EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000075856 (Gene tree)
Gene ID
9733
Gene Symbol
SART3
Alias
KIAA0156|RP11-13G14|TIP110|p110
Full Name
spliceosome associated factor 3, U4/U6 recycling protein
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
39,187 bases
Position
chr12:108,522,214-108,561,400
Accession
16860
RBP type
canonical RBP
Summary
The protein encoded by this gene is an RNA-binding nuclear protein that is a tumor-rejection antigen. This antigen possesses tumor epitopes capable of inducing HLA-A24-restricted and tumor-specific cytotoxic T lymphocytes in cancer patients and may be useful for specific immunotherapy. This gene product is found to be an important cellular factor for HIV-1 gene expression and viral replication. It also associates transiently with U6 and U4/U6 snRNPs during the recycling phase of the spliceosome cycle. This encoded protein is thought to be involved in the regulation of mRNA splicing. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000414453Lsm_interactPF05391.111.6e-0611
ENSP00000228284Lsm_interactPF05391.111.7e-0611
ENSP00000414453RRM_1PF00076.222e-3212
ENSP00000414453RRM_1PF00076.222e-3222
ENSP00000228284RRM_1PF00076.222.1e-3212
ENSP00000228284RRM_1PF00076.222.1e-3222
ENSP00000447875RRM_1PF00076.224.4e-1811
ENSP00000449386RRM_1PF00076.229e-0711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNANascentRICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
11477570Binding of a SART3 tumor-rejection antigen to a pre-mRNA splicing factor RNPS1: a possible regulation of splicing by a complex formation.Int J Cancer2001 Sep 1Harada K-
12954622Intracellular localization of differentially regulated RNA-specific adenosine deaminase isoforms in inflammation.J Biol Chem2003 Nov 14Yang JH-
10761712Mouse homologue of the human SART3 gene encoding tumor-rejection antigen.Jpn J Cancer Res2000 FebHarada K-
15314151Human U4/U6 snRNP recycling factor p110: mutational analysis reveals the function of the tetratricopeptide repeat domain in recycling.Mol Cell Biol2004 SepMedenbach J-
22132941Tip110 maintains expression of pluripotent factors in and pluripotency of human embryonic stem cells.Stem Cells Dev2012 Apr 10Liu Ydoi: 10.1089/scd.2011.0512
21447833TIP110/p110nrb/SART3/p110 regulation of hematopoiesis through CMYC.Blood2011 May 26Liu Ydoi: 10.1182/blood-2010-12-325332
25342469Regulation of neuronal survival and morphology by the E3 ubiquitin ligase RNF157.Cell Death Differ2015 AprMatz Adoi: 10.1038/cdd.2014.163
29590477RNA-splicing factor SART3 regulates translesion DNA synthesis.Nucleic Acids Res2018 May 18Huang Mdoi: 10.1093/nar/gky220.
6256465Identification of tryptic peptides unique to a 110,000-molecular weight polyprotein encoded by the T-8 isolate of murine leukemia virus.J Exp Med1980 Dec 1van de Ven WJ-
9712912H1(0) RNA-binding proteins specifically expressed in the rat brain.J Biol Chem1998 Aug 28Scaturro M-
26203351Tip110 binding to U6 small nuclear RNA and its participation in pre-mRNA splicing.Cell Biosci2015 Jul 23Liu Ydoi: 10.1186/s13578-015-0032-z
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000431469SART3-2022834-ENSP00000414453927 (aa)-Q15020
ENST00000550619SART3-213548-ENSP00000449602111 (aa)-F8VVK9
ENST00000551416SART3-214559--- (aa)--
ENST00000619503SART3-216770--- (aa)--
ENST00000547528SART3-2081935-ENSP00000446577305 (aa)-F8W667
ENST00000548582SART3-211574--- (aa)--
ENST00000550322SART3-212582-ENSP00000447324156 (aa)-F8VZM2
ENST00000546815SART3-2062318-ENSP00000449386771 (aa)-F8VV04
ENST00000552221SART3-215544--- (aa)--
ENST00000546808SART3-205405--- (aa)--
ENST00000228284SART3-2014004XM_005269241ENSP00000228284963 (aa)XP_005269298Q15020
ENST00000547397SART3-207878-ENSP00000447875144 (aa)-H0YHU8
ENST00000548119SART3-210558--- (aa)--
ENST00000546611SART3-2031184-ENSP00000448554129 (aa)-Q15020
ENST00000548077SART3-209625--- (aa)--
ENST00000546728SART3-2043637-ENSP00000449743364 (aa)-Q15020
Gene Model
Click here to download ENSG00000075856's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000075856's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000075856SART35132.895ENSG00000169045HNRNPH17033.898
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000075856SART310067.361ENSAPOG00000007242sart39760.784Acanthochromis_polyacanthus
ENSG00000075856SART310098.077ENSAMEG00000016374SART310091.598Ailuropoda_melanoleuca
ENSG00000075856SART310070.139ENSACIG00000016452sart39762.975Amphilophus_citrinellus
ENSG00000075856SART310068.056ENSAOCG00000015094sart39862.336Amphiprion_ocellaris
ENSG00000075856SART310068.056ENSAPEG00000023696sart39861.900Amphiprion_percula
ENSG00000075856SART310068.750ENSATEG00000009882sart39464.685Anabas_testudineus
ENSG00000075856SART310080.000ENSAPLG00000006205SART310064.205Anas_platyrhynchos
ENSG00000075856SART310070.139ENSACAG00000001176SART39068.000Anolis_carolinensis
ENSG00000075856SART310098.198ENSANAG00000025967SART310097.300Aotus_nancymaae
ENSG00000075856SART310066.667ENSACLG00000025832sart39762.142Astatotilapia_calliptera
ENSG00000075856SART39570.093ENSAMXG00000019143sart39959.479Astyanax_mexicanus
ENSG00000075856SART310097.436ENSBTAG00000031846SART310088.601Bos_taurus
ENSG00000075856SART3100100.000ENSCJAG00000015330SART310097.195Callithrix_jacchus
ENSG00000075856SART310097.436ENSCAFG00000011352SART38991.494Canis_familiaris
ENSG00000075856SART310097.436ENSCAFG00020022271SART310091.494Canis_lupus_dingo
ENSG00000075856SART310095.495ENSCHIG00000021385SART310087.284Capra_hircus
ENSG00000075856SART310097.297ENSTSYG00000013923SART310090.664Carlito_syrichta
ENSG00000075856SART310098.198ENSCAPG00000013404SART39989.290Cavia_aperea
ENSG00000075856SART310098.198ENSCPOG00000010969SART310088.958Cavia_porcellus
ENSG00000075856SART3100100.000ENSCCAG00000023667SART310097.612Cebus_capucinus
ENSG00000075856SART3100100.000ENSCATG00000041537SART310098.490Cercocebus_atys
ENSG00000075856SART310098.198ENSCLAG00000011727SART310090.353Chinchilla_lanigera
ENSG00000075856SART3100100.000ENSCSAG00000002880SART310098.858Chlorocebus_sabaeus
ENSG00000075856SART310081.250ENSCPBG00000006699SART39773.643Chrysemys_picta_bellii
ENSG00000075856SART39555.660ENSCING00000009762-9839.444Ciona_intestinalis
ENSG00000075856SART3100100.000ENSCANG00000000411SART310098.598Colobus_angolensis_palliatus
ENSG00000075856SART310095.495ENSCGRG00001020554Sart310087.656Cricetulus_griseus_chok1gshd
ENSG00000075856SART310091.667ENSCGRG00000005968Sart310088.971Cricetulus_griseus_crigri
ENSG00000075856SART310066.667ENSCSEG00000011951sart37361.538Cynoglossus_semilaevis
ENSG00000075856SART310068.056ENSCVAG00000022898sart39463.728Cyprinodon_variegatus
ENSG00000075856SART39569.811ENSDARG00000008032sart39960.316Danio_rerio
ENSG00000075856SART310095.495ENSDNOG00000019498SART310088.144Dasypus_novemcinctus
ENSG00000075856SART39994.194ENSDORG00000014360Sart310081.977Dipodomys_ordii
ENSG00000075856SART36346.667FBgn0014024Rnp4F5138.971Drosophila_melanogaster
ENSG00000075856SART310086.806ENSETEG00000011292SART37893.548Echinops_telfairi
ENSG00000075856SART39940.000ENSEBUG00000005658sart39237.500Eptatretus_burgeri
ENSG00000075856SART310098.198ENSEASG00005014500SART310091.390Equus_asinus_asinus
ENSG00000075856SART310098.198ENSECAG00000000314SART310091.390Equus_caballus
ENSG00000075856SART310086.111ENSEEUG00000002954SART310078.778Erinaceus_europaeus
ENSG00000075856SART39571.698ENSELUG00000013025sart39562.376Esox_lucius
ENSG00000075856SART310098.198ENSFCAG00000014041SART310092.012Felis_catus
ENSG00000075856SART310077.931ENSFALG00000008894SART310073.583Ficedula_albicollis
ENSG00000075856SART310097.297ENSFDAG00000014878SART310089.616Fukomys_damarensis
ENSG00000075856SART39569.811ENSFHEG00000015715sart39462.126Fundulus_heteroclitus
ENSG00000075856SART39569.811ENSGMOG00000017859sart39860.312Gadus_morhua
ENSG00000075856SART310080.690ENSGALG00000039472SART39574.172Gallus_gallus
ENSG00000075856SART310064.583ENSGAFG00000018055sart39461.650Gambusia_affinis
ENSG00000075856SART39566.981ENSGACG00000008787sart39862.584Gasterosteus_aculeatus
ENSG00000075856SART310081.250ENSGAGG00000016519SART39972.110Gopherus_agassizii
ENSG00000075856SART3100100.000ENSGGOG00000011562SART310099.585Gorilla_gorilla
ENSG00000075856SART310067.361ENSHBUG00000005247sart39762.288Haplochromis_burtoni
ENSG00000075856SART310096.396ENSHGLG00000011579SART310089.304Heterocephalus_glaber_female
ENSG00000075856SART310096.396ENSHGLG00100013263SART310086.708Heterocephalus_glaber_male
ENSG00000075856SART39570.755ENSHCOG00000009693sart39755.776Hippocampus_comes
ENSG00000075856SART39569.159ENSIPUG00000021151sart39761.290Ictalurus_punctatus
ENSG00000075856SART310095.513ENSSTOG00000002376SART310089.223Ictidomys_tridecemlineatus
ENSG00000075856SART310091.892ENSJJAG00000021869Sart310087.410Jaculus_jaculus
ENSG00000075856SART310067.361ENSKMAG00000016864sart39464.071Kryptolebias_marmoratus
ENSG00000075856SART310065.517ENSLBEG00000001263sart39860.577Labrus_bergylta
ENSG00000075856SART39862.733ENSLACG00000007414SART39453.689Latimeria_chalumnae
ENSG00000075856SART310071.528ENSLOCG00000004710sart39165.532Lepisosteus_oculatus
ENSG00000075856SART310098.718ENSLAFG00000007167SART310091.675Loxodonta_africana
ENSG00000075856SART3100100.000ENSMFAG00000039887SART310098.598Macaca_fascicularis
ENSG00000075856SART3100100.000ENSMMUG00000017124SART310098.598Macaca_mulatta
ENSG00000075856SART3100100.000ENSMNEG00000011093SART310098.598Macaca_nemestrina
ENSG00000075856SART3100100.000ENSMLEG00000034251SART310098.706Mandrillus_leucophaeus
ENSG00000075856SART310070.833ENSMAMG00000016195sart39463.082Mastacembelus_armatus
ENSG00000075856SART310066.667ENSMZEG00005015248sart39762.142Maylandia_zebra
ENSG00000075856SART310078.621ENSMGAG00000005746SART310074.234Meleagris_gallopavo
ENSG00000075856SART310094.595ENSMAUG00000012434Sart310087.552Mesocricetus_auratus
ENSG00000075856SART310098.718ENSMICG00000013052SART310091.503Microcebus_murinus
ENSG00000075856SART310094.595ENSMOCG00000004078Sart310087.863Microtus_ochrogaster
ENSG00000075856SART39967.742ENSMMOG00000017629sart39464.318Mola_mola
ENSG00000075856SART310082.639ENSMODG00000002859SART39972.069Monodelphis_domestica
ENSG00000075856SART310068.750ENSMALG00000014549sart38664.005Monopterus_albus
ENSG00000075856SART39995.455MGP_CAROLIEiJ_G0027580Sart310087.137Mus_caroli
ENSG00000075856SART39995.455ENSMUSG00000018974Sart310087.033Mus_musculus
ENSG00000075856SART39995.455MGP_PahariEiJ_G0024162Sart310085.892Mus_pahari
ENSG00000075856SART39995.455MGP_SPRETEiJ_G0028578Sart310086.826Mus_spretus
ENSG00000075856SART310098.718ENSMPUG00000003402SART39191.805Mustela_putorius_furo
ENSG00000075856SART310095.513ENSMLUG00000007906SART310089.300Myotis_lucifugus
ENSG00000075856SART310096.396ENSNGAG00000014773Sart310088.693Nannospalax_galili
ENSG00000075856SART310067.361ENSNBRG00000008526sart39862.354Neolamprologus_brichardi
ENSG00000075856SART3100100.000ENSNLEG00000006767SART310099.029Nomascus_leucogenys
ENSG00000075856SART310083.448ENSMEUG00000006799SART310077.326Notamacropus_eugenii
ENSG00000075856SART310095.513ENSOPRG00000015817SART310086.570Ochotona_princeps
ENSG00000075856SART310097.297ENSODEG00000008547SART310088.681Octodon_degus
ENSG00000075856SART310066.667ENSONIG00000013413sart39762.527Oreochromis_niloticus
ENSG00000075856SART310081.944ENSOANG00000008794SART310074.659Ornithorhynchus_anatinus
ENSG00000075856SART39996.364ENSOCUG00000016285SART310090.466Oryctolagus_cuniculus
ENSG00000075856SART310068.750ENSORLG00000006895sart39463.444Oryzias_latipes
ENSG00000075856SART310068.750ENSORLG00020015473sart39960.774Oryzias_latipes_hni
ENSG00000075856SART310068.056ENSORLG00015003914sart39463.453Oryzias_latipes_hsok
ENSG00000075856SART310070.139ENSOMEG00000002174sart39464.198Oryzias_melastigma
ENSG00000075856SART310098.718ENSOGAG00000000932SART310091.538Otolemur_garnettii
ENSG00000075856SART39996.129ENSOARG00000018082SART310086.462Ovis_aries
ENSG00000075856SART3100100.000ENSPPAG00000041812SART310099.784Pan_paniscus
ENSG00000075856SART310098.198ENSPPRG00000001579SART310091.909Panthera_pardus
ENSG00000075856SART310098.198ENSPTIG00000021928SART310092.012Panthera_tigris_altaica
ENSG00000075856SART3100100.000ENSPTRG00000005404SART310099.784Pan_troglodytes
ENSG00000075856SART3100100.000ENSPANG00000024915SART310098.490Papio_anubis
ENSG00000075856SART39574.528ENSPKIG00000025203sart39761.842Paramormyrops_kingsleyae
ENSG00000075856SART310081.250ENSPSIG00000002594SART310074.044Pelodiscus_sinensis
ENSG00000075856SART39470.588ENSPMGG00000018729sart39659.611Periophthalmus_magnuspinnatus
ENSG00000075856SART310095.495ENSPEMG00000020811-9487.760Peromyscus_maniculatus_bairdii
ENSG00000075856SART310083.448ENSPCIG00000023889SART39178.290Phascolarctos_cinereus
ENSG00000075856SART310066.667ENSPFOG00000010290sart39463.374Poecilia_formosa
ENSG00000075856SART310066.667ENSPLAG00000002711sart39463.263Poecilia_latipinna
ENSG00000075856SART310065.972ENSPMEG00000000456sart39462.971Poecilia_mexicana
ENSG00000075856SART310065.972ENSPREG00000022086sart39462.721Poecilia_reticulata
ENSG00000075856SART310099.359ENSPPYG00000004919SART310099.169Pongo_abelii
ENSG00000075856SART310092.361ENSPCAG00000007505SART310078.926Procavia_capensis
ENSG00000075856SART310092.361ENSPCOG00000014016SART310083.212Propithecus_coquereli
ENSG00000075856SART310098.198ENSPVAG00000007442SART310087.020Pteropus_vampyrus
ENSG00000075856SART310067.361ENSPNYG00000015653sart39762.288Pundamilia_nyererei
ENSG00000075856SART39570.093ENSPNAG00000001851sart39760.768Pygocentrus_nattereri
ENSG00000075856SART310095.495ENSRNOG00000000702Sart310085.818Rattus_norvegicus
ENSG00000075856SART3100100.000ENSRBIG00000034143SART310098.754Rhinopithecus_bieti
ENSG00000075856SART3100100.000ENSRROG00000003629SART310098.442Rhinopithecus_roxellana
ENSG00000075856SART310097.222ENSSBOG00000033093SART310093.977Saimiri_boliviensis_boliviensis
ENSG00000075856SART310082.069ENSSHAG00000010864SART310077.866Sarcophilus_harrisii
ENSG00000075856SART310070.345ENSSFOG00015004012sart39464.056Scleropages_formosus
ENSG00000075856SART39568.868ENSSMAG00000014666sart39860.193Scophthalmus_maximus
ENSG00000075856SART310068.056ENSSDUG00000011664sart39461.716Seriola_dumerili
ENSG00000075856SART310067.361ENSSLDG00000024990sart38862.721Seriola_lalandi_dorsalis
ENSG00000075856SART310095.495ENSSARG00000005401SART38490.596Sorex_araneus
ENSG00000075856SART310077.778ENSSPUG00000009541SART39970.665Sphenodon_punctatus
ENSG00000075856SART310069.444ENSSPAG00000010658sart39463.657Stegastes_partitus
ENSG00000075856SART310098.718ENSSSCG00000009946SART39990.871Sus_scrofa
ENSG00000075856SART310077.778ENSTGUG00000006905SART39973.678Taeniopygia_guttata
ENSG00000075856SART39568.571ENSTRUG00000014173sart39461.702Takifugu_rubripes
ENSG00000075856SART310066.438ENSTNIG00000015867sart39962.374Tetraodon_nigroviridis
ENSG00000075856SART310096.396ENSTBEG00000008888SART39986.914Tupaia_belangeri
ENSG00000075856SART310098.718ENSTTRG00000003993SART310089.234Tursiops_truncatus
ENSG00000075856SART310098.077ENSUAMG00000023906SART310091.183Ursus_americanus
ENSG00000075856SART310098.077ENSUMAG00000005844SART310092.040Ursus_maritimus
ENSG00000075856SART37980.952ENSVPAG00000009997-6693.197Vicugna_pacos
ENSG00000075856SART310097.436ENSVVUG00000008216SART310091.598Vulpes_vulpes
ENSG00000075856SART39571.698ENSXETG00000017645sart310063.549Xenopus_tropicalis
ENSG00000075856SART39968.387ENSXCOG00000017212sart39464.553Xiphophorus_couchianus
ENSG00000075856SART310065.278ENSXMAG00000018160sart39462.752Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000244spliceosomal tri-snRNP complex assembly12032085.20595234.IDAProcess
GO:0000381regulation of alternative mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000387spliceosomal snRNP assembly14749385.15314151.IDAProcess
GO:0000398mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome15314151.IDAProcess
GO:0000902cell morphogenesis-IEAProcess
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005515protein binding11477570.15314151.17932509.20595234.25544563.IPIFunction
GO:0005634nucleus24526689.IDAComponent
GO:0005654nucleoplasm21873635.IBAComponent
GO:0005654nucleoplasm12578909.IDAComponent
GO:0005691U6atac snRNP14749385.IDAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0006334nucleosome assembly24526689.IDAProcess
GO:0008380RNA splicing21873635.IBAProcess
GO:0010468regulation of gene expression21447833.IDAProcess
GO:0015030Cajal body12578909.IDAComponent
GO:0016607nuclear speck-IEAComponent
GO:0017070U6 snRNA binding12032085.14749385.15314151.IDAFunction
GO:0030621U4 snRNA binding12032085.14749385.IDAFunction
GO:0030621U4 snRNA binding15314151.IDAFunction
GO:0030624U6atac snRNA binding14749385.IDAFunction
GO:0042393histone binding24526689.IDAFunction
GO:0046540U4/U6 x U5 tri-snRNP complex12032085.IDAComponent
GO:0048872homeostasis of number of cells-IEAProcess
GO:0061574ASAP complex21873635.IBAComponent
GO:0071001U4/U6 snRNP12032085.IDAComponent
GO:0071002U4atac/U6atac snRNP14749385.IDAComponent
GO:0071425hematopoietic stem cell proliferation-IEAProcess
GO:1903586positive regulation of histone deubiquitination24526689.IDAProcess
GO:1990381ubiquitin-specific protease binding20595234.24526689.IPIFunction

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