX206994.737ENSETEG00000002726DDX206792.708Echinops_telfairi
ENSG00000064703DDX206072.289ENSEBUG00000004479ddx209567.677Eptatretus_burgeri
ENSG00000064703DDX209889.149ENSEASG00005005454DDX2010088.956Equus_asinus_asinus
ENSG00000064703DDX209889.273ENSECAG00000013565DDX2010089.078Equus_caballus
ENSG00000064703DDX209448.206ENSELUG00000010260ddx207560.209Esox_lucius
ENSG00000064703DDX209889.273ENSFCAG00000025736DDX2010089.199Felis_catus
ENSG00000064703DDX208755.858ENSFALG00000000666DDX209956.676Ficedula_albicollis
ENSG00000064703DDX2010080.513ENSFDAG00000001140DDX2010080.513Fukomys_damarensis
ENSG00000064703DDX209551.847ENSFHEG00000019742ddx209951.541Fundulus_heteroclitus
ENSG00000064703DDX209461.118ENSGALG00000001504DDX209960.737Gallus_gallus
ENSG00000064703DDX209551.471ENSGAFG00000006427ddx209951.541Gambusia_affinis
ENSG00000064703DDX209464.504ENSGAGG00000000130DDX209964.340Gopherus_agassizii
ENSG00000064703DDX2010099.150ENSGGOG00000015576DDX2010099.150Gorilla_gorilla
ENSG00000064703DDX206874.468ENSHBUG00000007853ddx207162.437Haplochromis_burtoni
ENSG00000064703DDX2010085.316ENSHGLG00000014848DDX2010085.316Heterocephalus_glaber_female
ENSG00000064703DDX2010085.316ENSHGLG00100003740DDX2010085.316Heterocephalus_glaber_male
ENSG00000064703DDX209550.936ENSHCOG00000001915ddx209951.064Hippocampus_comes
ENSG00000064703DDX206774.194ENSIPUG00000004876ddx206961.604Ictalurus_punctatus
ENSG00000064703DDX209889.519ENSSTOG00000029089DDX2010089.320Ictidomys_tridecemlineatus
ENSG00000064703DDX2010085.194ENSJJAG00000011198Ddx2010085.194Jaculus_jaculus
ENSG00000064703DDX209550.544ENSKMAG00000019022ddx209950.914Kryptolebias_marmoratus
ENSG00000064703DDX209549.751ENSLBEG00000019194ddx207060.237Labrus_bergylta
ENSG00000064703DDX209554.928ENSLACG00000018491DDX209955.324Latimeria_chalumnae
ENSG00000064703DDX209552.730ENSLOCG00000010372ddx207363.667Lepisosteus_oculatus
ENSG00000064703DDX209883.251ENSLAFG00000014646DDX209982.909Loxodonta_africana
ENSG00000064703DDX2010096.364ENSMFAG00000031755DDX2010096.364Macaca_fascicularis
ENSG00000064703DDX2010096.121ENSMNEG00000005757DDX2010096.121Macaca_nemestrina
ENSG00000064703DDX2010095.636ENSMLEG00000005722DDX2010095.636Mandrillus_leucophaeus
ENSG00000064703DDX206875.532ENSMAMG00000009654ddx207761.929Mastacembelus_armatus
ENSG00000064703DDX209550.243ENSMZEG00005027081ddx207162.267Maylandia_zebra
ENSG00000064703DDX209260.026ENSMGAG00000004624DDX209959.766Meleagris_gallopavo
ENSG00000064703DDX209784.289ENSMAUG00000010659Ddx2010083.414Mesocricetus_auratus
ENSG00000064703DDX2010090.413ENSMICG00000011509DDX2010090.413Microcebus_murinus
ENSG00000064703DDX209982.230ENSMOCG00000012954Ddx2010082.688Microtus_ochrogaster
ENSG00000064703DDX209549.265ENSMMOG00000013103ddx209949.636Mola_mola
ENSG00000064703DDX209675.095ENSMODG00000001311DDX209973.012Monodelphis_domestica
ENSG00000064703DDX208261.880ENSMALG00000010740ddx207861.421Monopterus_albus
ENSG00000064703DDX209983.558MGP_CAROLIEiJ_G0025474Ddx209983.495Mus_caroli
ENSG00000064703DDX209982.699ENSMUSG00000027905Ddx209982.524Mus_musculus
ENSG00000064703DDX209683.965MGP_PahariEiJ_G0026919Ddx209982.826Mus_pahari
ENSG00000064703DDX209983.190MGP_SPRETEiJ_G0026423Ddx209983.010Mus_spretus
ENSG00000064703DDX209889.356ENSMPUG00000004921DDX2010088.835Mustela_putorius_furo
ENSG00000064703DDX209876.066ENSMLUG00000009676DDX2010083.671Myotis_lucifugus
ENSG00000064703DDX2010084.466ENSNGAG00000022953Ddx2010084.466Nannospalax_galili
ENSG00000064703DDX209552.346ENSNBRG00000020244ddx209951.766Neolamprologus_brichardi
ENSG00000064703DDX2010097.937ENSNLEG00000004040DDX2010097.937Nomascus_leucogenys
ENSG00000064703DDX208080.000ENSMEUG00000013459-6377.461Notamacropus_eugenii
ENSG00000064703DDX208384.348ENSOPRG00000004035DDX208691.413Ochotona_princeps
ENSG00000064703DDX208784.167ENSODEG00000007653-9891.265Octodon_degus
ENSG00000064703DDX206874.468ENSONIG00000012436ddx209952.104Oreochromis_niloticus
ENSG00000064703DDX207869.147ENSOANG00000003318DDX209969.876Ornithorhynchus_anatinus
ENSG00000064703DDX209789.950ENSOCUG00000025939DDX2010088.620Oryctolagus_cuniculus
ENSG00000064703DDX209551.308ENSORLG00000008949ddx209950.858Oryzias_latipes
ENSG00000064703DDX209551.564ENSORLG00020003852ddx209950.748Oryzias_latipes_hni
ENSG00000064703DDX209549.257ENSORLG00015020167ddx209950.187Oryzias_latipes_hsok
ENSG00000064703DDX209551.411ENSOMEG00000013657ddx209950.424Oryzias_melastigma
ENSG00000064703DDX2010089.091ENSOGAG00000010503DDX209989.091Otolemur_garnettii
ENSG00000064703DDX209888.957ENSOARG00000019651DDX2010088.768Ovis_aries
ENSG00000064703DDX2010099.029ENSPPAG00000031680DDX2010099.029Pan_paniscus
ENSG00000064703DDX209989.189ENSPPRG00000022979DDX2010089.199Panthera_pardus
ENSG00000064703DDX2010098.908ENSPTRG00000001105DDX2010098.908Pan_troglodytes
ENSG00000064703DDX2010096.000ENSPANG00000017985DDX2010096.000Papio_anubis
ENSG00000064703DDX209250.699ENSPKIG00000020161ddx209952.073Paramormyrops_kingsleyae
ENSG00000064703DDX208860.899ENSPSIG00000003636DDX2010060.899Pelodiscus_sinensis
ENSG00000064703DDX209549.938ENSPMGG00000005966ddx209950.000Periophthalmus_magnuspinnatus
ENSG00000064703DDX209984.663ENSPEMG00000019595Ddx2010084.606Peromyscus_maniculatus_bairdii
ENSG00000064703DDX209973.049ENSPCIG00000027721DDX209973.049Phascolarctos_cinereus
ENSG00000064703DDX209550.670ENSPFOG00000010540ddx209951.609Poecilia_formosa
ENSG00000064703DDX209551.163ENSPLAG00000009925ddx209951.166Poecilia_latipinna
ENSG00000064703DDX209551.166ENSPMEG00000005998ddx209951.361Poecilia_mexicana
ENSG00000064703DDX209551.425ENSPREG00000018837ddx209951.870Poecilia_reticulata
ENSG00000064703DDX2010097.573ENSPPYG00000001026DDX2010097.573Pongo_abelii
ENSG00000064703DDX209680.303ENSPCAG00000007371-7893.810Procavia_capensis
ENSG00000064703DDX2010089.806ENSPCOG00000025185DDX2010089.806Propithecus_coquereli
ENSG00000064703DDX2010087.985ENSPVAG00000004664DDX2010087.985Pteropus_vampyrus
ENSG00000064703DDX209550.365ENSPNYG00000014433ddx207062.479Pundamilia_nyererei
ENSG00000064703DDX206078.313ENSPNAG00000018148ddx207160.951Pygocentrus_nattereri
ENSG00000064703DDX2010083.394ENSRNOG00000015274Ddx2010083.636Rattus_norvegicus
ENSG00000064703DDX2010096.485ENSRBIG00000030629DDX2010096.485Rhinopithecus_bieti
ENSG00000064703DDX2010096.485ENSRROG00000030608DDX2010096.485Rhinopithecus_roxellana
ENSG00000064703DDX2010093.932ENSSBOG00000024789DDX2010093.932Saimiri_boliviensis_boliviensis
ENSG00000064703DDX208473.304ENSSHAG00000014518DDX209973.304Sarcophilus_harrisii
ENSG00000064703DDX206978.947ENSSFOG00015008354ddx209952.905Scleropages_formosus
ENSG00000064703DDX209552.743ENSSDUG00000015980ddx209853.284Seriola_dumerili
ENSG00000064703DDX206873.404ENSSLDG00000000437ddx206561.929Seriola_lalandi_dorsalis
ENSG00000064703DDX209869.431ENSSARG00000013569DDX208872.752Sorex_araneus
ENSG00000064703DDX209750.296ENSSPAG00000020022ddx207060.920Stegastes_partitus
ENSG00000064703DDX209885.679ENSSSCG00000006783DDX209984.477Sus_scrofa
ENSG00000064703DDX208163.353ENSTGUG00000013660DDX208667.731Taeniopygia_guttata
ENSG00000064703DDX209549.440ENSTRUG00000023712ddx207159.418Takifugu_rubripes
ENSG00000064703DDX209549.700ENSTNIG00000019425ddx209949.157Tetraodon_nigroviridis
ENSG00000064703DDX209881.604ENSTTRG00000005131DDX208487.766Tursiops_truncatus
ENSG00000064703DDX209886.313ENSUAMG00000018924DDX2010089.969Ursus_americanus
ENSG00000064703DDX209881.517ENSUMAG00000013897DDX209287.724Ursus_maritimus
ENSG00000064703DDX209886.716ENSVPAG00000010031DDX2010086.562Vicugna_pacos
ENSG00000064703DDX2010086.893ENSVVUG00000016236DDX2010086.893Vulpes_vulpes
ENSG00000064703DDX209456.483ENSXETG00000013568ddx209955.964Xenopus_tropicalis
ENSG00000064703DDX209550.988ENSXCOG00000007952ddx209750.864Xiphophorus_couchianus
ENSG00000064703DDX209551.292ENSXMAG00000007573ddx209950.983Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000122negative regulation of transcription by RNA polymerase II12007404.IDAProcess
GO:0000244spliceosomal tri-snRNP complex assembly10601333.TASProcess
GO:0000387spliceosomal snRNP assembly18984161.IDAProcess
GO:0000387spliceosomal snRNP assembly-TASProcess
GO:0003677DNA binding-IEAFunction
GO:0004004ATP-dependent RNA helicase activity10383418.TASFunction
GO:0005515protein binding11714716.19750007.21800163.23752268.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus10383418.TASComponent
GO:0005654nucleoplasm-TASComponent
GO:0005737cytoplasm10601333.TASComponent
GO:0005829cytosol18984161.20513430.IDAComponent
GO:0005829cytosol-TASComponent
GO:0005856cytoskeleton10383418.TASComponent
GO:0006396RNA processing10601333.TASProcess
GO:0008285negative regulation of cell proliferation-IEAProcess
GO:0016020membrane19946888.HDAComponent
GO:0019904protein domain specific binding-IEAFunction
GO:0030674protein binding, bridging-IEAFunction
GO:0032797SMN complex18984161.IDAComponent
GO:0034719SMN-Sm protein complex18984161.IDAComponent
GO:0042826histone deacetylase binding-IEAFunction
GO:0043065positive regulation of apoptotic process16153597.IGIProcess
GO:0043065positive regulation of apoptotic process-ISSProcess
GO:0048477oogenesis-IEAProcess
GO:0050810regulation of steroid biosynthetic process-IEAProcess
GO:0051170import into nucleus-TASProcess
GO:0070491repressing transcription factor binding12007404.IPIFunction
GO:0090571RNA polymerase II transcription repressor complex-IEAComponent
GO:0097504Gemini of coiled bodies-IEAComponent

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