EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000071894 (Gene tree)
Gene ID
29894
Gene Symbol
CPSF1
Alias
CPSF160
Full Name
cleavage and polyadenylation specific factor 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
16,172 bases
Position
chr8:144,393,229-144,409,400
Accession
2324
RBP type
canonical RBP
Summary
Cleavage and polyadenylation specificity factor (CPSF) is a multisubunit complex that plays a central role in 3-prime processing of pre-mRNAs. CPSF recognizes the AAUAAA signal in the pre-mRNA and interacts with other proteins to facilitate both RNA cleavage and poly(A) synthesis. CPSF1 is the largest subunit of the CPSF complex (Murthy and Manley, 1995 [PubMed 7590244]).[supplied by OMIM, Mar 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000478145CPSF_APF03178.152.7e-9111
ENSP00000484669CPSF_APF03178.152.7e-9111
ENSP00000478161CPSF_APF03178.156.2e-3912
ENSP00000478161CPSF_APF03178.156.2e-3922
ENSP00000483775CPSF_APF03178.152.1e-3311
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
31267064Alternative cleavage and polyadenylation in health and disease.Nat Rev Genet2019 Jul 2Gruber AJdoi: 10.1038/s41576-019-0145-z
9224719The 30-kD subunit of mammalian cleavage and polyadenylation specificity factor and its yeast homolog are RNA-binding zinc finger proteins.Genes Dev1997 Jul 1Barabino SM-
19573236Distinctive interactions of the Arabidopsis homolog of the 30 kD subunit of the cleavage and polyadenylation specificity factor (AtCPSF30) with other polyadenylation factor subunits.BMC Cell Biol2009 Jul 2Rao Sdoi: 10.1186/1471-2121-10-51.
25546057Integration of developmental and environmental signals via a polyadenylation factor in Arabidopsis.PLoS One2014 Dec 29Liu Mdoi: 10.1371/journal.pone.0115779
27071088Cleavage and polyadenylation specificity factor 30: An RNA-binding zinc-finger protein with an unexpected 2Fe-2S cluster.Proc Natl Acad Sci U S A2016 Apr 26Shimberg GDdoi: 10.1073/pnas.1517620113
29746237Iron-Sulfur Clusters in Zinc Finger Proteins.Methods Enzymol2018Shimberg GDdoi: 10.1016/bs.mie.2017.09.005
7852352Poly(A) tail length control is caused by termination of processive synthesis.J Biol Chem1995 Feb 10Wahle Edoi: 10.1074/jbc.270.6.2800.
9048562Probing the 3' UTR structure of U1A mRNA and footprinting analysis of its complex with U1A protein.Biochemistry1997 Feb 18Teunissen SW-
20926573Glycine 184 in nonstructural protein NS1 determines the virulence of influenza A virus strain PR8 without affecting the host interferon response.J Virol2010 DecSteidle Sdoi: 10.1128/JVI.00701-10
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000529288CPSF1-204588--- (aa)--
ENST00000532560CPSF1-208701--- (aa)--
ENST00000531480CPSF1-206789--- (aa)--
ENST00000622776CPSF1-2141029--- (aa)--
ENST00000527827CPSF1-202619--- (aa)--
ENST00000620219CPSF1-2134462XM_024447140ENSP000004781451443 (aa)XP_024302908Q10570
ENST00000532935CPSF1-210506-ENSP00000478161169 (aa)-A0A087WTV4
ENST00000531727CPSF1-207704-ENSP00000483775204 (aa)-A0A087X101
ENST00000527916CPSF1-203506--- (aa)--
ENST00000533492CPSF1-211510--- (aa)--
ENST00000532725CPSF1-209597--- (aa)--
ENST00000531042CPSF1-205580-ENSP00000435761148 (aa)-E9PIM1
ENST00000616140CPSF1-2124494XM_006716548ENSP000004846691443 (aa)XP_006716611Q10570
ENST00000526271CPSF1-201697--- (aa)--
Gene Model
Click here to download ENSG00000071894's gene model file
Pathways
Pathway IDPathway NameSource
hsa03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000071894's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000071894CPSF110080.556ENSAPOG00000019621cpsf110077.973Acanthochromis_polyacanthus
ENSG00000071894CPSF19794.857ENSAMEG00000005557CPSF110094.857Ailuropoda_melanoleuca
ENSG00000071894CPSF110080.093ENSACIG00000006112cpsf110077.870Amphilophus_citrinellus
ENSG00000071894CPSF110080.556ENSAOCG00000007120cpsf110079.187Amphiprion_ocellaris
ENSG00000071894CPSF110080.556ENSAPEG00000005755cpsf110079.574Amphiprion_percula
ENSG00000071894CPSF110080.093ENSATEG00000011097cpsf110077.815Anabas_testudineus
ENSG00000071894CPSF19983.511ENSACAG00000009655CPSF110081.561Anolis_carolinensis
ENSG00000071894CPSF110098.960ENSANAG00000036514CPSF110098.960Aotus_nancymaae
ENSG00000071894CPSF110079.167ENSACLG00000012231cpsf19978.536Astatotilapia_calliptera
ENSG00000071894CPSF110079.630ENSAMXG00000008485cpsf110073.964Astyanax_mexicanus
ENSG00000071894CPSF110094.426ENSBTAG00000008355CPSF110094.604Bos_taurus
ENSG00000071894CPSF110032.260WBGene00022301cpsf-110040.282Caenorhabditis_elegans
ENSG00000071894CPSF110098.753ENSCJAG00000021421CPSF110098.753Callithrix_jacchus
ENSG00000071894CPSF19796.286ENSCAFG00000001600CPSF110096.573Canis_familiaris
ENSG00000071894CPSF110096.542ENSCAFG00020020821CPSF110096.542Canis_lupus_dingo
ENSG00000071894CPSF110090.771ENSCHIG00000015833CPSF110090.771Capra_hircus
ENSG00000071894CPSF110097.852ENSTSYG00000028560CPSF19999.123Carlito_syrichta
ENSG00000071894CPSF19795.272ENSCAPG00000014921CPSF19995.272Cavia_aperea
ENSG00000071894CPSF110094.945ENSCPOG00000011448CPSF110094.945Cavia_porcellus
ENSG00000071894CPSF110098.822ENSCCAG00000037658CPSF110098.822Cebus_capucinus
ENSG00000071894CPSF110099.168ENSCATG00000037234CPSF110099.168Cercocebus_atys
ENSG00000071894CPSF110096.604ENSCLAG00000012166CPSF110096.604Chinchilla_lanigera
ENSG00000071894CPSF110099.099ENSCSAG00000008502CPSF110099.099Chlorocebus_sabaeus
ENSG00000071894CPSF19987.343ENSCPBG00000018910CPSF19687.413Chrysemys_picta_bellii
ENSG00000071894CPSF19648.387ENSCING00000000514-10048.315Ciona_intestinalis
ENSG00000071894CPSF19947.802ENSCSAVG00000002293-9849.765Ciona_savignyi
ENSG00000071894CPSF110098.039ENSCANG00000032760CPSF110098.039Colobus_angolensis_palliatus
ENSG00000071894CPSF110096.535ENSCGRG00001016344Cpsf110096.535Cricetulus_griseus_chok1gshd
ENSG00000071894CPSF110094.456ENSCGRG00000003118Cpsf110094.456Cricetulus_griseus_crigri
ENSG00000071894CPSF110077.455ENSCSEG00000013464cpsf110077.178Cynoglossus_semilaevis
ENSG00000071894CPSF110081.463ENSCVAG00000014059cpsf110081.463Cyprinodon_variegatus
ENSG00000071894CPSF110079.477ENSDARG00000034178cpsf110079.545Danio_rerio
ENSG00000071894CPSF15795.942ENSDNOG00000043654CPSF19495.942Dasypus_novemcinctus
ENSG00000071894CPSF19795.989ENSDORG00000006278Cpsf19995.989Dipodomys_ordii
ENSG00000071894CPSF19950.794FBgn0024698Cpsf16010045.528Drosophila_melanogaster
ENSG00000071894CPSF18890.299ENSETEG00000006022CPSF18397.315Echinops_telfairi
ENSG00000071894CPSF19968.617ENSEBUG00000006844-9774.541Eptatretus_burgeri
ENSG00000071894CPSF110097.165ENSEASG00005010774CPSF110097.165Equus_asinus_asinus
ENSG00000071894CPSF110097.165ENSECAG00000022209CPSF110097.165Equus_caballus
ENSG00000071894CPSF110094.467ENSEEUG00000000471CPSF110094.467Erinaceus_europaeus
ENSG00000071894CPSF110079.630ENSELUG00000012271cpsf110078.645Esox_lucius
ENSG00000071894CPSF110096.674ENSFDAG00000016060CPSF110096.674Fukomys_damarensis
ENSG00000071894CPSF110076.875ENSFHEG00000016801cpsf110076.738Fundulus_heteroclitus
ENSG00000071894CPSF110078.704ENSGMOG00000000796cpsf110077.793Gadus_morhua
ENSG00000071894CPSF19585.714ENSGAFG00000018890cpsf110085.714Gambusia_affinis
ENSG00000071894CPSF110078.748ENSGACG00000008703cpsf110078.611Gasterosteus_aculeatus
ENSG00000071894CPSF110083.621ENSGAGG00000004276CPSF19887.259Gopherus_agassizii
ENSG00000071894CPSF110063.592ENSGGOG00000040487-10070.833Gorilla_gorilla
ENSG00000071894CPSF110099.653ENSGGOG00000016185CPSF110099.653Gorilla_gorilla
ENSG00000071894CPSF110079.599ENSHBUG00000018900cpsf110079.322Haplochromis_burtoni
ENSG00000071894CPSF110096.535ENSHGLG00000016139CPSF110096.535Heterocephalus_glaber_female
ENSG00000071894CPSF110096.466ENSHGLG00100009750CPSF110096.466Heterocephalus_glaber_male
ENSG00000071894CPSF110077.778ENSHCOG00000018509cpsf110076.746Hippocampus_comes
ENSG00000071894CPSF110080.093ENSIPUG00000011259cpsf110076.701Ictalurus_punctatus
ENSG00000071894CPSF19796.717ENSSTOG00000009957CPSF19996.717Ictidomys_tridecemlineatus
ENSG00000071894CPSF110096.258ENSJJAG00000023002Cpsf110096.258Jaculus_jaculus
ENSG00000071894CPSF19185.893ENSKMAG00000001940cpsf19985.893Kryptolebias_marmoratus
ENSG00000071894CPSF110079.167ENSLBEG00000003601cpsf110077.590Labrus_bergylta
ENSG00000071894CPSF110082.407ENSLACG00000000233CPSF19281.490Latimeria_chalumnae
ENSG00000071894CPSF110081.651ENSLOCG00000008484cpsf110078.360Lepisosteus_oculatus
ENSG00000071894CPSF19795.497ENSLAFG00000022601CPSF110095.497Loxodonta_africana
ENSG00000071894CPSF110099.168ENSMFAG00000037013CPSF110099.168Macaca_fascicularis
ENSG00000071894CPSF110099.238ENSMMUG00000007380CPSF110099.238Macaca_mulatta
ENSG00000071894CPSF110098.529ENSMNEG00000043564CPSF110099.355Macaca_nemestrina
ENSG00000071894CPSF110099.168ENSMLEG00000043010CPSF110099.168Mandrillus_leucophaeus
ENSG00000071894CPSF110080.093ENSMAMG00000003803cpsf110078.176Mastacembelus_armatus
ENSG00000071894CPSF110079.167ENSMZEG00005001168cpsf110077.178Maylandia_zebra
ENSG00000071894CPSF110096.258ENSMAUG00000003601Cpsf110096.258Mesocricetus_auratus
ENSG00000071894CPSF110097.505ENSMICG00000015767CPSF110097.505Microcebus_murinus
ENSG00000071894CPSF110096.396ENSMOCG00000022758Cpsf110096.396Microtus_ochrogaster
ENSG00000071894CPSF110078.645ENSMMOG00000021245cpsf110078.645Mola_mola
ENSG00000071894CPSF110092.901ENSMODG00000010755CPSF110092.901Monodelphis_domestica
ENSG00000071894CPSF110079.167ENSMALG00000020545cpsf110077.673Monopterus_albus
ENSG00000071894CPSF110096.604MGP_CAROLIEiJ_G0019936Cpsf110096.604Mus_caroli
ENSG00000071894CPSF110096.535ENSMUSG00000034022Cpsf110096.535Mus_musculus
ENSG00000071894CPSF110096.466MGP_PahariEiJ_G0019946Cpsf110096.466Mus_pahari
ENSG00000071894CPSF110096.535MGP_SPRETEiJ_G0020839Cpsf110096.535Mus_spretus
ENSG00000071894CPSF19495.707ENSMPUG00000006419CPSF19395.707Mustela_putorius_furo
ENSG00000071894CPSF17897.484ENSMLUG00000000667-10096.667Myotis_lucifugus
ENSG00000071894CPSF110096.258ENSNGAG00000022460Cpsf110096.258Nannospalax_galili
ENSG00000071894CPSF110079.167ENSNBRG00000000813cpsf110074.845Neolamprologus_brichardi
ENSG00000071894CPSF110098.039ENSNLEG00000010633-10098.039Nomascus_leucogenys
ENSG00000071894CPSF18496.512ENSMEUG00000014922CPSF18596.512Notamacropus_eugenii
ENSG00000071894CPSF16196.939ENSOPRG00000004693-7196.939Ochotona_princeps
ENSG00000071894CPSF110096.674ENSODEG00000013995CPSF110096.674Octodon_degus
ENSG00000071894CPSF110079.806ENSONIG00000007676cpsf110079.599Oreochromis_niloticus
ENSG00000071894CPSF17791.538ENSOANG00000010716CPSF18891.429Ornithorhynchus_anatinus
ENSG00000071894CPSF110077.778ENSORLG00000013544cpsf19287.243Oryzias_latipes
ENSG00000071894CPSF110077.778ENSORLG00020021693cpsf19287.243Oryzias_latipes_hni
ENSG00000071894CPSF110077.778ENSORLG00015009979cpsf110077.362Oryzias_latipes_hsok
ENSG00000071894CPSF110077.778ENSOMEG00000011849cpsf110077.263Oryzias_melastigma
ENSG00000071894CPSF110097.436ENSOGAG00000000315CPSF110097.436Otolemur_garnettii
ENSG00000071894CPSF16993.333ENSOARG00000013594-8992.063Ovis_aries
ENSG00000071894CPSF110099.792ENSPPAG00000019280CPSF110099.792Pan_paniscus
ENSG00000071894CPSF19256.173ENSPPAG00000042686-7466.807Pan_paniscus
ENSG00000071894CPSF110099.510ENSPTRG00000051253-10099.510Pan_troglodytes
ENSG00000071894CPSF110061.765ENSPTRG00000052516-10069.444Pan_troglodytes
ENSG00000071894CPSF110099.792ENSPTRG00000049288-10099.792Pan_troglodytes
ENSG00000071894CPSF110099.020ENSPANG00000015005CPSF110099.211Papio_anubis
ENSG00000071894CPSF110081.481ENSPKIG00000002582cpsf110080.862Paramormyrops_kingsleyae
ENSG00000071894CPSF110075.926ENSPMGG00000022177-10084.259Periophthalmus_magnuspinnatus
ENSG00000071894CPSF110092.833ENSPCIG00000009035CPSF110092.833Phascolarctos_cinereus
ENSG00000071894CPSF110076.389ENSPFOG00000012870cpsf110076.387Poecilia_formosa
ENSG00000071894CPSF16978.102ENSPLAG00000022739-9588.655Poecilia_latipinna
ENSG00000071894CPSF16978.102ENSPMEG00000019534-9488.655Poecilia_mexicana
ENSG00000071894CPSF110076.133ENSPREG00000016307cpsf110076.065Poecilia_reticulata
ENSG00000071894CPSF110091.199ENSPPYG00000018973CPSF110091.199Pongo_abelii
ENSG00000071894CPSF19194.886ENSPCAG00000011541CPSF19494.886Procavia_capensis
ENSG00000071894CPSF110094.608ENSPCOG00000020001CPSF110094.608Propithecus_coquereli
ENSG00000071894CPSF19198.571ENSPVAG00000006761CPSF19198.571Pteropus_vampyrus
ENSG00000071894CPSF110079.167ENSPNYG00000004906cpsf110078.294Pundamilia_nyererei
ENSG00000071894CPSF19978.723ENSPNAG00000024395cpsf110075.362Pygocentrus_nattereri
ENSG00000071894CPSF110096.535ENSRNOG00000030705Cpsf110096.535Rattus_norvegicus
ENSG00000071894CPSF110099.168ENSRBIG00000044907CPSF110099.168Rhinopithecus_bieti
ENSG00000071894CPSF110099.099ENSRROG00000044861CPSF110099.099Rhinopithecus_roxellana
ENSG00000071894CPSF19798.853ENSSBOG00000027177CPSF110098.853Saimiri_boliviensis_boliviensis
ENSG00000071894CPSF110092.695ENSSHAG00000006500CPSF110092.695Sarcophilus_harrisii
ENSG00000071894CPSF110081.944ENSSFOG00015004606cpsf110081.323Scleropages_formosus
ENSG00000071894CPSF110080.556ENSSMAG00000020547cpsf110078.011Scophthalmus_maximus
ENSG00000071894CPSF110080.093ENSSDUG00000001100cpsf110079.006Seriola_dumerili
ENSG00000071894CPSF110080.093ENSSLDG00000003619cpsf110079.060Seriola_lalandi_dorsalis
ENSG00000071894CPSF18997.917ENSSARG00000003643CPSF19297.917Sorex_araneus
ENSG00000071894CPSF110089.216ENSSPUG00000014396CPSF110089.216Sphenodon_punctatus
ENSG00000071894CPSF110080.093ENSSPAG00000005349cpsf110078.093Stegastes_partitus
ENSG00000071894CPSF110095.920ENSSSCG00000005906CPSF110095.920Sus_scrofa
ENSG00000071894CPSF110076.852ENSTRUG00000013134cpsf19977.638Takifugu_rubripes
ENSG00000071894CPSF110078.832ENSTNIG00000014027cpsf110078.488Tetraodon_nigroviridis
ENSG00000071894CPSF17788.812ENSTBEG00000001756CPSF19188.812Tupaia_belangeri
ENSG00000071894CPSF110088.426ENSTTRG00000001937CPSF19096.718Tursiops_truncatus
ENSG00000071894CPSF19796.571ENSUAMG00000006476CPSF19896.571Ursus_americanus
ENSG00000071894CPSF19058.580ENSVPAG00000000157-5094.949Vicugna_pacos
ENSG00000071894CPSF110094.118ENSVVUG00000005940-10094.118Vulpes_vulpes
ENSG00000071894CPSF110077.402ENSXCOG00000003608cpsf110077.263Xiphophorus_couchianus
ENSG00000071894CPSF110076.881ENSXMAG00000005798cpsf110076.881Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0005515protein binding7590244.21102410.21822216.25416956.IPIFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005847mRNA cleavage and polyadenylation specificity factor complex21873635.IBAComponent
GO:0005847mRNA cleavage and polyadenylation specificity factor complex7590244.21102410.IDAComponent
GO:0006369termination of RNA polymerase II transcription-TASProcess
GO:0006378mRNA polyadenylation21873635.IBAProcess
GO:0006378mRNA polyadenylation7590244.IMPProcess
GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation-TASProcess
GO:0006406mRNA export from nucleus-TASProcess
GO:0019899enzyme binding7590244.IPIFunction
GO:0031124mRNA 3'-end processing-TASProcess
GO:0035925mRNA 3'-UTR AU-rich region binding7590244.IDAFunction
GO:0098789pre-mRNA cleavage required for polyadenylation7590244.ICProcess

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