EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000065548 (Gene tree)
Gene ID: 55854
Gene Symbol: ZC3H15
Alias: LEREPO4
Full Name: zinc finger CCCH-type containing 15
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Plus strand
Length: 23,208 bases
Position: chr2:186,486,156-186,509,363
Accession: 29528
RBP type: canonical RBP
Summary: (Zinc Finger CCCH-Type Containing 15) is a Protein Coding gene.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000338788	zf-CCCH	PF00642.24	5.8e-06	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
22681889	The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts	4SURIC & HEK293	2012 May	Baltz AG	DOI: 10.1016/j.molcel.2012.05.021
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
29431736	Capturing the interactome of newly transcribed RNA	RIC & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
22658674	Insights into RNA biology from an atlas of mammalian mRNA-binding proteins	RIC & Hela	2012 May 31	Castello A	DOI: 10.1016/j.cell.2012.04.031
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & U2OS	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30352994	Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture	RIC & Jurkat	2018 Oct 23	Perez-Perri JI	DOI:10.1038/s41467-018-06557-8

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000421536	ZC3H15-202	1101	-	ENSP00000410981	105 (aa)	-	F8WB26
ENST00000445547	ZC3H15-204	776	-	ENSP00000415788	71 (aa)	-	H7C466
ENST00000481101	ZC3H15-207	558	-	-	- (aa)	-	-
ENST00000498757	ZC3H15-209	881	-	-	- (aa)	-	-
ENST00000337859	ZC3H15-201	2138	XM_017004502	ENSP00000338788	426 (aa)	XP_016859991	Q8WU90
ENST00000437396	ZC3H15-203	556	-	ENSP00000407192	74 (aa)	-	F8WF67
ENST00000468120	ZC3H15-205	601	-	-	- (aa)	-	-
ENST00000496289	ZC3H15-208	554	-	-	- (aa)	-	-
ENST00000477672	ZC3H15-206	304	-	-	- (aa)	-	-

Gene Model

Click here to download ENSG00000065548's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000065548's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000065548	ZC3H15	93	81.633	ENSAPOG00000009186	zc3h15	96	73.558	Acanthochromis_polyacanthus
ENSG00000065548	ZC3H15	100	99.061	ENSAMEG00000008314	ZC3H15	100	99.061	Ailuropoda_melanoleuca
ENSG00000065548	ZC3H15	100	72.897	ENSACIG00000009204	zc3h15	96	73.735	Amphilophus_citrinellus
ENSG00000065548	ZC3H15	100	75.463	ENSAOCG00000007675	zc3h15	96	74.822	Amphiprion_ocellaris
ENSG00000065548	ZC3H15	100	74.885	ENSAPEG00000014281	zc3h15	96	73.893	Amphiprion_percula
ENSG00000065548	ZC3H15	100	71.982	ENSATEG00000016978	zc3h15	96	71.596	Anabas_testudineus
ENSG00000065548	ZC3H15	96	86.861	ENSAPLG00000005971	ZC3H15	96	86.861	Anas_platyrhynchos
ENSG00000065548	ZC3H15	90	88.601	ENSACAG00000001916	ZC3H15	95	88.542	Anolis_carolinensis
ENSG00000065548	ZC3H15	100	98.826	ENSANAG00000026203	ZC3H15	100	98.826	Aotus_nancymaae
ENSG00000065548	ZC3H15	93	79.592	ENSACLG00000027219	zc3h15	96	75.397	Astatotilapia_calliptera
ENSG00000065548	ZC3H15	100	71.789	ENSAMXG00000032853	zc3h15	96	72.381	Astyanax_mexicanus
ENSG00000065548	ZC3H15	100	98.826	ENSBTAG00000021762	ZC3H15	100	98.826	Bos_taurus
ENSG00000065548	ZC3H15	100	98.826	ENSCJAG00000005931	ZC3H15	100	98.826	Callithrix_jacchus
ENSG00000065548	ZC3H15	94	99.002	ENSCAFG00000014494	ZC3H15	96	99.002	Canis_familiaris
ENSG00000065548	ZC3H15	100	99.061	ENSCAFG00020008457	ZC3H15	100	99.061	Canis_lupus_dingo
ENSG00000065548	ZC3H15	96	97.311	ENSCHIG00000026136	-	98	97.311	Capra_hircus
ENSG00000065548	ZC3H15	100	99.061	ENSTSYG00000011019	ZC3H15	100	99.061	Carlito_syrichta
ENSG00000065548	ZC3H15	91	94.315	ENSCAPG00000009954	ZC3H15	95	94.764	Cavia_aperea
ENSG00000065548	ZC3H15	100	96.948	ENSCPOG00000012965	ZC3H15	100	96.948	Cavia_porcellus
ENSG00000065548	ZC3H15	100	99.061	ENSCCAG00000035677	-	100	99.061	Cebus_capucinus
ENSG00000065548	ZC3H15	100	99.765	ENSCATG00000030359	ZC3H15	100	99.765	Cercocebus_atys
ENSG00000065548	ZC3H15	100	97.653	ENSCLAG00000016439	ZC3H15	100	97.653	Chinchilla_lanigera
ENSG00000065548	ZC3H15	100	99.765	ENSCSAG00000012554	ZC3H15	100	99.765	Chlorocebus_sabaeus
ENSG00000065548	ZC3H15	94	97.257	ENSCHOG00000011958	ZC3H15	100	97.257	Choloepus_hoffmanni
ENSG00000065548	ZC3H15	90	89.034	ENSCPBG00000001108	ZC3H15	99	88.618	Chrysemys_picta_bellii
ENSG00000065548	ZC3H15	99	56.206	ENSCING00000006888	-	96	55.961	Ciona_intestinalis
ENSG00000065548	ZC3H15	100	99.531	ENSCANG00000031974	ZC3H15	100	99.531	Colobus_angolensis_palliatus
ENSG00000065548	ZC3H15	92	100.000	ENSCGRG00001019781	Zc3h15	96	95.844	Cricetulus_griseus_chok1gshd
ENSG00000065548	ZC3H15	90	95.573	ENSCGRG00000000943	Zc3h15	95	95.550	Cricetulus_griseus_crigri
ENSG00000065548	ZC3H15	93	77.551	ENSCSEG00000017422	zc3h15	95	71.462	Cynoglossus_semilaevis
ENSG00000065548	ZC3H15	100	73.611	ENSCVAG00000016138	zc3h15	96	73.381	Cyprinodon_variegatus
ENSG00000065548	ZC3H15	90	74.680	ENSDARG00000015889	zc3h15	96	74.641	Danio_rerio
ENSG00000065548	ZC3H15	93	82.323	ENSDNOG00000035570	-	91	82.586	Dasypus_novemcinctus
ENSG00000065548	ZC3H15	100	97.653	ENSDNOG00000046919	-	100	97.653	Dasypus_novemcinctus
ENSG00000065548	ZC3H15	93	95.918	ENSDORG00000029591	-	96	85.330	Dipodomys_ordii
ENSG00000065548	ZC3H15	100	97.418	ENSDORG00000011664	-	100	97.418	Dipodomys_ordii
ENSG00000065548	ZC3H15	81	75.000	FBgn0033317	CG8635	96	53.659	Drosophila_melanogaster
ENSG00000065548	ZC3H15	100	98.826	ENSEASG00005022074	ZC3H15	100	98.826	Equus_asinus_asinus
ENSG00000065548	ZC3H15	100	98.826	ENSECAG00000017149	ZC3H15	100	98.826	Equus_caballus
ENSG00000065548	ZC3H15	93	80.808	ENSELUG00000013629	zc3h15	96	70.208	Esox_lucius
ENSG00000065548	ZC3H15	100	70.000	ENSELUG00000000912	-	96	68.523	Esox_lucius
ENSG00000065548	ZC3H15	100	98.826	ENSFCAG00000008213	ZC3H15	100	98.826	Felis_catus
ENSG00000065548	ZC3H15	92	93.878	ENSFALG00000004566	ZC3H15	96	87.167	Ficedula_albicollis
ENSG00000065548	ZC3H15	100	97.653	ENSFDAG00000020578	ZC3H15	100	97.653	Fukomys_damarensis
ENSG00000065548	ZC3H15	100	72.622	ENSFHEG00000012799	zc3h15	84	73.671	Fundulus_heteroclitus
ENSG00000065548	ZC3H15	100	65.753	ENSGMOG00000002398	zc3h15	96	67.139	Gadus_morhua
ENSG00000065548	ZC3H15	92	91.837	ENSGALG00000041857	ZC3H15	96	87.379	Gallus_gallus
ENSG00000065548	ZC3H15	100	71.528	ENSGAFG00000003724	zc3h15	96	72.596	Gambusia_affinis
ENSG00000065548	ZC3H15	94	68.704	ENSGACG00000011648	zc3h15	96	69.212	Gasterosteus_aculeatus
ENSG00000065548	ZC3H15	90	88.773	ENSGAGG00000023689	ZC3H15	96	88.592	Gopherus_agassizii
ENSG00000065548	ZC3H15	100	99.531	ENSGGOG00000000073	ZC3H15	100	99.531	Gorilla_gorilla
ENSG00000065548	ZC3H15	93	77.551	ENSHBUG00000001003	zc3h15	96	70.905	Haplochromis_burtoni
ENSG00000065548	ZC3H15	100	96.714	ENSHGLG00000019121	-	100	96.714	Heterocephalus_glaber_female
ENSG00000065548	ZC3H15	92	90.722	ENSHGLG00100011099	-	96	82.641	Heterocephalus_glaber_male
ENSG00000065548	ZC3H15	100	92.254	ENSHGLG00100000509	-	100	92.254	Heterocephalus_glaber_male
ENSG00000065548	ZC3H15	96	89.720	ENSHGLG00100000040	-	96	84.928	Heterocephalus_glaber_male
ENSG00000065548	ZC3H15	93	79.592	ENSIPUG00000002902	zc3h15	85	70.629	Ictalurus_punctatus
ENSG00000065548	ZC3H15	100	98.592	ENSSTOG00000006873	ZC3H15	100	98.592	Ictidomys_tridecemlineatus
ENSG00000065548	ZC3H15	100	97.653	ENSJJAG00000021088	-	100	97.653	Jaculus_jaculus
ENSG00000065548	ZC3H15	100	75.000	ENSKMAG00000007580	zc3h15	96	75.182	Kryptolebias_marmoratus
ENSG00000065548	ZC3H15	97	68.765	ENSLBEG00000002637	zc3h15	95	69.374	Labrus_bergylta
ENSG00000065548	ZC3H15	92	85.567	ENSLACG00000002935	ZC3H15	96	79.805	Latimeria_chalumnae
ENSG00000065548	ZC3H15	100	98.122	ENSLAFG00000001563	-	100	98.122	Loxodonta_africana
ENSG00000065548	ZC3H15	100	99.765	ENSMFAG00000001625	ZC3H15	100	99.765	Macaca_fascicularis
ENSG00000065548	ZC3H15	100	99.765	ENSMMUG00000017248	ZC3H15	100	99.765	Macaca_mulatta
ENSG00000065548	ZC3H15	100	99.765	ENSMNEG00000031479	ZC3H15	100	99.765	Macaca_nemestrina
ENSG00000065548	ZC3H15	100	99.765	ENSMLEG00000033522	ZC3H15	100	99.765	Mandrillus_leucophaeus
ENSG00000065548	ZC3H15	93	78.571	ENSMAMG00000022415	zc3h15	92	78.670	Mastacembelus_armatus
ENSG00000065548	ZC3H15	100	73.843	ENSMZEG00005027294	zc3h15	96	73.735	Maylandia_zebra
ENSG00000065548	ZC3H15	77	87.952	ENSMGAG00000004447	ZC3H15	95	87.535	Meleagris_gallopavo
ENSG00000065548	ZC3H15	100	96.479	ENSMAUG00000016743	Zc3h15	100	96.479	Mesocricetus_auratus
ENSG00000065548	ZC3H15	100	98.826	ENSMICG00000014245	ZC3H15	100	98.826	Microcebus_murinus
ENSG00000065548	ZC3H15	96	95.844	ENSMOCG00000019087	Zc3h15	96	95.844	Microtus_ochrogaster
ENSG00000065548	ZC3H15	97	70.588	ENSMMOG00000006803	zc3h15	89	72.821	Mola_mola
ENSG00000065548	ZC3H15	100	70.320	ENSMALG00000022151	zc3h15	96	69.718	Monopterus_albus
ENSG00000065548	ZC3H15	92	100.000	MGP_CAROLIEiJ_G0023713	Zc3h15	96	95.355	Mus_caroli
ENSG00000065548	ZC3H15	92	100.000	ENSMUSG00000027091	Zc3h15	96	95.355	Mus_musculus
ENSG00000065548	ZC3H15	92	100.000	MGP_SPRETEiJ_G0024633	Zc3h15	96	95.355	Mus_spretus
ENSG00000065548	ZC3H15	100	98.826	ENSMPUG00000003521	ZC3H15	100	98.826	Mustela_putorius_furo
ENSG00000065548	ZC3H15	90	94.531	ENSMLUG00000007741	ZC3H15	95	94.503	Myotis_lucifugus
ENSG00000065548	ZC3H15	100	74.648	ENSNGAG00000020356	-	96	71.149	Nannospalax_galili
ENSG00000065548	ZC3H15	100	96.479	ENSNGAG00000005723	-	100	96.479	Nannospalax_galili
ENSG00000065548	ZC3H15	94	68.500	ENSNBRG00000008737	zc3h15	96	70.171	Neolamprologus_brichardi
ENSG00000065548	ZC3H15	100	99.531	ENSNLEG00000006446	ZC3H15	100	99.531	Nomascus_leucogenys
ENSG00000065548	ZC3H15	86	97.820	ENSOPRG00000015790	ZC3H15	100	97.820	Ochotona_princeps
ENSG00000065548	ZC3H15	100	96.948	ENSODEG00000010533	-	100	96.948	Octodon_degus
ENSG00000065548	ZC3H15	100	73.843	ENSONIG00000001456	zc3h15	96	74.341	Oreochromis_niloticus
ENSG00000065548	ZC3H15	95	92.079	ENSOANG00000015742	ZC3H15	91	92.428	Ornithorhynchus_anatinus
ENSG00000065548	ZC3H15	100	98.357	ENSOCUG00000011903	ZC3H15	100	98.357	Oryctolagus_cuniculus
ENSG00000065548	ZC3H15	93	78.571	ENSORLG00000018606	zc3h15	96	72.289	Oryzias_latipes
ENSG00000065548	ZC3H15	93	81.633	ENSOMEG00000015919	zc3h15	96	73.798	Oryzias_melastigma
ENSG00000065548	ZC3H15	100	98.598	ENSOGAG00000002182	ZC3H15	100	98.598	Otolemur_garnettii
ENSG00000065548	ZC3H15	100	98.592	ENSOARG00000016623	-	100	98.592	Ovis_aries
ENSG00000065548	ZC3H15	100	98.826	ENSPPAG00000004038	-	100	98.826	Pan_paniscus
ENSG00000065548	ZC3H15	100	99.765	ENSPPAG00000042759	-	100	99.765	Pan_paniscus
ENSG00000065548	ZC3H15	100	99.061	ENSPPRG00000024845	ZC3H15	100	99.061	Panthera_pardus
ENSG00000065548	ZC3H15	100	99.061	ENSPTIG00000012514	ZC3H15	100	99.061	Panthera_tigris_altaica
ENSG00000065548	ZC3H15	100	99.765	ENSPTRG00000012717	ZC3H15	100	99.765	Pan_troglodytes
ENSG00000065548	ZC3H15	100	99.765	ENSPANG00000007787	ZC3H15	100	99.765	Papio_anubis
ENSG00000065548	ZC3H15	93	78.788	ENSPKIG00000022132	zc3h15	96	73.113	Paramormyrops_kingsleyae
ENSG00000065548	ZC3H15	100	88.785	ENSPSIG00000014470	ZC3H15	96	89.051	Pelodiscus_sinensis
ENSG00000065548	ZC3H15	100	70.930	ENSPMGG00000001555	zc3h15	96	71.981	Periophthalmus_magnuspinnatus
ENSG00000065548	ZC3H15	96	96.088	ENSPEMG00000013093	-	96	96.088	Peromyscus_maniculatus_bairdii
ENSG00000065548	ZC3H15	94	68.627	ENSPMAG00000007532	zc3h15	96	65.166	Petromyzon_marinus
ENSG00000065548	ZC3H15	96	93.415	ENSPCIG00000019112	ZC3H15	96	93.415	Phascolarctos_cinereus
ENSG00000065548	ZC3H15	100	72.917	ENSPFOG00000006525	zc3h15	96	72.727	Poecilia_formosa
ENSG00000065548	ZC3H15	100	73.148	ENSPLAG00000010602	zc3h15	96	72.684	Poecilia_latipinna
ENSG00000065548	ZC3H15	100	73.148	ENSPMEG00000001074	zc3h15	96	72.967	Poecilia_mexicana
ENSG00000065548	ZC3H15	100	72.158	ENSPREG00000004618	zc3h15	96	71.327	Poecilia_reticulata
ENSG00000065548	ZC3H15	100	99.531	ENSPPYG00000013004	ZC3H15	100	99.531	Pongo_abelii
ENSG00000065548	ZC3H15	93	98.980	ENSPCAG00000008499	ZC3H15	100	88.498	Procavia_capensis
ENSG00000065548	ZC3H15	100	77.049	ENSPCOG00000020940	-	90	78.851	Propithecus_coquereli
ENSG00000065548	ZC3H15	100	99.061	ENSPCOG00000005647	ZC3H15	100	99.061	Propithecus_coquereli
ENSG00000065548	ZC3H15	92	100.000	ENSPVAG00000004828	ZC3H15	99	94.859	Pteropus_vampyrus
ENSG00000065548	ZC3H15	100	73.210	ENSPNYG00000010768	zc3h15	96	73.397	Pundamilia_nyererei
ENSG00000065548	ZC3H15	100	71.106	ENSPNAG00000010830	zc3h15	96	71.327	Pygocentrus_nattereri
ENSG00000065548	ZC3H15	96	87.286	ENSRNOG00000060002	AC115670.1	96	87.286	Rattus_norvegicus
ENSG00000065548	ZC3H15	100	96.479	ENSRNOG00000005256	Zc3h15	100	96.479	Rattus_norvegicus
ENSG00000065548	ZC3H15	98	96.420	ENSRBIG00000016836	ZC3H15	99	96.420	Rhinopithecus_bieti
ENSG00000065548	ZC3H15	100	99.765	ENSRROG00000028243	ZC3H15	100	99.765	Rhinopithecus_roxellana
ENSG00000065548	ZC3H15	100	99.061	ENSSBOG00000020564	ZC3H15	100	99.061	Saimiri_boliviensis_boliviensis
ENSG00000065548	ZC3H15	96	93.902	ENSSHAG00000008130	ZC3H15	96	93.902	Sarcophilus_harrisii
ENSG00000065548	ZC3H15	93	78.788	ENSSFOG00015002295	zc3h15	96	72.748	Scleropages_formosus
ENSG00000065548	ZC3H15	100	67.882	ENSSMAG00000001788	zc3h15	84	67.517	Scophthalmus_maximus
ENSG00000065548	ZC3H15	100	73.394	ENSSDUG00000014445	zc3h15	96	72.986	Seriola_dumerili
ENSG00000065548	ZC3H15	100	69.746	ENSSLDG00000017569	zc3h15	96	69.267	Seriola_lalandi_dorsalis
ENSG00000065548	ZC3H15	86	98.093	ENSSARG00000012071	ZC3H15	100	98.093	Sorex_araneus
ENSG00000065548	ZC3H15	96	75.787	ENSSPUG00000012016	ZC3H15	90	80.412	Sphenodon_punctatus
ENSG00000065548	ZC3H15	93	80.612	ENSSPAG00000023191	zc3h15	96	72.596	Stegastes_partitus
ENSG00000065548	ZC3H15	100	98.357	ENSSSCG00000016026	ZC3H15	100	98.357	Sus_scrofa
ENSG00000065548	ZC3H15	92	94.898	ENSTGUG00000011131	ZC3H15	96	87.651	Taeniopygia_guttata
ENSG00000065548	ZC3H15	93	78.571	ENSTRUG00000004988	zc3h15	96	71.807	Takifugu_rubripes
ENSG00000065548	ZC3H15	93	78.571	ENSTNIG00000009860	zc3h15	100	77.591	Tetraodon_nigroviridis
ENSG00000065548	ZC3H15	76	72.549	ENSTBEG00000015530	-	80	72.353	Tupaia_belangeri
ENSG00000065548	ZC3H15	92	100.000	ENSTTRG00000012425	ZC3H15	96	95.355	Tursiops_truncatus
ENSG00000065548	ZC3H15	98	96.643	ENSUAMG00000023433	ZC3H15	98	96.643	Ursus_americanus
ENSG00000065548	ZC3H15	100	99.061	ENSUMAG00000017161	ZC3H15	100	99.061	Ursus_maritimus
ENSG00000065548	ZC3H15	95	98.762	ENSVPAG00000006980	ZC3H15	100	98.762	Vicugna_pacos
ENSG00000065548	ZC3H15	95	98.267	ENSVVUG00000016921	ZC3H15	100	98.267	Vulpes_vulpes
ENSG00000065548	ZC3H15	99	78.972	ENSXETG00000013336	zc3h15	96	78.641	Xenopus_tropicalis
ENSG00000065548	ZC3H15	100	71.963	ENSXCOG00000014248	zc3h15	96	72.019	Xiphophorus_couchianus
ENSG00000065548	ZC3H15	100	71.528	ENSXMAG00000000989	zc3h15	96	71.667	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002181	cytoplasmic translation	21873635.	IBA	Process
GO:0003723	RNA binding	22658674.22681889.	HDA	Function
GO:0005515	protein binding	19819225.21516116.25416956.	IPI	Function
GO:0005730	nucleolus	-	IDA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	-	IDA	Component
GO:0019221	cytokine-mediated signaling pathway	-	IEA	Process
GO:0043547	positive regulation of GTPase activity	23711155.	IDA	Process
GO:0045296	cadherin binding	25468996.	HDA	Function
GO:0046872	metal ion binding	-	IEA	Function