EuRBPDB

Description

Ensembl ID: ENSG00000066557 (Gene tree)
Gene ID: 55631
Gene Symbol: LRRC40
Alias: FLJ20331
Full Name: leucine rich repeat containing 40
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 60,877 bases
Position: chr1:70,144,802-70,205,678
Accession: 26004
RBP type: non-canonical RBP
Summary: (Leucine Rich Repeat Containing 40) is a Protein Coding gene. An important paralog of this gene is LRRD1.

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
29431736	Capturing the interactome of newly transcribed RNA	RICK & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000370952	LRRC40-201	2884	XM_005271013	ENSP00000359990	602 (aa)	XP_005271070	Q9H9A6

Gene Model

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000066557	Erythrocyte Count	1.3050000E-006	-
ENSG00000066557	Erythrocyte Count	2.3250000E-006	-

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000066557	rs527331373	1	70179667	?	General cognitive ability	29844566	z-score increase	4.496	EFO_0004337

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0016020	membrane	19946888.	HDA	Component