EuRBPDB

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  • Basic Information
  • Cancer Related Information

  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000073578 (Gene tree)
Gene ID
6389
Gene Symbol
SDHA
Alias
FP|SDHF|SDH2
Full Name
succinate dehydrogenase complex flavoprotein subunit A
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
46,594 bases
Position
chr5:218,223-264,816
Accession
10680
RBP type
non-canonical RBP
Summary
This gene encodes a major catalytic subunit of succinate-ubiquinone oxidoreductase, a complex of the mitochondrial respiratory chain. The complex is composed of four nuclear-encoded subunits and is localized in the mitochondrial inner membrane. Mutations in this gene have been associated with a form of mitochondrial respiratory chain deficiency known as Leigh Syndrome. A pseudogene has been identified on chromosome 3q29. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jun 2014]
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000509564SDHA-211630-ENSP00000421911101 (aa)-H0Y8S2
ENST00000510361SDHA-2132148XM_024446143ENSP00000427703616 (aa)XP_024301911P31040
ENST00000507266SDHA-207432--- (aa)--
ENST00000509082SDHA-209434--- (aa)--
ENST00000512962SDHA-215935--- (aa)--
ENST00000514233SDHA-217558--- (aa)--
ENST00000505555SDHA-2062230--- (aa)--
ENST00000617470SDHA-2201952-ENSP00000484230519 (aa)-A0A087X1I3
ENST00000509632SDHA-212583-ENSP0000042507789 (aa)-D6REB7
ENST00000511810SDHA-2143001--- (aa)--
ENST00000515752SDHA-2181809--- (aa)--
ENST00000514027SDHA-2162209--- (aa)--
ENST00000504309SDHA-2042067XM_011514073ENSP00000426514583 (aa)XP_011512375D6RFM5
ENST00000503674SDHA-2032426--- (aa)--
ENST00000502379SDHA-202679--- (aa)--
ENST00000504824SDHA-2051430--- (aa)--
ENST00000515815SDHA-219704-ENSP00000422404126 (aa)-H0Y8X1
ENST00000264932SDHA-2012390XM_011514072ENSP00000264932664 (aa)XP_011512374P31040
ENST00000507522SDHA-208644--- (aa)--
ENST00000509420SDHA-210580--- (aa)--
Gene Model
Click here to download ENSG00000073578's gene model file
Pathways
Pathway IDPathway NameSource
hsa00020Citrate cycle (TCA cycle)KEGG
hsa00190Oxidative phosphorylationKEGG
hsa01100Metabolic pathwaysKEGG
hsa01200Carbon metabolismKEGG
hsa04714ThermogenesisKEGG
hsa04932Non-alcoholic fatty liver disease (NAFLD)KEGG
hsa05010Alzheimer diseaseKEGG
hsa05012Parkinson diseaseKEGG
hsa05016Huntington diseaseKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000073578's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000073578SDHA9377.311WBGene00015391sdha-19673.034Caenorhabditis_elegans
ENSG00000073578SDHA10076.879FBgn0261439SdhA10073.874Drosophila_melanogaster
ENSG00000073578SDHA10096.701ENSMUSG00000021577Sdha9996.667Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000104succinate dehydrogenase activity21873635.IBAFunction
GO:0000104succinate dehydrogenase activity7550341.IMPFunction
GO:0005515protein binding15961414.19628817.19688755.23747254.24606901.26496610.26749241.28330616.IPIFunction
GO:0005730nucleolus-IDAComponent
GO:0005739mitochondrion7550341.16826196.IDAComponent
GO:0005743mitochondrial inner membrane-ISSComponent
GO:0005743mitochondrial inner membrane-TASComponent
GO:0005749mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)21873635.IBAComponent
GO:0005749mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)-ISSComponent
GO:0005749mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)7550341.TASComponent
GO:0006099tricarboxylic acid cycle21873635.IBAProcess
GO:0006099tricarboxylic acid cycle-IEAProcess
GO:0006099tricarboxylic acid cycle7550341.TASProcess
GO:0006105succinate metabolic process7550341.IDAProcess
GO:0006121mitochondrial electron transport, succinate to ubiquinone21873635.IBAProcess
GO:0007399nervous system development16361598.IMPProcess
GO:0008177succinate dehydrogenase (ubiquinone) activity21873635.IBAFunction
GO:0008177succinate dehydrogenase (ubiquinone) activity24781757.IMPFunction
GO:0009055electron transfer activity21873635.IBAFunction
GO:0022904respiratory electron transport chain7550341.IDAProcess
GO:0045282plasma membrane succinate dehydrogenase complex21873635.IBAComponent
GO:0050660flavin adenine dinucleotide binding21873635.IBAFunction
GO:0055114oxidation-reduction process7550341.IDAProcess

Cancer associated literatures
PIDTitleArticle TimeAuthorDoi
28260082Cancer-associated fibroblasts enhance pancreatic cancer cell invasion by remodeling the metabolic conversion mechanism.Oncol Rep2017 AprShan Tdoi: 10.3892/or.2017.5479
26259135Succinate Dehydrogenase (SDH)-Deficient Pancreatic Neuroendocrine Tumor Expands the SDH-Related Tumor Spectrum.J Clin Endocrinol Metab2015 OctNiemeijer NDdoi: 10.1210/jc.2015-2689
19644226Regulation of succinate-ubiquinone reductase and fumarate reductase activities in human complex II by phosphorylation of its flavoprotein subunit.Proc Jpn Acad Ser B Phys Biol Sci2009Tomitsuka E-
23174333The role of complex II in disease.Biochim Biophys Acta2013 MayHoekstra ASdoi: 10.1016/j.bbabio.2012.11.005
22677546Inhibition of α-KG-dependent histone and DNA demethylases by fumarate and succinate that are accumulated in mutations of FH and SDH tumor suppressors.Genes Dev2012 Jun 15Xiao Mdoi: 10.1101/gad.191056.112
22955521Loss of expression of SDHA predicts SDHA mutations in gastrointestinal stromal tumors.Mod Pathol2013 FebWagner AJdoi: 10.1038/modpathol.2012.153
27587393The Assembly Factor SDHAF2 Is Dispensable for Flavination of the Catalytic Subunit of Mitochondrial Complex II in Breast Cancer Cells.J Biol Chem2016 Oct 7Bezawork-Geleta A-

Differential Expression

Expression in 33 cancers

Mutations
CancerChrPosition Mutation TypedbSNPProtein-change Allele FreqRBD
ACCchr5236468Missense_MutationnovelG434D0.42
BLCAchr5236487SilentNAE440E0.29
BLCAchr5224411Missense_MutationnovelG68C0.4
BLCAchr5224412Missense_MutationnovelG68V0.4
BLCAchr5235159Missense_MutationnovelE360D0.08
BLCAchr5235283Missense_MutationNAV402L0.25
BLCAchr5225551Missense_Mutationrs575617625A149T0.1
BLCAchr5225445Missense_MutationnovelN113K0.19
BLCAchr5240407Missense_MutationNAM494I0.25
BLCAchr52564223'UTRnovel0.24
BLCAchr5256404Frame_Shift_DelnovelI661Ffs*210.59
BLCAchr52564753'UTRnovel0.2
BLCAchr5228306Missense_MutationNAR248T0.34
BRCAchr5236519Missense_Mutationrs370690436R451H0.29
BRCAchr5230935Missense_Mutationrs367721665T277M0.13
BRCAchr5223563Missense_MutationnovelD49N0.05
BRCAchr5235370Intronnovel0.69
CESCchr5224387Missense_MutationNAH60Y0.12
CESCchr5251421Missense_MutationnovelE583K0.29
CESCchr5225911Missense_MutationNAR162T0.12
CESCchr5236487SilentNAE440E0.12
CESCchr5224460Missense_Mutationrs199615452G84E0.25
CESCchr5225548Missense_Mutationrs375576259A148T0.38
CESCchr5233810Intronnovel0.19
CESCchr5236564Missense_MutationNAA466V0.06
CESCchr5251704Intronnovel0.37
CESCchr5228238SilentNAL225L0.34
COADchr5233572Missense_Mutationrs200526913A331T0.46
COADchr5251013Missense_MutationnovelV525M0.14
COADchr5251004Missense_MutationNAH522N0.25
COADchr5235255Silentrs1041950G392G0.31
COADchr5251596Intronnovel0.27
COADchr5225938Missense_Mutationrs587782076R171H0.41
COADchr5251452Missense_MutationnovelA593V0.38
COADchr5224432Nonsense_Mutationrs781764920R75*0.33
COADchr5251031Missense_Mutationrs371056571V531M0.23
COADchr5230884Missense_MutationNAG260V0.28
COADchr5235214Missense_Mutationrs749309213R379C0.17
COADchr5224366Missense_MutationNAA53T0.39
COADchr5235349Intronnovel0.3
COADchr5251414Nonsense_MutationNAY580*0.5
COADchr5228269Missense_Mutationrs774160524A236T0.26
COADchr5233559Missense_MutationnovelF326L0.05
COADchr5251440Missense_Mutationrs763766162R589Q0.18
COADchr5228219Missense_Mutationrs756877901Y219C0.29
COADchr5235312Silentrs376530094G411G0.1
COADchr5235376Intronnovel0.07
ESCAchr52565673'UTRnovel0.06
ESCAchr5233645Missense_MutationnovelR355K0.6
GBMchr5251526Intronnovel0.07
GBMchr5235332Missense_MutationnovelK418R0.69
GBMchr5235333Missense_MutationnovelK418N0.68
GBMchr5225887Missense_MutationnovelE154A0.05
GBMchr5224467Missense_MutationnovelN86K0.28
GBMchr5223525Missense_MutationnovelT36N0.14
GBMchr5233603Missense_MutationnovelD341V0.1
GBMchr5235364Intronnovel0.19
GBMchr5235330Nonsense_MutationnovelY417*0.07
HNSCchr5251507Intronnovel0.4
HNSCchr5225997Missense_MutationnovelC191R0.14
HNSCchr5236335Intronnovel0.29
HNSCchr5251018SilentnovelF526F0.18
HNSCchr5233510Missense_Mutationrs760542965G310E0.38
KICHchr5235226Missense_MutationnovelI383F0.08
KIRCchr5233652Splice_Regionnovel0.17
KIRPchr5224471Missense_MutationNAA88T0.17
LAMLchr5224456Missense_MutationnovelA83P0.04
LGGchr5225416Splice_Regionnovel0.3
LGGchr5218356Translation_Start_Siters1061517M1?0.36
LGGchr5218356Translation_Start_Siters1061517M1?0.42
LGGchr5251524Intronnovel0.11
LIHCchr5223567Missense_MutationNAS50F0.24
LIHCchr5251388Missense_MutationNAM572L0.24
LIHCchr5240460Missense_MutationNAR512L0.43
LUADchr5225973Missense_MutationnovelG183S0.22
LUADchr5251421Missense_MutationNAE583Q0.04
LUADchr5251103Nonsense_MutationnovelG555*0.36
LUADchr5236433SilentNAL422L0.15
LUADchr5225497Missense_MutationnovelD131Y0.23
LUADchr5224428SilentnovelG73G0.04
LUADchr52182705'UTRnovel0.43
LUADchr52564823'UTRnovel0.21
LUADchr5251013Missense_MutationnovelV525M0.07
LUADchr5236466Silentrs144473374P433P0.25
LUADchr5235215Missense_MutationnovelR379L0.09
LUADchr5240392SilentNAG489G0.21
LUSCchr5251098Missense_MutationnovelD553V0.08
LUSCchr5240466Missense_MutationnovelS514I0.07
LUSCchr52183335'UTRnovel0.33
LUSCchr52182935'UTRnovel0.67
LUSCchr5251373Missense_MutationnovelE567Q0.13
LUSCchr5225526Missense_Mutationrs747232441H140Q0.08
LUSCchr5228159Intronnovel0.34
LUSCchr5225434Missense_MutationNAA110S0.21
LUSCchr5233673Intronnovel0.04
LUSCchr5225967Missense_MutationnovelG181R0.31
LUSCchr5228242Missense_MutationnovelE227Q0.08
LUSCchr52564373'UTRnovel0.09
LUSCchr5233728Intronnovel0.57
OVchr5236539SilentnovelL458L0.23
OVchr5223535SilentnovelG39G0.12
OVchr5230965Nonsense_MutationnovelC287*0.12
OVchr5230966Frame_Shift_InsnovelQ288Tfs*330.06
OVchr5233593Missense_MutationnovelA338P0.07
PAADchr5228219Frame_Shift_InsnovelA221Cfs*1000.08
PAADchr5235169Missense_Mutationrs372738835V364I0.11
PAADchr5251446Missense_Mutationrs367621815A591V0.19
PCPGchr5256383Missense_MutationnovelD653A0.06
PRADchr5228204Missense_Mutationrs755432673S214N0.39
PRADchr5233566Nonsense_MutationNAR329*0.42
READchr5251546Intronnovel0.18
READchr5225473Missense_MutationNAF123I0.47
READchr5228306Missense_MutationNAR248T0.25
READchr5228257Missense_MutationNAR232C0.21
READchr5235374Intronnovel0.41
SARCchr5251395Missense_MutationnovelC574S0.39
SARCchr5224427Missense_MutationnovelG73D0.04
SKCMchr5225520SilentNAA138A0.38
SKCMchr5225988Missense_Mutationrs553257776R188W0.47
SKCMchr5223541SilentnovelK41K0.84
SKCMchr5235291SilentNAP404P0.37
SKCMchr5236422Splice_Regionnovel0.25
SKCMchr5251004Missense_MutationNAH522Y0.05
SKCMchr5233653Splice_Regionnovel0.07
SKCMchr5225891Missense_MutationNAN155K0.14
SKCMchr52564233'UTRnovel0.53
SKCMchr5256335Missense_MutationnovelV637A0.05
SKCMchr5233646Splice_SitenovelX355_splice0.34
SKCMchr5225422Missense_MutationnovelG106R0.14
SKCMchr5225423Missense_MutationnovelG106E0.14
SKCMchr5230961Missense_MutationnovelP286S0.24
SKCMchr5233515Missense_MutationnovelR312C0.36
SKCMchr5226022Missense_MutationnovelS199L0.38
SKCMchr5233583Silentrs144252500A334A0.44
STADchr5240451Missense_Mutationrs397514541S509L0.23
STADchr5230882Silentrs140243793Y259Y0.26
STADchr5233554Missense_MutationNAR325G0.36
STADchr5230955Missense_MutationnovelG284C0.17
STADchr5233595Silentrs201341132A338A0.28
STADchr5240386Silentrs187540602N487N0.29
STADchr5235147SilentnovelG356G0.42
STADchr5235295Missense_MutationNAV406M0.17
STADchr5235386Intronnovel0.1
STADchr5235168Silentrs368488126H363H0.36
STADchr5230886Missense_Mutationrs143484394R261C0.25
STADchr5218371Missense_MutationnovelG6S0.15
STADchr5256376Missense_Mutationrs375396913E651K0.19
STADchr5230883Missense_MutationnovelG260R0.14
STADchr5251100Missense_Mutationrs9809219R554W0.35
STADchr5240446SilentNAR507R0.09
STADchr5225941Missense_MutationNAA172V0.07
UCECchr5228085Intronnovel0.32
UCECchr5235431Intronnovel0.39
UCECchr5233734Intronnovel0.18
UCECchr5235267Silentrs778667374T396T0.44
UCECchr5225535SilentNAT143T0.46
UCECchr5233530Missense_MutationnovelI317V0.37
UCECchr5235274Missense_MutationnovelP399S0.23
UCECchr5233796Intronnovel0.67
UCECchr5235376Intronnovel0.45
UCECchr5225903Silentrs771741537P159P0.2
UCECchr5228269Missense_Mutationrs774160524A236T0.13
UCECchr5235169Missense_Mutationrs372738835V364I0.24
UCECchr5235272Missense_MutationnovelE398G0.1
UCECchr5240360Missense_MutationNAD479N0.16
UCECchr5240451Missense_Mutationrs397514541S509L0.28
UCECchr5251096SilentNAF552F0.13
UCECchr5235297SilentnovelV406V0.25
UCECchr5225454Missense_MutationnovelE116D0.09
UCECchr5227924Intronnovel0.69
UCECchr5233787Intronnovel0.15
UCECchr5235438Intronnovel0.39
UCECchr5251013Missense_MutationnovelV525M0.2
UCECchr5230906Silentrs543630901T267T0.12
UCECchr5228093Intronnovel0.36
UCECchr5228217SilentnovelE218E0.32
UCECchr5251424Missense_MutationNAA584T0.18
UCECchr5225505Frame_Shift_DelnovelD135Tfs*80.47
UCECchr5225533Missense_MutationnovelT143A0.38
UCECchr5230970Missense_MutationnovelD289Y0.45
UCECchr5235401Intronnovel0.48
UCECchr5228258Missense_MutationNAR232H0.38
UCECchr5233811Intronnovel0.35
UCECchr5251486Intronnovel0.27
UCECchr5228178Splice_Regionnovel0.32
UCECchr5235408Intronnovel0.38
UCECchr5240387Missense_Mutationrs369100772A488T0.19
UCECchr5251097Missense_Mutationrs769882609D553N0.18
UCECchr5227976Intronnovel0.54
UCECchr5251649Intronnovel0.24
UCECchr5235163Missense_MutationnovelD362Y0.35
UCECchr5233618Missense_MutationnovelS346F0.39
UCECchr52565943'UTRnovel0.36
UCECchr5235255Silentrs1041950G392G0.19
UCECchr5236523Silentrs748496836L452L0.47
UCECchr5235152Missense_MutationnovelG358D0.09
UCECchr5256360SilentNAI645I0.29
UCECchr5225482Missense_MutationNAT126P0.23
UCECchr5228249Missense_MutationNAG229E0.14
UCECchr5233566Nonsense_MutationNAR329*0.48
UCECchr5228294Missense_MutationnovelI244T0.47
UCECchr5233489Missense_MutationNAA303V0.15
UCECchr5233516Missense_MutationnovelR312H0.45
UCECchr5233796Intronnovel0.29
UCECchr5233693Intronnovel0.35
UCECchr5225562Missense_MutationnovelE152D0.06
UCECchr5235431Intronnovel0.27
UCSchr5240416Missense_MutationnovelD497E0.06
UCSchr5251339Splice_RegionnovelG555G0.33

Copy Number Variations (CNVs)
CancerTypeFreq Q-value
BLCAAMP0.46327.3103e-07
BRCAAMP0.31480.12333
CESCAMP0.45082.0057e-06
ESCAAMP0.49460.00042289
HNSCAMP0.39856.6095e-05
KIRPDEL0.02080.09673
LGGDEL0.0780.0003285
LUSCAMP0.72263.3442e-18
OVAMP0.49053.6333e-11
SARCDEL0.10890.054392
SKCMDEL0.12810.011094
STADAMP0.24260.0018322
TGCTDEL0.56670.098913
THCADEL00.23456
UCECAMP0.14294.6983e-05

Survival Analysis
CancerP-value Q-value
KIRC0.00086

Kaplan-Meier Survival Analysis

STAD0.0088

Kaplan-Meier Survival Analysis

ACC0.0046

Kaplan-Meier Survival Analysis

HNSC0.033

Kaplan-Meier Survival Analysis

BRCA0.0064

Kaplan-Meier Survival Analysis

KIRP0.0001

Kaplan-Meier Survival Analysis

LAML0.0001

Kaplan-Meier Survival Analysis

KICH0.017

Kaplan-Meier Survival Analysis

LGG0.00015

Kaplan-Meier Survival Analysis

LUAD0.047

Kaplan-Meier Survival Analysis

UVM0.00015

Kaplan-Meier Survival Analysis

Drugs

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Input Cell Line :


Eesembl ID



Cell lines and drugs in GSE70138 or GSE92742


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