EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000066654 (Gene tree)
Gene ID
55623
Gene Symbol
THUMPD1
Alias
FLJ20274|Tan1
Full Name
THUMP domain containing 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
39,269 bases
Position
chr16:20,702,816-20,742,084
Accession
23807
RBP type
canonical RBP
Summary
(THUMP Domain Containing 1) is a Protein Coding gene. Among its related pathways are rRNA processing in the nucleus and cytosol and Gene Expression. Gene Ontology (GO) annotations related to this gene include RNA binding.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000370741THUMPPF02926.171.7e-2411
ENSP00000379392THUMPPF02926.171.7e-2411
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000396083THUMPD1-2022624XM_017023433ENSP00000379392353 (aa)XP_016878922Q9NXG2
ENST00000636554THUMPD1-2062567-ENSP00000490841353 (aa)-Q9NXG2
ENST00000565248THUMPD1-2031099-ENSP00000455033145 (aa)-H3BNW0
ENST00000570231THUMPD1-2051040--- (aa)--
ENST00000381337THUMPD1-2014122XM_011545891ENSP00000370741353 (aa)XP_011544193Q9NXG2
ENST00000569768THUMPD1-204635--- (aa)--
Gene Model
Click here to download ENSG00000066654's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000066654's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000066654THUMPD19047.407ENSAPOG00000008440thumpd18558.984Acanthochromis_polyacanthus
ENSG00000066654THUMPD110088.547ENSAMEG00000006257THUMPD19988.547Ailuropoda_melanoleuca
ENSG00000066654THUMPD18847.656ENSACIG00000024395thumpd18157.934Amphilophus_citrinellus
ENSG00000066654THUMPD18552.614ENSAOCG00000003509thumpd18953.268Amphiprion_ocellaris
ENSG00000066654THUMPD18552.614ENSAPEG00000010515thumpd18953.268Amphiprion_percula
ENSG00000066654THUMPD18553.465ENSATEG00000004737thumpd19553.465Anabas_testudineus
ENSG00000066654THUMPD16978.947ENSAPLG00000015259THUMPD18679.757Anas_platyrhynchos
ENSG00000066654THUMPD18661.654ENSACAG00000009625-9368.350Anolis_carolinensis
ENSG00000066654THUMPD19976.857ENSANAG00000027311-10076.857Aotus_nancymaae
ENSG00000066654THUMPD110095.751ENSANAG00000026882-10095.751Aotus_nancymaae
ENSG00000066654THUMPD19389.630ENSANAG00000027040-10079.887Aotus_nancymaae
ENSG00000066654THUMPD18447.154ENSACLG00000004830thumpd17957.692Astatotilapia_calliptera
ENSG00000066654THUMPD18354.545ENSAMXG00000012356thumpd18060.902Astyanax_mexicanus
ENSG00000066654THUMPD19988.796ENSBTAG00000047673THUMPD110088.796Bos_taurus
ENSG00000066654THUMPD19695.870ENSCJAG00000009499THUMPD110095.467Callithrix_jacchus
ENSG00000066654THUMPD110088.235ENSCAFG00000017985THUMPD19988.235Canis_familiaris
ENSG00000066654THUMPD110088.235ENSCAFG00020021861THUMPD19988.235Canis_lupus_dingo
ENSG00000066654THUMPD19987.955ENSCHIG00000010134THUMPD19987.955Capra_hircus
ENSG00000066654THUMPD110090.113ENSTSYG00000011537THUMPD110090.113Carlito_syrichta
ENSG00000066654THUMPD19684.164ENSCPOG00000008919-10084.225Cavia_porcellus
ENSG00000066654THUMPD19684.164ENSCPOG00000023684-10084.225Cavia_porcellus
ENSG00000066654THUMPD110087.535ENSCCAG00000019379-8687.535Cebus_capucinus
ENSG00000066654THUMPD110095.184ENSCCAG00000030205THUMPD110095.184Cebus_capucinus
ENSG00000066654THUMPD110098.300ENSCATG00000040309THUMPD110098.300Cercocebus_atys
ENSG00000066654THUMPD19980.672ENSCATG00000020844-9980.672Cercocebus_atys
ENSG00000066654THUMPD110085.028ENSCLAG00000016508THUMPD110085.028Chinchilla_lanigera
ENSG00000066654THUMPD19998.295ENSCSAG00000007610THUMPD19998.295Chlorocebus_sabaeus
ENSG00000066654THUMPD110075.140ENSCSAG00000009860-8075.140Chlorocebus_sabaeus
ENSG00000066654THUMPD110086.592ENSCHOG00000005587THUMPD110086.592Choloepus_hoffmanni
ENSG00000066654THUMPD19371.324ENSCPBG00000019055THUMPD18474.916Chrysemys_picta_bellii
ENSG00000066654THUMPD18790.196ENSCANG00000038770THUMPD110090.196Colobus_angolensis_palliatus
ENSG00000066654THUMPD18785.390ENSCANG00000035822-10085.390Colobus_angolensis_palliatus
ENSG00000066654THUMPD19391.852ENSCGRG00001014829Thumpd110083.616Cricetulus_griseus_chok1gshd
ENSG00000066654THUMPD19391.852ENSCGRG00000000060Thumpd110083.616Cricetulus_griseus_crigri
ENSG00000066654THUMPD18254.082ENSCSEG00000002041thumpd19054.355Cynoglossus_semilaevis
ENSG00000066654THUMPD17859.859ENSCVAG00000014960thumpd18956.291Cyprinodon_variegatus
ENSG00000066654THUMPD18848.547ENSDARG00000100264thumpd19948.547Danio_rerio
ENSG00000066654THUMPD110088.268ENSDNOG00000043510THUMPD110088.268Dasypus_novemcinctus
ENSG00000066654THUMPD19981.586ENSDORG00000028216Thumpd19981.586Dipodomys_ordii
ENSG00000066654THUMPD17334.909FBgn0035532CG150148733.779Drosophila_melanogaster
ENSG00000066654THUMPD19383.088ENSETEG00000002763THUMPD18476.602Echinops_telfairi
ENSG00000066654THUMPD18438.931ENSEBUG00000011011THUMPD17442.960Eptatretus_burgeri
ENSG00000066654THUMPD15483.756ENSEASG00005017428-10083.756Equus_asinus_asinus
ENSG00000066654THUMPD110087.430ENSECAG00000005354THUMPD110087.430Equus_caballus
ENSG00000066654THUMPD110083.471ENSEEUG00000011256THUMPD18884.022Erinaceus_europaeus
ENSG00000066654THUMPD18651.613ENSELUG00000013612thumpd16161.069Esox_lucius
ENSG00000066654THUMPD110089.106ENSFCAG00000039296THUMPD110089.106Felis_catus
ENSG00000066654THUMPD16479.386ENSFALG00000014029THUMPD19572.453Ficedula_albicollis
ENSG00000066654THUMPD17854.965ENSFHEG00000013319thumpd18652.288Fundulus_heteroclitus
ENSG00000066654THUMPD18554.472ENSGMOG00000003369thumpd19455.298Gadus_morhua
ENSG00000066654THUMPD18652.117ENSGAFG00000011000thumpd19252.443Gambusia_affinis
ENSG00000066654THUMPD18153.390ENSGACG00000019511thumpd17860.784Gasterosteus_aculeatus
ENSG00000066654THUMPD19370.588ENSGAGG00000008225THUMPD18477.372Gopherus_agassizii
ENSG00000066654THUMPD19671.976ENSGGOG00000043232-10072.238Gorilla_gorilla
ENSG00000066654THUMPD110098.584ENSGGOG00000005231-8098.584Gorilla_gorilla
ENSG00000066654THUMPD18446.457ENSHBUG00000017996thumpd17957.308Haplochromis_burtoni
ENSG00000066654THUMPD16071.963ENSHGLG00000000952-10071.963Heterocephalus_glaber_female
ENSG00000066654THUMPD110085.915ENSHGLG00000011001-10085.915Heterocephalus_glaber_female
ENSG00000066654THUMPD16071.963ENSHGLG00100010577-10071.963Heterocephalus_glaber_male
ENSG00000066654THUMPD110086.479ENSHGLG00100016023THUMPD110086.479Heterocephalus_glaber_male
ENSG00000066654THUMPD19351.852ENSHCOG00000008618thumpd15654.918Hippocampus_comes
ENSG00000066654THUMPD17257.944ENSIPUG00000012500thumpd16654.064Ictalurus_punctatus
ENSG00000066654THUMPD110088.983ENSSTOG00000007011THUMPD110088.983Ictidomys_tridecemlineatus
ENSG00000066654THUMPD110083.333ENSJJAG00000004295-10083.333Jaculus_jaculus
ENSG00000066654THUMPD18346.094ENSKMAG00000009545thumpd17845.538Kryptolebias_marmoratus
ENSG00000066654THUMPD16663.713ENSLBEG00000009349thumpd18856.338Labrus_bergylta
ENSG00000066654THUMPD19456.486ENSLACG00000005833THUMPD19856.486Latimeria_chalumnae
ENSG00000066654THUMPD17760.498ENSLOCG00000000854thumpd19558.784Lepisosteus_oculatus
ENSG00000066654THUMPD110084.078ENSLAFG00000025838THUMPD110084.078Loxodonta_africana
ENSG00000066654THUMPD110098.300ENSMFAG00000036996THUMPD110098.300Macaca_fascicularis
ENSG00000066654THUMPD18781.672ENSMFAG00000041474-10081.672Macaca_fascicularis
ENSG00000066654THUMPD110098.300ENSMMUG00000004225THUMPD110098.300Macaca_mulatta
ENSG00000066654THUMPD18781.350ENSMMUG00000038414-10081.350Macaca_mulatta
ENSG00000066654THUMPD18781.029ENSMNEG00000038856-10081.029Macaca_nemestrina
ENSG00000066654THUMPD110098.300ENSMNEG00000020726THUMPD110098.300Macaca_nemestrina
ENSG00000066654THUMPD110098.017ENSMLEG00000036436THUMPD110098.017Mandrillus_leucophaeus
ENSG00000066654THUMPD18780.583ENSMLEG00000030012-9980.583Mandrillus_leucophaeus
ENSG00000066654THUMPD19248.872ENSMAMG00000006858thumpd18158.456Mastacembelus_armatus
ENSG00000066654THUMPD18446.457ENSMZEG00005013693thumpd17957.308Maylandia_zebra
ENSG00000066654THUMPD15778.049ENSMGAG00000010340THUMPD19978.049Meleagris_gallopavo
ENSG00000066654THUMPD110083.616ENSMAUG00000013306Thumpd110083.616Mesocricetus_auratus
ENSG00000066654THUMPD110091.808ENSMICG00000038483-10091.808Microcebus_murinus
ENSG00000066654THUMPD19972.286ENSMICG00000030865-9672.286Microcebus_murinus
ENSG00000066654THUMPD19393.333ENSMOCG00000003447Thumpd110085.593Microtus_ochrogaster
ENSG00000066654THUMPD18450.820ENSMMOG00000011323thumpd17857.736Mola_mola
ENSG00000066654THUMPD19382.482ENSMODG00000006971-9875.000Monodelphis_domestica
ENSG00000066654THUMPD19381.752ENSMODG00000024776-9975.000Monodelphis_domestica
ENSG00000066654THUMPD18250.420ENSMALG00000019522thumpd19653.135Monopterus_albus
ENSG00000066654THUMPD110083.003MGP_CAROLIEiJ_G0030382Thumpd110083.003Mus_caroli
ENSG00000066654THUMPD110083.853ENSMUSG00000030942Thumpd110083.853Mus_musculus
ENSG00000066654THUMPD110082.817MGP_PahariEiJ_G0013593Thumpd110082.817Mus_pahari
ENSG00000066654THUMPD19085.625ENSMLUG00000010547THUMPD19085.625Myotis_lucifugus
ENSG00000066654THUMPD19986.119ENSNGAG00000018643Thumpd110086.119Nannospalax_galili
ENSG00000066654THUMPD18052.941ENSNBRG00000006987thumpd18053.472Neolamprologus_brichardi
ENSG00000066654THUMPD110098.584ENSNLEG00000012369THUMPD110098.584Nomascus_leucogenys
ENSG00000066654THUMPD110069.209ENSOPRG00000011342THUMPD18669.209Ochotona_princeps
ENSG00000066654THUMPD110083.380ENSODEG00000012360THUMPD110083.380Octodon_degus
ENSG00000066654THUMPD18052.941ENSONIG00000000146thumpd19653.287Oreochromis_niloticus
ENSG00000066654THUMPD19967.582ENSOANG00000014297THUMPD110067.582Ornithorhynchus_anatinus
ENSG00000066654THUMPD19888.184ENSOCUG00000009895-9888.184Oryctolagus_cuniculus
ENSG00000066654THUMPD16280.455ENSOCUG00000025354-10080.455Oryctolagus_cuniculus
ENSG00000066654THUMPD18849.219ENSORLG00000027557thumpd19852.077Oryzias_latipes
ENSG00000066654THUMPD18848.438ENSORLG00020010206thumpd18456.981Oryzias_latipes_hni
ENSG00000066654THUMPD16761.277ENSORLG00015009581thumpd19054.930Oryzias_latipes_hsok
ENSG00000066654THUMPD18448.361ENSOMEG00000019361thumpd17857.915Oryzias_melastigma
ENSG00000066654THUMPD110088.418ENSOGAG00000026723THUMPD110088.418Otolemur_garnettii
ENSG00000066654THUMPD19988.235ENSOARG00000013107THUMPD19988.235Ovis_aries
ENSG00000066654THUMPD110099.433ENSPPAG00000033818-8099.433Pan_paniscus
ENSG00000066654THUMPD19676.401ENSPPAG00000001653-9682.524Pan_paniscus
ENSG00000066654THUMPD110089.665ENSPPRG00000014118-10089.665Panthera_pardus
ENSG00000066654THUMPD110088.827ENSPTIG00000013856-10088.827Panthera_tigris_altaica
ENSG00000066654THUMPD110099.150ENSPTRG00000007848THUMPD18099.150Pan_troglodytes
ENSG00000066654THUMPD19675.221ENSPTRG00000046073-10075.354Pan_troglodytes
ENSG00000066654THUMPD18780.968ENSPANG00000034881-9980.968Papio_anubis
ENSG00000066654THUMPD110098.017ENSPANG00000025507THUMPD110098.017Papio_anubis
ENSG00000066654THUMPD16769.362ENSPKIG00000014491thumpd17369.362Paramormyrops_kingsleyae
ENSG00000066654THUMPD17577.567ENSPSIG00000012430THUMPD19177.567Pelodiscus_sinensis
ENSG00000066654THUMPD18750.388ENSPMGG00000014479thumpd19158.647Periophthalmus_magnuspinnatus
ENSG00000066654THUMPD16663.830ENSPEMG00000002608-10064.255Peromyscus_maniculatus_bairdii
ENSG00000066654THUMPD15952.404ENSPMAG00000001389thumpd18556.425Petromyzon_marinus
ENSG00000066654THUMPD19381.752ENSPCIG00000029241THUMPD17274.521Phascolarctos_cinereus
ENSG00000066654THUMPD18653.355ENSPFOG00000012649thumpd19553.922Poecilia_formosa
ENSG00000066654THUMPD18653.205ENSPLAG00000000137thumpd19553.770Poecilia_latipinna
ENSG00000066654THUMPD18653.526ENSPMEG00000007750thumpd19554.098Poecilia_mexicana
ENSG00000066654THUMPD18350.820ENSPREG00000000144thumpd18859.316Poecilia_reticulata
ENSG00000066654THUMPD17897.826ENSPPYG00000007160-10097.826Pongo_abelii
ENSG00000066654THUMPD17880.851ENSPCAG00000001534THUMPD110080.851Procavia_capensis
ENSG00000066654THUMPD110091.525ENSPCOG00000024663THUMPD110091.525Propithecus_coquereli
ENSG00000066654THUMPD19387.407ENSPVAG00000005659-10080.278Pteropus_vampyrus
ENSG00000066654THUMPD16175.446ENSPVAG00000003286-9975.446Pteropus_vampyrus
ENSG00000066654THUMPD18446.457ENSPNYG00000007061thumpd17857.308Pundamilia_nyererei
ENSG00000066654THUMPD18855.205ENSPNAG00000024872thumpd19656.467Pygocentrus_nattereri
ENSG00000066654THUMPD16279.545ENSRNOG00000014946AABR07005588.110079.545Rattus_norvegicus
ENSG00000066654THUMPD18783.766ENSRBIG00000040136-10083.766Rhinopithecus_bieti
ENSG00000066654THUMPD110097.734ENSRBIG00000040752THUMPD110097.734Rhinopithecus_bieti
ENSG00000066654THUMPD18783.442ENSRROG00000045699-10083.442Rhinopithecus_roxellana
ENSG00000066654THUMPD110098.017ENSRROG00000042189THUMPD110098.017Rhinopithecus_roxellana
ENSG00000066654THUMPD110094.901ENSSBOG00000034246THUMPD110094.901Saimiri_boliviensis_boliviensis
ENSG00000066654THUMPD19383.704ENSSHAG00000003853THUMPD19974.044Sarcophilus_harrisii
ENSG00000066654THUMPD18252.069ENSSFOG00015007512thumpd19250.654Scleropages_formosus
ENSG00000066654THUMPD19051.250ENSSMAG00000000723thumpd19551.582Scophthalmus_maximus
ENSG00000066654THUMPD18750.799ENSSDUG00000014502thumpd19752.077Seriola_dumerili
ENSG00000066654THUMPD18751.118ENSSLDG00000007694thumpd19752.396Seriola_lalandi_dorsalis
ENSG00000066654THUMPD19764.756ENSSPUG00000005096THUMPD19965.616Sphenodon_punctatus
ENSG00000066654THUMPD18353.398ENSSPAG00000006993thumpd19753.548Stegastes_partitus
ENSG00000066654THUMPD110087.744ENSSSCG00000024748THUMPD110087.744Sus_scrofa
ENSG00000066654THUMPD17374.242ENSTGUG00000009247THUMPD19675.000Taeniopygia_guttata
ENSG00000066654THUMPD18754.221ENSTRUG00000015656thumpd19054.545Takifugu_rubripes
ENSG00000066654THUMPD18450.407ENSTNIG00000001584thumpd18459.533Tetraodon_nigroviridis
ENSG00000066654THUMPD110087.853ENSTBEG00000005252THUMPD18887.853Tupaia_belangeri
ENSG00000066654THUMPD110087.989ENSTTRG00000016435THUMPD110087.989Tursiops_truncatus
ENSG00000066654THUMPD16276.786ENSUAMG00000005779-10076.786Ursus_americanus
ENSG00000066654THUMPD110086.034ENSVPAG00000003422THUMPD110086.034Vicugna_pacos
ENSG00000066654THUMPD110088.515ENSVVUG00000023241THUMPD19988.515Vulpes_vulpes
ENSG00000066654THUMPD17461.154ENSXETG00000005539thumpd19060.150Xenopus_tropicalis
ENSG00000066654THUMPD18450.000ENSXMAG00000026052thumpd19752.412Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000154rRNA modification-TASProcess
GO:0003723RNA binding22658674.HDAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0005515protein binding25653167.IPIFunction
GO:0005654nucleoplasm-TASComponent
GO:0006400tRNA modification21873635.IBAProcess

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