EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Phenotypes

GWAS

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000076650 (Gene tree)
Gene ID: 55094
Gene Symbol: GPATCH1
Alias: ECGP|FLJ10206|FLJ38686|GPATC1
Full Name: G-patch domain containing 1
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Plus strand
Length: 49,663 bases
Position: chr19:33,080,880-33,130,542
Accession: 24658
RBP type: canonical RBP
Summary: (G-Patch Domain Containing 1) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include nucleic acid binding.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000170564	DUF1604	PF07713.13	2.2e-35	1	1
ENSP00000170564	G-patch	PF01585.23	2.1e-06	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000170564	GPATCH1-201	3492	XM_006723255	ENSP00000170564	931 (aa)	XP_006723318	Q9BRR8
ENST00000592165	GPATCH1-203	1584	-	ENSP00000467632	128 (aa)	-	K7EQ19
ENST00000590062	GPATCH1-202	513	-	-	- (aa)	-	-
ENST00000592262	GPATCH1-204	1978	-	-	- (aa)	-	-

Gene Model

Click here to download ENSG00000076650's gene model file

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000076650	Platelet Function Tests	3.7751000E-005	-
ENSG00000076650	Platelet Function Tests	6.4160000E-005	-
ENSG00000076650	Longevity	9E-7	27015805
ENSG00000076650	Bone Density	2E-13	24430505
ENSG00000076650	Fractures, Bone	4E-12	24430505
ENSG00000076650	Bone Density	7E-11	22504420
ENSG00000076650	Colorectal Neoplasms	4E-8	28295283

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000076650	rs10416218	19	33108221	T	Bone mineral density	22504420	[NR] unit decrease	0.04	EFO_0003923
ENSG00000076650	rs10410232	19	33122802	?	Parental longevity (combined parental age at death)	27015805	[0.055-0.127] unit increase	0.091064	EFO_0007796
ENSG00000076650	rs10416265	19	33114394	G	Bone properties (heel)	24430505	[0.05-0.08] unit increase	0.06	EFO_0004514
ENSG00000076650	rs10416265	19	33114394	G	Bone properties (heel)	24430505	[0.04-0.08] unit increase	0.06	EFO_0005654
ENSG00000076650	rs58636263	19	33094314		Bone ultrasound measurement (velocity of sound)	28472463	[0.05-0.09] unit increase	0.07	EFO_0004514
ENSG00000076650	rs58636263	19	33094314		Bone ultrasound measurement (velocity of sound)	28472463	[0.051-0.129] unit increase	0.09	EFO_0004514
ENSG00000076650	rs7252505	19	33084158	G	Colorectal cancer	28295283	[1.12-1.27]	1.19	EFO_0005842
ENSG00000076650	rs756893948	19	33094314	?	Heel bone mineral density	30048462	[0.061-0.071] unit decrease	0.0660318	EFO_0009270
ENSG00000076650	rs10416265	19	33114394	?	Heel bone mineral density	30048462			EFO_0009270
ENSG00000076650	rs17884930	19	33104484	?	Heel bone mineral density	30595370			EFO_0009270

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000076650's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000076650	GPATCH1	98	66.929	ENSAPOG00000009586	-	99	66.929	Acanthochromis_polyacanthus
ENSG00000076650	GPATCH1	100	89.496	ENSAMEG00000015575	GPATCH1	100	89.496	Ailuropoda_melanoleuca
ENSG00000076650	GPATCH1	91	70.690	ENSACIG00000001397	-	89	70.690	Amphilophus_citrinellus
ENSG00000076650	GPATCH1	81	72.115	ENSAOCG00000006668	gpatch1	77	70.166	Amphiprion_ocellaris
ENSG00000076650	GPATCH1	59	75.000	ENSAOCG00000009040	-	80	75.000	Amphiprion_ocellaris
ENSG00000076650	GPATCH1	81	73.077	ENSAPEG00000000026	gpatch1	90	51.386	Amphiprion_percula
ENSG00000076650	GPATCH1	81	73.077	ENSATEG00000014494	gpatch1	90	50.624	Anabas_testudineus
ENSG00000076650	GPATCH1	90	60.379	ENSAPLG00000007584	GPATCH1	96	60.894	Anas_platyrhynchos
ENSG00000076650	GPATCH1	100	95.918	ENSANAG00000027002	GPATCH1	100	95.918	Aotus_nancymaae
ENSG00000076650	GPATCH1	81	73.077	ENSACLG00000024740	gpatch1	81	53.168	Astatotilapia_calliptera
ENSG00000076650	GPATCH1	75	75.000	ENSAMXG00000020177	gpatch1	97	51.888	Astyanax_mexicanus
ENSG00000076650	GPATCH1	91	89.072	ENSBTAG00000000721	GPATCH1	100	88.853	Bos_taurus
ENSG00000076650	GPATCH1	70	52.747	WBGene00011109	R07E5.1	78	30.388	Caenorhabditis_elegans
ENSG00000076650	GPATCH1	100	95.489	ENSCJAG00000000684	GPATCH1	100	95.489	Callithrix_jacchus
ENSG00000076650	GPATCH1	100	89.507	ENSCAFG00000007457	GPATCH1	84	89.507	Canis_familiaris
ENSG00000076650	GPATCH1	94	89.257	ENSCAFG00020019731	GPATCH1	91	89.202	Canis_lupus_dingo
ENSG00000076650	GPATCH1	99	88.841	ENSCHIG00000019626	GPATCH1	100	88.841	Capra_hircus
ENSG00000076650	GPATCH1	97	78.901	ENSCAPG00000008827	GPATCH1	100	79.341	Cavia_aperea
ENSG00000076650	GPATCH1	100	81.303	ENSCPOG00000024477	GPATCH1	100	81.944	Cavia_porcellus
ENSG00000076650	GPATCH1	100	95.811	ENSCCAG00000024676	GPATCH1	100	95.811	Cebus_capucinus
ENSG00000076650	GPATCH1	100	99.219	ENSCATG00000043637	GPATCH1	100	99.219	Cercocebus_atys
ENSG00000076650	GPATCH1	96	82.103	ENSCLAG00000003395	-	92	83.212	Chinchilla_lanigera
ENSG00000076650	GPATCH1	100	95.172	ENSCSAG00000004743	GPATCH1	100	95.172	Chlorocebus_sabaeus
ENSG00000076650	GPATCH1	92	76.879	ENSCHOG00000012865	GPATCH1	89	80.311	Choloepus_hoffmanni
ENSG00000076650	GPATCH1	78	68.852	ENSCPBG00000000666	GPATCH1	97	67.141	Chrysemys_picta_bellii
ENSG00000076650	GPATCH1	73	55.319	ENSCING00000012518	-	95	33.295	Ciona_intestinalis
ENSG00000076650	GPATCH1	90	96.543	ENSCANG00000012540	GPATCH1	100	96.543	Colobus_angolensis_palliatus
ENSG00000076650	GPATCH1	97	80.790	ENSCGRG00001016736	Gpatch1	100	81.559	Cricetulus_griseus_chok1gshd
ENSG00000076650	GPATCH1	93	68.356	ENSCGRG00000005069	Gpatch1	91	67.453	Cricetulus_griseus_crigri
ENSG00000076650	GPATCH1	91	64.103	ENSCSEG00000019456	-	91	64.103	Cynoglossus_semilaevis
ENSG00000076650	GPATCH1	75	76.042	ENSDARG00000033418	gpatch1	92	51.168	Danio_rerio
ENSG00000076650	GPATCH1	91	87.089	ENSDNOG00000005291	GPATCH1	95	87.089	Dasypus_novemcinctus
ENSG00000076650	GPATCH1	94	81.350	ENSDORG00000012546	Gpatch1	95	81.221	Dipodomys_ordii
ENSG00000076650	GPATCH1	99	77.031	ENSETEG00000003626	GPATCH1	92	77.582	Echinops_telfairi
ENSG00000076650	GPATCH1	73	61.702	ENSEBUG00000011286	gpatch1	91	38.435	Eptatretus_burgeri
ENSG00000076650	GPATCH1	91	88.534	ENSEASG00005021162	GPATCH1	93	89.095	Equus_asinus_asinus
ENSG00000076650	GPATCH1	94	88.787	ENSECAG00000022743	GPATCH1	88	88.837	Equus_caballus
ENSG00000076650	GPATCH1	78	94.000	ENSEEUG00000012925	GPATCH1	78	79.902	Erinaceus_europaeus
ENSG00000076650	GPATCH1	81	69.231	ENSELUG00000018195	gpatch1	90	50.903	Esox_lucius
ENSG00000076650	GPATCH1	100	88.317	ENSFCAG00000014917	GPATCH1	100	88.103	Felis_catus
ENSG00000076650	GPATCH1	99	62.869	ENSFALG00000007821	GPATCH1	89	62.985	Ficedula_albicollis
ENSG00000076650	GPATCH1	96	82.870	ENSFDAG00000003871	GPATCH1	100	82.202	Fukomys_damarensis
ENSG00000076650	GPATCH1	91	66.379	ENSFHEG00000007459	-	98	66.379	Fundulus_heteroclitus
ENSG00000076650	GPATCH1	59	75.000	ENSGMOG00000003830	gpatch1	95	51.044	Gadus_morhua
ENSG00000076650	GPATCH1	93	63.481	ENSGALG00000004839	GPATCH1	93	63.518	Gallus_gallus
ENSG00000076650	GPATCH1	73	77.660	ENSGAFG00000006163	-	84	77.660	Gambusia_affinis
ENSG00000076650	GPATCH1	75	73.958	ENSGACG00000017544	gpatch1	94	48.840	Gasterosteus_aculeatus
ENSG00000076650	GPATCH1	100	65.576	ENSGAGG00000010067	GPATCH1	100	65.259	Gopherus_agassizii
ENSG00000076650	GPATCH1	98	98.033	ENSGGOG00000010862	GPATCH1	100	98.786	Gorilla_gorilla
ENSG00000076650	GPATCH1	81	74.038	ENSHBUG00000023462	gpatch1	90	50.855	Haplochromis_burtoni
ENSG00000076650	GPATCH1	100	84.706	ENSHGLG00000009334	GPATCH1	100	85.027	Heterocephalus_glaber_female
ENSG00000076650	GPATCH1	100	84.813	ENSHGLG00100018074	GPATCH1	100	85.134	Heterocephalus_glaber_male
ENSG00000076650	GPATCH1	77	66.990	ENSHCOG00000006876	-	82	66.990	Hippocampus_comes
ENSG00000076650	GPATCH1	81	69.231	ENSIPUG00000014977	gpatch1	90	53.160	Ictalurus_punctatus
ENSG00000076650	GPATCH1	100	87.901	ENSSTOG00000003720	GPATCH1	100	87.901	Ictidomys_tridecemlineatus
ENSG00000076650	GPATCH1	91	83.647	ENSJJAG00000023765	Gpatch1	100	83.244	Jaculus_jaculus
ENSG00000076650	GPATCH1	81	71.154	ENSKMAG00000017950	gpatch1	89	51.435	Kryptolebias_marmoratus
ENSG00000076650	GPATCH1	53	73.529	ENSLBEG00000028648	-	78	67.105	Labrus_bergylta
ENSG00000076650	GPATCH1	81	70.192	ENSLBEG00000026527	gpatch1	88	50.783	Labrus_bergylta
ENSG00000076650	GPATCH1	88	58.732	ENSLACG00000008130	GPATCH1	90	58.950	Latimeria_chalumnae
ENSG00000076650	GPATCH1	83	72.642	ENSLOCG00000001800	gpatch1	90	55.721	Lepisosteus_oculatus
ENSG00000076650	GPATCH1	99	88.152	ENSLAFG00000013589	GPATCH1	100	87.460	Loxodonta_africana
ENSG00000076650	GPATCH1	100	99.219	ENSMFAG00000034418	GPATCH1	100	99.219	Macaca_fascicularis
ENSG00000076650	GPATCH1	100	98.438	ENSMMUG00000011790	GPATCH1	100	98.438	Macaca_mulatta
ENSG00000076650	GPATCH1	100	97.100	ENSMNEG00000045084	GPATCH1	100	97.100	Macaca_nemestrina
ENSG00000076650	GPATCH1	100	86.574	ENSMLEG00000043840	GPATCH1	100	86.574	Mandrillus_leucophaeus
ENSG00000076650	GPATCH1	81	73.077	ENSMZEG00005001926	gpatch1	82	53.168	Maylandia_zebra
ENSG00000076650	GPATCH1	91	63.604	ENSMGAG00000005775	GPATCH1	90	62.736	Meleagris_gallopavo
ENSG00000076650	GPATCH1	90	80.212	ENSMICG00000004829	GPATCH1	93	80.919	Microcebus_murinus
ENSG00000076650	GPATCH1	99	81.418	ENSMOCG00000000174	Gpatch1	92	82.497	Microtus_ochrogaster
ENSG00000076650	GPATCH1	81	69.231	ENSMMOG00000002140	gpatch1	87	51.139	Mola_mola
ENSG00000076650	GPATCH1	100	70.476	ENSMODG00000012226	GPATCH1	100	70.476	Monodelphis_domestica
ENSG00000076650	GPATCH1	81	70.192	ENSMALG00000014386	gpatch1	90	50.115	Monopterus_albus
ENSG00000076650	GPATCH1	100	84.244	ENSMUSG00000063808	Gpatch1	100	94.898	Mus_musculus
ENSG00000076650	GPATCH1	100	83.850	MGP_PahariEiJ_G0012816	Gpatch1	100	95.918	Mus_pahari
ENSG00000076650	GPATCH1	100	83.940	MGP_SPRETEiJ_G0030681	Gpatch1	100	95.918	Mus_spretus
ENSG00000076650	GPATCH1	100	87.996	ENSMPUG00000007658	GPATCH1	100	87.996	Mustela_putorius_furo
ENSG00000076650	GPATCH1	100	88.197	ENSMLUG00000012161	GPATCH1	100	88.197	Myotis_lucifugus
ENSG00000076650	GPATCH1	100	84.120	ENSNGAG00000012455	Gpatch1	100	84.120	Nannospalax_galili
ENSG00000076650	GPATCH1	99	66.929	ENSNBRG00000003140	-	96	66.929	Neolamprologus_brichardi
ENSG00000076650	GPATCH1	100	100.000	ENSNLEG00000007659	GPATCH1	100	100.000	Nomascus_leucogenys
ENSG00000076650	GPATCH1	78	68.169	ENSMEUG00000015174	GPATCH1	78	68.169	Notamacropus_eugenii
ENSG00000076650	GPATCH1	99	82.246	ENSODEG00000007103	GPATCH1	99	82.655	Octodon_degus
ENSG00000076650	GPATCH1	83	72.642	ENSONIG00000003302	gpatch1	92	52.784	Oreochromis_niloticus
ENSG00000076650	GPATCH1	99	70.695	ENSOANG00000012732	GPATCH1	99	70.064	Ornithorhynchus_anatinus
ENSG00000076650	GPATCH1	100	87.460	ENSOCUG00000015905	GPATCH1	100	87.460	Oryctolagus_cuniculus
ENSG00000076650	GPATCH1	75	75.000	ENSORLG00000018706	gpatch1	88	49.941	Oryzias_latipes
ENSG00000076650	GPATCH1	81	70.192	ENSORLG00020014884	-	93	58.156	Oryzias_latipes_hni
ENSG00000076650	GPATCH1	81	70.192	ENSORLG00015012287	-	97	59.220	Oryzias_latipes_hsok
ENSG00000076650	GPATCH1	81	70.192	ENSOMEG00000022688	gpatch1	90	50.691	Oryzias_melastigma
ENSG00000076650	GPATCH1	85	88.763	ENSOGAG00000004016	GPATCH1	100	88.763	Otolemur_garnettii
ENSG00000076650	GPATCH1	90	88.375	ENSOARG00000004365	GPATCH1	99	88.108	Ovis_aries
ENSG00000076650	GPATCH1	100	99.225	ENSPPAG00000020990	GPATCH1	100	99.225	Pan_paniscus
ENSG00000076650	GPATCH1	100	88.853	ENSPPRG00000017245	GPATCH1	100	88.639	Panthera_pardus
ENSG00000076650	GPATCH1	100	89.389	ENSPTIG00000019649	GPATCH1	100	89.175	Panthera_tigris_altaica
ENSG00000076650	GPATCH1	100	100.000	ENSPTRG00000010803	GPATCH1	100	100.000	Pan_troglodytes
ENSG00000076650	GPATCH1	100	99.219	ENSPANG00000012374	GPATCH1	100	99.219	Papio_anubis
ENSG00000076650	GPATCH1	80	69.608	ENSPKIG00000020745	gpatch1	90	53.473	Paramormyrops_kingsleyae
ENSG00000076650	GPATCH1	78	84.000	ENSPSIG00000013433	GPATCH1	100	62.394	Pelodiscus_sinensis
ENSG00000076650	GPATCH1	87	67.857	ENSPMGG00000014320	-	84	67.857	Periophthalmus_magnuspinnatus
ENSG00000076650	GPATCH1	100	82.888	ENSPEMG00000000636	Gpatch1	100	82.246	Peromyscus_maniculatus_bairdii
ENSG00000076650	GPATCH1	83	86.792	ENSPCIG00000021003	GPATCH1	96	75.029	Phascolarctos_cinereus
ENSG00000076650	GPATCH1	75	79.167	ENSPLAG00000017953	-	100	79.592	Poecilia_latipinna
ENSG00000076650	GPATCH1	77	78.571	ENSPMEG00000017559	-	100	78.571	Poecilia_mexicana
ENSG00000076650	GPATCH1	85	72.477	ENSPREG00000008264	gpatch1	97	45.965	Poecilia_reticulata
ENSG00000076650	GPATCH1	100	95.166	ENSPPYG00000009824	GPATCH1	100	95.166	Pongo_abelii
ENSG00000076650	GPATCH1	83	79.196	ENSPCAG00000005931	GPATCH1	93	80.517	Procavia_capensis
ENSG00000076650	GPATCH1	93	82.184	ENSPCOG00000009674	GPATCH1	97	83.373	Propithecus_coquereli
ENSG00000076650	GPATCH1	83	90.566	ENSPVAG00000017767	GPATCH1	91	87.088	Pteropus_vampyrus
ENSG00000076650	GPATCH1	83	72.642	ENSPNYG00000018189	gpatch1	89	53.856	Pundamilia_nyererei
ENSG00000076650	GPATCH1	81	70.192	ENSPNAG00000013187	gpatch1	90	53.013	Pygocentrus_nattereri
ENSG00000076650	GPATCH1	100	80.707	ENSRNOG00000011584	Gpatch1	100	83.494	Rattus_norvegicus
ENSG00000076650	GPATCH1	100	89.056	ENSRBIG00000034723	GPATCH1	100	88.197	Rhinopithecus_bieti
ENSG00000076650	GPATCH1	100	98.438	ENSRROG00000024428	GPATCH1	100	98.438	Rhinopithecus_roxellana
ENSG00000076650	GPATCH1	100	94.629	ENSSBOG00000034650	GPATCH1	100	94.844	Saimiri_boliviensis_boliviensis
ENSG00000076650	GPATCH1	99	73.419	ENSSHAG00000016016	GPATCH1	99	72.669	Sarcophilus_harrisii
ENSG00000076650	GPATCH1	81	67.308	ENSSFOG00015011535	gpatch1	89	52.608	Scleropages_formosus
ENSG00000076650	GPATCH1	81	69.231	ENSSMAG00000002883	gpatch1	93	47.340	Scophthalmus_maximus
ENSG00000076650	GPATCH1	98	61.029	ENSSDUG00000007444	gpatch1	90	49.385	Seriola_dumerili
ENSG00000076650	GPATCH1	81	72.115	ENSSLDG00000002856	gpatch1	89	53.141	Seriola_lalandi_dorsalis
ENSG00000076650	GPATCH1	83	89.623	ENSSARG00000004108	GPATCH1	72	85.672	Sorex_araneus
ENSG00000076650	GPATCH1	83	73.148	ENSSPUG00000013348	-	98	73.541	Sphenodon_punctatus
ENSG00000076650	GPATCH1	91	71.795	ENSSPAG00000022432	-	98	71.795	Stegastes_partitus
ENSG00000076650	GPATCH1	91	88.118	ENSSSCG00000002865	GPATCH1	94	88.118	Sus_scrofa
ENSG00000076650	GPATCH1	99	64.293	ENSTGUG00000009401	GPATCH1	91	63.981	Taeniopygia_guttata
ENSG00000076650	GPATCH1	75	76.042	ENSTRUG00000025081	gpatch1	90	48.961	Takifugu_rubripes
ENSG00000076650	GPATCH1	75	76.042	ENSTRUG00000005785	-	90	48.961	Takifugu_rubripes
ENSG00000076650	GPATCH1	81	70.755	ENSTNIG00000002554	gpatch1	99	52.404	Tetraodon_nigroviridis
ENSG00000076650	GPATCH1	57	100.000	ENSTBEG00000007750	-	83	78.049	Tupaia_belangeri
ENSG00000076650	GPATCH1	91	80.188	ENSTTRG00000012221	GPATCH1	100	80.876	Tursiops_truncatus
ENSG00000076650	GPATCH1	97	87.903	ENSUAMG00000015638	-	92	87.903	Ursus_americanus
ENSG00000076650	GPATCH1	100	84.375	ENSUMAG00000014645	GPATCH1	100	88.558	Ursus_maritimus
ENSG00000076650	GPATCH1	80	96.000	ENSVPAG00000010313	GPATCH1	86	96.196	Vicugna_pacos
ENSG00000076650	GPATCH1	94	89.257	ENSVVUG00000016572	GPATCH1	91	89.202	Vulpes_vulpes
ENSG00000076650	GPATCH1	99	51.005	ENSXETG00000018276	gpatch1	100	51.531	Xenopus_tropicalis
ENSG00000076650	GPATCH1	96	65.600	ENSXCOG00000009851	-	88	65.600	Xiphophorus_couchianus
ENSG00000076650	GPATCH1	73	78.723	ENSXMAG00000018182	-	70	78.723	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	11991638.	IC	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	11991638.	IDA	Component