EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000076043 (Gene tree)
Gene ID
25996
Gene Symbol
REXO2
Alias
DKFZP566E144|SFN|CGI-114
Full Name
RNA exonuclease 2
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
10,894 bases
Position
chr11:114,439,386-114,450,279
Accession
17851
RBP type
canonical RBP
Summary
This gene encodes a 3'-to-5' exonuclease specific for small (primarily 5 nucleotides or less in length) single-stranded RNA and DNA oligomers. This protein may have a role in DNA repair, replication, and recombination, and in RNA processing and degradation. It may also be involved in resistance of human cells to UV-C-induced cell death through its role in the DNA repair process. [provided by RefSeq, Nov 2011]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000265881RNase_TPF00929.241.4e-3211
ENSP00000480535RNase_TPF00929.241.4e-3211
ENSP00000441844RNase_TPF00929.242.5e-2811
ENSP00000440665RNase_TPF00929.243.9e-2611
ENSP00000444421RNase_TPF00929.243.2e-2011
ENSP00000437460RNase_TPF00929.242.4e-0711
ENSP00000443842RNase_TPF00929.241.9e-0611
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
14610204Functional domain structure of human T-cell leukemia virus type 2 rex.J Virol2003 DecNarayan M-
11507189Phosphorylation of two serine residues regulates human T-cell leukemia virus type 2 Rex function.J Virol2001 SepNarayan M-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000543131REXO2-213539-ENSP0000044238067 (aa)-F5H7P1
ENST00000544827REXO2-218880-ENSP00000441844188 (aa)-H0YG54
ENST00000611665REXO2-2201158-ENSP00000480535237 (aa)-Q9Y3B8
ENST00000539119REXO2-205664-ENSP00000444421192 (aa)-H0YGR4
ENST00000544196REXO2-216452-ENSP0000043746085 (aa)-F5H6P8
ENST00000539754REXO2-208791-ENSP00000440665222 (aa)-F5GYG5
ENST00000544507REXO2-217641--- (aa)--
ENST00000540492REXO2-2101088--- (aa)--
ENST00000538791REXO2-2041081--- (aa)--
ENST00000539333REXO2-207651--- (aa)--
ENST00000543243REXO2-214552--- (aa)--
ENST00000538198REXO2-202449-ENSP0000044163990 (aa)-H0YG37
ENST00000539788REXO2-209626--- (aa)--
ENST00000546316REXO2-219726-ENSP0000043738067 (aa)-H0YF66
ENST00000542186REXO2-212463--- (aa)--
ENST00000544010REXO2-215848--- (aa)--
ENST00000541703REXO2-211475-ENSP00000442703121 (aa)-F5H784
ENST00000265881REXO2-2011161-ENSP00000265881237 (aa)-Q9Y3B8
ENST00000539275REXO2-206710-ENSP0000044384279 (aa)-Q9BTR4
ENST00000538403REXO2-203753--- (aa)--
Gene Model
Click here to download ENSG00000076043's gene model file
Pathways
Pathway IDPathway NameSource
hsa03008Ribosome biogenesis in eukaryotesKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000076043Myocardial Infarction8.0166258E-004-
ENSG00000076043Myocardial Infarction8.0378550E-004-
ENSG00000076043Myocardial Infarction3.8835472E-004-
ENSG00000076043Inflammatory Bowel Diseases2E-926192919
ENSG00000076043Colitis, Ulcerative5E-1723128233
ENSG00000076043Colitis, Ulcerative4E-2026192919
ENSG00000076043Immunoglobulins5E-723382691
ENSG00000076043Immunoglobulins9E-723382691
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000076043's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000076043REXO25976.577ENSAPOG00000011971smfn9676.577Acanthochromis_polyacanthus
ENSG00000076043REXO210098.404ENSAMEG00000013263REXO210097.046Ailuropoda_melanoleuca
ENSG00000076043REXO29680.663ENSACIG00000023553smfn9082.530Amphilophus_citrinellus
ENSG00000076043REXO27383.673ENSAOCG00000018799-7551.515Amphiprion_ocellaris
ENSG00000076043REXO26975.194ENSAOCG00000011565smfn7975.194Amphiprion_ocellaris
ENSG00000076043REXO29680.110ENSAPEG00000012435smfn7180.311Amphiprion_percula
ENSG00000076043REXO29980.108ENSATEG00000015385smfn8171.806Anabas_testudineus
ENSG00000076043REXO210089.362ENSAPLG00000005045REXO210083.902Anas_platyrhynchos
ENSG00000076043REXO29373.563ENSACAG00000011631REXO29269.417Anolis_carolinensis
ENSG00000076043REXO27772.222ENSANAG00000027457-9969.444Aotus_nancymaae
ENSG00000076043REXO210098.936ENSANAG00000020834REXO210098.312Aotus_nancymaae
ENSG00000076043REXO29978.723ENSACLG00000024566smfn9878.723Astatotilapia_calliptera
ENSG00000076043REXO210098.404ENSBTAG00000005843REXO210097.046Bos_taurus
ENSG00000076043REXO28947.024WBGene00007429C08B6.88856.522Caenorhabditis_elegans
ENSG00000076043REXO210098.507ENSCJAG00000012434REXO210097.046Callithrix_jacchus
ENSG00000076043REXO210092.537ENSCJAG00000044911-9377.011Callithrix_jacchus
ENSG00000076043REXO210097.340ENSCAFG00000013511REXO210097.046Canis_familiaris
ENSG00000076043REXO210098.404ENSCAFG00020002513REXO210097.890Canis_lupus_dingo
ENSG00000076043REXO210098.404ENSCHIG00000009264REXO210097.468Capra_hircus
ENSG00000076043REXO210087.234ENSTSYG00000027948-10085.128Carlito_syrichta
ENSG00000076043REXO210098.507ENSTSYG00000002237REXO210096.624Carlito_syrichta
ENSG00000076043REXO210098.404ENSCAPG00000006093REXO210098.404Cavia_aperea
ENSG00000076043REXO210098.936ENSCPOG00000010548REXO210097.468Cavia_porcellus
ENSG00000076043REXO210098.404ENSCCAG00000034979REXO210097.468Cebus_capucinus
ENSG00000076043REXO2100100.000ENSCATG00000015278REXO210099.156Cercocebus_atys
ENSG00000076043REXO210098.936ENSCLAG00000011195REXO210096.624Chinchilla_lanigera
ENSG00000076043REXO2100100.000ENSCSAG00000002754REXO210098.734Chlorocebus_sabaeus
ENSG00000076043REXO210097.340ENSCHOG00000000642-10094.515Choloepus_hoffmanni
ENSG00000076043REXO210092.405ENSCHOG00000013497REXO210096.429Choloepus_hoffmanni
ENSG00000076043REXO27788.276ENSCPBG00000009359REXO210088.276Chrysemys_picta_bellii
ENSG00000076043REXO28857.831ENSCING00000009858-8758.564Ciona_intestinalis
ENSG00000076043REXO2100100.000ENSCANG00000034756REXO210099.156Colobus_angolensis_palliatus
ENSG00000076043REXO210095.745ENSCGRG00001013673-10096.098Cricetulus_griseus_chok1gshd
ENSG00000076043REXO210095.213ENSCGRG00001010922-10095.610Cricetulus_griseus_chok1gshd
ENSG00000076043REXO210098.404ENSCGRG00001019814-10096.624Cricetulus_griseus_chok1gshd
ENSG00000076043REXO210098.404ENSCGRG00000006235Rexo210096.624Cricetulus_griseus_crigri
ENSG00000076043REXO29781.421ENSCSEG00000007214smfn7180.303Cynoglossus_semilaevis
ENSG00000076043REXO29779.235ENSCVAG00000012008smfn9979.235Cyprinodon_variegatus
ENSG00000076043REXO27385.714ENSCVAG00000012022-8156.250Cyprinodon_variegatus
ENSG00000076043REXO29979.570ENSDARG00000009806smfn7379.365Danio_rerio
ENSG00000076043REXO28599.375ENSDNOG00000046533REXO210096.172Dasypus_novemcinctus
ENSG00000076043REXO210076.064ENSDORG00000025142-9378.191Dipodomys_ordii
ENSG00000076043REXO210098.936ENSDORG00000011255Rexo210096.624Dipodomys_ordii
ENSG00000076043REXO28953.293FBgn0039115CG102149848.544Drosophila_melanogaster
ENSG00000076043REXO29177.193ENSEBUG00000013964REXO27270.233Eptatretus_burgeri
ENSG00000076043REXO210098.404ENSEASG00005006674REXO210096.203Equus_asinus_asinus
ENSG00000076043REXO210098.404ENSECAG00000005988REXO210096.203Equus_caballus
ENSG00000076043REXO29978.610ENSELUG00000020072smfn6979.293Esox_lucius
ENSG00000076043REXO210098.404ENSFCAG00000018632REXO210097.890Felis_catus
ENSG00000076043REXO210088.830ENSFALG00000010044REXO29488.360Ficedula_albicollis
ENSG00000076043REXO210098.936ENSFDAG00000011764REXO210097.046Fukomys_damarensis
ENSG00000076043REXO27379.592ENSFHEG00000022493-8752.727Fundulus_heteroclitus
ENSG00000076043REXO29279.191ENSGMOG00000006370smfn9480.663Gadus_morhua
ENSG00000076043REXO210090.957ENSGALG00000035980REXO210083.544Gallus_gallus
ENSG00000076043REXO29878.378ENSGAFG00000015349smfn7277.114Gambusia_affinis
ENSG00000076043REXO29576.536ENSGACG00000020096smfn8780.114Gasterosteus_aculeatus
ENSG00000076043REXO210090.426ENSGAGG00000021126REXO29784.889Gopherus_agassizii
ENSG00000076043REXO2100100.000ENSGGOG00000023267REXO210099.578Gorilla_gorilla
ENSG00000076043REXO29063.006ENSHBUG00000020097REXO25579.464Haplochromis_burtoni
ENSG00000076043REXO27387.755ENSHBUG00000015837-6688.889Haplochromis_burtoni
ENSG00000076043REXO210098.404ENSHGLG00000013556REXO210095.781Heterocephalus_glaber_female
ENSG00000076043REXO210098.936ENSHGLG00100005257REXO210096.203Heterocephalus_glaber_male
ENSG00000076043REXO29377.841ENSHCOG00000007122smfn9379.518Hippocampus_comes
ENSG00000076043REXO29881.522ENSIPUG00000020440rexo27678.537Ictalurus_punctatus
ENSG00000076043REXO210098.936ENSSTOG00000012465REXO210097.468Ictidomys_tridecemlineatus
ENSG00000076043REXO210084.810ENSJJAG00000022605-10074.775Jaculus_jaculus
ENSG00000076043REXO210098.936ENSJJAG00000013710-10098.312Jaculus_jaculus
ENSG00000076043REXO29779.235ENSKMAG00000016795smfn8070.536Kryptolebias_marmoratus
ENSG00000076043REXO210077.249ENSLBEG00000006021smfn10077.249Labrus_bergylta
ENSG00000076043REXO29775.135ENSLACG00000018623REXO29767.227Latimeria_chalumnae
ENSG00000076043REXO29983.871ENSLOCG00000002389smfn9881.068Lepisosteus_oculatus
ENSG00000076043REXO210098.404ENSLAFG00000012451REXO210093.671Loxodonta_africana
ENSG00000076043REXO2100100.000ENSMFAG00000041155REXO210099.156Macaca_fascicularis
ENSG00000076043REXO2100100.000ENSMMUG00000012269REXO210099.156Macaca_mulatta
ENSG00000076043REXO2100100.000ENSMNEG00000033379REXO210099.156Macaca_nemestrina
ENSG00000076043REXO2100100.000ENSMLEG00000036571REXO210099.156Mandrillus_leucophaeus
ENSG00000076043REXO29978.610ENSMAMG00000021209smfn7374.627Mastacembelus_armatus
ENSG00000076043REXO29679.558ENSMZEG00005020730REXO29169.820Maylandia_zebra
ENSG00000076043REXO29679.558ENSMZEG00005023224-8173.934Maylandia_zebra
ENSG00000076043REXO28688.957ENSMGAG00000003026REXO210088.957Meleagris_gallopavo
ENSG00000076043REXO210098.404ENSMAUG00000014576Rexo210096.624Mesocricetus_auratus
ENSG00000076043REXO210098.936ENSMICG00000010094REXO210097.468Microcebus_murinus
ENSG00000076043REXO210097.872ENSMOCG00000009016Rexo210096.203Microtus_ochrogaster
ENSG00000076043REXO29678.453ENSMMOG00000006430smfn7574.286Mola_mola
ENSG00000076043REXO210096.809ENSMODG00000013913REXO210091.983Monodelphis_domestica
ENSG00000076043REXO29976.344ENSMALG00000018130smfn5775.622Monopterus_albus
ENSG00000076043REXO210095.745MGP_CAROLIEiJ_G0032166Rexo29994.444Mus_caroli
ENSG00000076043REXO210096.277ENSMUSG00000032026Rexo210094.093Mus_musculus
ENSG00000076043REXO210096.277MGP_PahariEiJ_G0015034Rexo210094.093Mus_pahari
ENSG00000076043REXO210096.277MGP_SPRETEiJ_G0033305Rexo210094.093Mus_spretus
ENSG00000076043REXO210098.404ENSMPUG00000003947REXO210097.046Mustela_putorius_furo
ENSG00000076043REXO210097.340ENSMLUG00000009030REXO210096.203Myotis_lucifugus
ENSG00000076043REXO210098.404ENSNGAG00000008819Rexo210098.537Nannospalax_galili
ENSG00000076043REXO27389.796ENSNBRG00000015319-7866.019Neolamprologus_brichardi
ENSG00000076043REXO29779.670ENSNBRG00000006529smfn8882.530Neolamprologus_brichardi
ENSG00000076043REXO2100100.000ENSNLEG00000029745REXO210099.578Nomascus_leucogenys
ENSG00000076043REXO210096.277ENSMEUG00000011558REXO210094.521Notamacropus_eugenii
ENSG00000076043REXO28497.761ENSOPRG00000011076REXO210073.840Ochotona_princeps
ENSG00000076043REXO29588.000ENSODEG00000009698-9679.508Octodon_degus
ENSG00000076043REXO28676.398ENSODEG00000016046-9881.215Octodon_degus
ENSG00000076043REXO210098.936ENSODEG00000009750-10098.936Octodon_degus
ENSG00000076043REXO29681.215ENSONIG00000001954smfn8081.720Oreochromis_niloticus
ENSG00000076043REXO210094.149ENSOANG00000001754REXO210088.285Ornithorhynchus_anatinus
ENSG00000076043REXO210097.872ENSOCUG00000004274REXO29597.468Oryctolagus_cuniculus
ENSG00000076043REXO29882.162ENSORLG00000005119smfn6780.097Oryzias_latipes
ENSG00000076043REXO29882.162ENSORLG00020010121smfn6780.097Oryzias_latipes_hni
ENSG00000076043REXO29881.622ENSORLG00015015699smfn6679.612Oryzias_latipes_hsok
ENSG00000076043REXO29878.919ENSOMEG00000016878REXO27577.184Oryzias_melastigma
ENSG00000076043REXO27674.648ENSOMEG00000008940-9974.648Oryzias_melastigma
ENSG00000076043REXO210098.936ENSOGAG00000016860REXO210097.890Otolemur_garnettii
ENSG00000076043REXO210098.404ENSOARG00000001040REXO29896.651Ovis_aries
ENSG00000076043REXO2100100.000ENSPPAG00000039849REXO2100100.000Pan_paniscus
ENSG00000076043REXO210098.404ENSPPRG00000007255REXO210097.890Panthera_pardus
ENSG00000076043REXO210098.404ENSPTIG00000015578REXO210098.404Panthera_tigris_altaica
ENSG00000076043REXO2100100.000ENSPTRG00000004306REXO2100100.000Pan_troglodytes
ENSG00000076043REXO2100100.000ENSPANG00000010675REXO210099.156Papio_anubis
ENSG00000076043REXO210081.383ENSPKIG00000000911smfn7784.459Paramormyrops_kingsleyae
ENSG00000076043REXO210091.489ENSPSIG00000005151REXO28185.837Pelodiscus_sinensis
ENSG00000076043REXO210080.851ENSPMGG00000007442smfn10080.851Periophthalmus_magnuspinnatus
ENSG00000076043REXO29988.482ENSPEMG00000001421Rexo210081.435Peromyscus_maniculatus_bairdii
ENSG00000076043REXO26178.947ENSPMAG00000001022REXO29778.761Petromyzon_marinus
ENSG00000076043REXO210096.277ENSPCIG00000011227REXO26391.139Phascolarctos_cinereus
ENSG00000076043REXO29979.032ENSPFOG00000017861smfn9979.000Poecilia_formosa
ENSG00000076043REXO27981.081ENSPLAG00000007327REXO26875.843Poecilia_latipinna
ENSG00000076043REXO29979.032ENSPMEG00000017343smfn7278.607Poecilia_mexicana
ENSG00000076043REXO29978.495ENSPREG00000016438smfn7277.612Poecilia_reticulata
ENSG00000076043REXO2100100.000ENSPPYG00000003895REXO210099.578Pongo_abelii
ENSG00000076043REXO210097.872ENSPCAG00000005237REXO210094.937Procavia_capensis
ENSG00000076043REXO210091.139ENSPCOG00000027639REXO210096.410Propithecus_coquereli
ENSG00000076043REXO210086.192ENSPVAG00000005295REXO210086.192Pteropus_vampyrus
ENSG00000076043REXO29679.006ENSPNYG00000018401smfn8371.500Pundamilia_nyererei
ENSG00000076043REXO29883.152ENSPNAG00000005290smfn7978.140Pygocentrus_nattereri
ENSG00000076043REXO210096.809ENSRNOG00000018939Rexo210094.515Rattus_norvegicus
ENSG00000076043REXO2100100.000ENSRBIG00000037809REXO210099.156Rhinopithecus_bieti
ENSG00000076043REXO2100100.000ENSRROG00000038928REXO210099.156Rhinopithecus_roxellana
ENSG00000076043REXO28943.429YLR059CREX26744.134Saccharomyces_cerevisiae
ENSG00000076043REXO210098.936ENSSBOG00000028651REXO210097.890Saimiri_boliviensis_boliviensis
ENSG00000076043REXO29996.774ENSSHAG00000008008REXO210091.064Sarcophilus_harrisii
ENSG00000076043REXO29981.283ENSSFOG00015022414smfn9981.283Scleropages_formosus
ENSG00000076043REXO29877.297ENSSMAG00000003168smfn8569.528Scophthalmus_maximus
ENSG00000076043REXO29979.570ENSSDUG00000015624smfn7178.607Seriola_dumerili
ENSG00000076043REXO29980.645ENSSLDG00000014005smfn7179.310Seriola_lalandi_dorsalis
ENSG00000076043REXO273100.000ENSSARG00000014530REXO210098.425Sorex_araneus
ENSG00000076043REXO29478.333ENSSPUG00000006005REXO29478.333Sphenodon_punctatus
ENSG00000076043REXO29682.320ENSSPAG00000001530smfn9782.320Stegastes_partitus
ENSG00000076043REXO210098.404ENSSSCG00000015056REXO210096.624Sus_scrofa
ENSG00000076043REXO210087.766ENSTGUG00000000121REXO29981.013Taeniopygia_guttata
ENSG00000076043REXO29876.757ENSTRUG00000021529smfn6682.022Takifugu_rubripes
ENSG00000076043REXO29680.663ENSTNIG00000008588smfn9773.182Tetraodon_nigroviridis
ENSG00000076043REXO210098.936ENSTBEG00000017040REXO210098.312Tupaia_belangeri
ENSG00000076043REXO210097.872ENSTTRG00000014928REXO210095.359Tursiops_truncatus
ENSG00000076043REXO210098.507ENSUAMG00000019096REXO210097.436Ursus_americanus
ENSG00000076043REXO210098.404ENSUMAG00000003770REXO210097.468Ursus_maritimus
ENSG00000076043REXO210078.191ENSVPAG00000006301REXO210078.191Vicugna_pacos
ENSG00000076043REXO210098.404ENSVVUG00000025223REXO210097.468Vulpes_vulpes
ENSG00000076043REXO29787.912ENSXETG00000012648rexo28285.500Xenopus_tropicalis
ENSG00000076043REXO29977.419ENSXCOG00000018838smfn9577.419Xiphophorus_couchianus
ENSG00000076043REXO29976.882ENSXMAG00000021125smfn6476.119Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:00001753'-5'-exoribonuclease activity21873635.IBAFunction
GO:0003676nucleic acid binding-IEAFunction
GO:0005634nucleus-IDAComponent
GO:0005730nucleolus-IDAComponent
GO:0005739mitochondrion21873635.IBAComponent
GO:0005739mitochondrion-IDAComponent
GO:0005758mitochondrial intermembrane space-IEAComponent
GO:0005759mitochondrial matrix-IEAComponent
GO:0005925focal adhesion-IDAComponent
GO:0006139nucleobase-containing compound metabolic process10851236.IDAProcess
GO:00084083'-5' exonuclease activity10851236.IDAFunction
GO:0009117nucleotide metabolic process10851236.TASProcess
GO:0090503RNA phosphodiester bond hydrolysis, exonucleolytic-IEAProcess

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