EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000080802 (Gene tree)
Gene ID
4850
Gene Symbol
CNOT4
Alias
CLONE243|NOT4H|NOT4
Full Name
CCR4-NOT transcription complex subunit 4
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
148,333 bases
Position
chr7:135,361,795-135,510,127
Accession
7880
RBP type
canonical RBP
Summary
The protein encoded by this gene is a subunit of the CCR4-NOT complex, a global transcriptional regulator. The encoded protein interacts with CNOT1 and has E3 ubiquitin ligase activity. Several transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Jul 2010]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000416532RRM_1PF00076.221.7e-0511
ENSP00000399108RRM_1PF00076.223e-0511
ENSP00000326731RRM_1PF00076.223e-0511
ENSP00000354673RRM_1PF00076.223.7e-0511
ENSP00000406777RRM_1PF00076.223.7e-0511
ENSP00000388491RRM_1PF00076.224.4e-0511
ENSP00000445508RRM_1PF00076.224.4e-0511
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
27342281The DDX6-4E-T interaction mediates translational repression and P-body assembly.Nucleic Acids Res2016 Jul 27Kamenska Adoi: 10.1093/nar/gkw565
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000473470CNOT4-209707--- (aa)--
ENST00000491203CNOT4-210538--- (aa)--
ENST00000315544CNOT4-2013783-ENSP00000326731575 (aa)-O95628
ENST00000541284CNOT4-2123563XM_017012235ENSP00000445508713 (aa)XP_016867724O95628
ENST00000356162CNOT4-2022594-ENSP00000348485175 (aa)-A0A0A0MRD2
ENST00000423368CNOT4-2053297-ENSP00000406777642 (aa)-O95628
ENST00000465721CNOT4-208556--- (aa)--
ENST00000451834CNOT4-2073507-ENSP00000388491710 (aa)-O95628
ENST00000361528CNOT4-2032215XM_024446772ENSP00000354673639 (aa)XP_024302540O95628
ENST00000428680CNOT4-2064642-ENSP00000399108572 (aa)-O95628
ENST00000414802CNOT4-2041687-ENSP00000416532433 (aa)-O95628
ENST00000498534CNOT4-211481--- (aa)--
Gene Model
Click here to download ENSG00000080802's gene model file
Pathways
Pathway IDPathway NameSource
hsa03018RNA degradationKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000080802Fetal Hemoglobin4.728e-005-
ENSG00000080802Platelet Function Tests2.7577200E-005-
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000080802rs38122817135397999TEducational attainment (MTAG)30038396[0.01-0.015] unit increase0.0126EFO_0004784
ENSG00000080802rs25517787135414900CHighest math class taken30038396[0.012-0.021] unit decrease0.0168EFO_0004875
ENSG00000080802rs126709017135366502AHighest math class taken (MTAG)30038396[0.01-0.017] unit increase0.0135EFO_0004875
ENSG00000080802rs100465747135485722?Peripheral arterial disease (traffic-related air pollution interaction)27082954[16.03-19.51]17.77EFO_0004265|EFO_0007908
ENSG00000080802rs126709017135366502ACognitive performance (MTAG)30038396[0.011-0.02] unit increase0.0151EFO_0008354
ENSG00000080802rs64675897135373802?Heel bone mineral density30048462[0.0089-0.0178] unit increase0.0133743EFO_0009270
ENSG00000080802rs38122817135397999TEducational attainment (years of education)30038396[0.0086-0.014] unit increase0.0113EFO_0004784
ENSG00000080802rs25517697135453583GHeel bone mineral density30598549[0.008-0.0158] unit decrease0.0119115EFO_0009270
ENSG00000080802rs38122817135397999?Educational attainment (years of education)30595370EFO_0004784
ENSG00000080802rs102558377135370989?Heel bone mineral density30595370EFO_0009270
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000080802's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000080802CNOT49789.299ENSAPOG00000016272cnot4a8290.566Acanthochromis_polyacanthus
ENSG00000080802CNOT49799.524ENSAMEG00000012081CNOT49199.535Ailuropoda_melanoleuca
ENSG00000080802CNOT410065.455ENSACIG00000003011cnot4a10060.471Amphilophus_citrinellus
ENSG00000080802CNOT49990.566ENSAOCG00000010792cnot4a9190.566Amphiprion_ocellaris
ENSG00000080802CNOT49990.566ENSAPEG00000004680cnot4a9190.566Amphiprion_percula
ENSG00000080802CNOT49990.189ENSATEG00000017580cnot4a9190.189Anabas_testudineus
ENSG00000080802CNOT410088.714ENSAPLG00000016441CNOT410088.714Anas_platyrhynchos
ENSG00000080802CNOT410088.583ENSACAG00000011154CNOT410088.583Anolis_carolinensis
ENSG00000080802CNOT410099.718ENSANAG00000032156CNOT410099.718Aotus_nancymaae
ENSG00000080802CNOT49990.566ENSACLG00000002514cnot4a9190.566Astatotilapia_calliptera
ENSG00000080802CNOT49993.962ENSAMXG00000011473cnot4b10072.173Astyanax_mexicanus
ENSG00000080802CNOT49783.529ENSAMXG00000001373cnot4a10072.171Astyanax_mexicanus
ENSG00000080802CNOT410099.221ENSBTAG00000017919CNOT410099.221Bos_taurus
ENSG00000080802CNOT410099.718ENSCJAG00000012532CNOT410099.718Callithrix_jacchus
ENSG00000080802CNOT410099.533ENSCAFG00000003223CNOT410099.533Canis_familiaris
ENSG00000080802CNOT410099.531ENSCAFG00020000093CNOT410099.531Canis_lupus_dingo
ENSG00000080802CNOT410099.301ENSCHIG00000010955CNOT410099.301Capra_hircus
ENSG00000080802CNOT410099.301ENSTSYG00000000893CNOT410099.301Carlito_syrichta
ENSG00000080802CNOT49999.020ENSCAPG00000006213CNOT410095.639Cavia_aperea
ENSG00000080802CNOT410098.442ENSCPOG00000011526CNOT410098.442Cavia_porcellus
ENSG00000080802CNOT410099.719ENSCCAG00000024414CNOT410099.719Cebus_capucinus
ENSG00000080802CNOT4100100.000ENSCATG00000022607CNOT4100100.000Cercocebus_atys
ENSG00000080802CNOT410098.905ENSCLAG00000001857CNOT410098.905Chinchilla_lanigera
ENSG00000080802CNOT4100100.000ENSCSAG00000009096CNOT4100100.000Chlorocebus_sabaeus
ENSG00000080802CNOT47099.465ENSCHOG00000010412CNOT46599.465Choloepus_hoffmanni
ENSG00000080802CNOT410096.073ENSCPBG00000004959CNOT410096.073Chrysemys_picta_bellii
ENSG00000080802CNOT46669.323ENSCING00000004364-9342.365Ciona_intestinalis
ENSG00000080802CNOT410099.860ENSCANG00000029319CNOT410099.860Colobus_angolensis_palliatus
ENSG00000080802CNOT410099.065ENSCGRG00001014651Cnot410099.065Cricetulus_griseus_chok1gshd
ENSG00000080802CNOT410099.065ENSCGRG00000005727Cnot410099.065Cricetulus_griseus_crigri
ENSG00000080802CNOT49789.299ENSCSEG00000015080cnot4a8490.566Cynoglossus_semilaevis
ENSG00000080802CNOT49990.566ENSCVAG00000009399cnot4a10074.540Cyprinodon_variegatus
ENSG00000080802CNOT49775.658ENSDARG00000007045cnot4a10069.870Danio_rerio
ENSG00000080802CNOT49773.975ENSDARG00000007639cnot4b10066.584Danio_rerio
ENSG00000080802CNOT410098.457ENSDNOG00000009409CNOT410098.457Dasypus_novemcinctus
ENSG00000080802CNOT410099.130ENSDORG00000012268Cnot410099.130Dipodomys_ordii
ENSG00000080802CNOT410092.987ENSETEG00000013407CNOT48995.536Echinops_telfairi
ENSG00000080802CNOT410098.910ENSEASG00005014430CNOT410098.910Equus_asinus_asinus
ENSG00000080802CNOT410098.910ENSECAG00000020262CNOT410098.910Equus_caballus
ENSG00000080802CNOT49990.637ENSELUG00000008742cnot4a9090.637Esox_lucius
ENSG00000080802CNOT410073.887ENSELUG00000011540cnot4b9772.113Esox_lucius
ENSG00000080802CNOT410099.531ENSFCAG00000011904CNOT410099.531Felis_catus
ENSG00000080802CNOT410089.108ENSFALG00000011194CNOT410089.108Ficedula_albicollis
ENSG00000080802CNOT410099.065ENSFDAG00000013525CNOT410099.065Fukomys_damarensis
ENSG00000080802CNOT410089.259ENSFHEG00000006608cnot4a10073.141Fundulus_heteroclitus
ENSG00000080802CNOT49765.314ENSGMOG00000001329cnot4a9762.339Gadus_morhua
ENSG00000080802CNOT410095.372ENSGALG00000011682CNOT410095.372Gallus_gallus
ENSG00000080802CNOT49782.506ENSGACG00000004276cnot4a9190.189Gasterosteus_aculeatus
ENSG00000080802CNOT410095.512ENSGAGG00000017331CNOT410095.512Gopherus_agassizii
ENSG00000080802CNOT49695.954ENSGGOG00000000142CNOT4100100.000Gorilla_gorilla
ENSG00000080802CNOT49990.566ENSHBUG00000000027cnot4a9190.566Haplochromis_burtoni
ENSG00000080802CNOT410099.221ENSHGLG00000011533CNOT410099.221Heterocephalus_glaber_female
ENSG00000080802CNOT410099.130ENSHGLG00100013058CNOT410099.130Heterocephalus_glaber_male
ENSG00000080802CNOT49889.434ENSHCOG00000015815cnot4a9189.434Hippocampus_comes
ENSG00000080802CNOT410091.481ENSIPUG00000006393cnot49191.481Ictalurus_punctatus
ENSG00000080802CNOT49781.647ENSIPUG00000016994cnot4b10070.982Ictalurus_punctatus
ENSG00000080802CNOT410099.301ENSSTOG00000007717CNOT410099.301Ictidomys_tridecemlineatus
ENSG00000080802CNOT49785.714ENSJJAG00000019991-10081.643Jaculus_jaculus
ENSG00000080802CNOT410099.061ENSJJAG00000016618Cnot410099.061Jaculus_jaculus
ENSG00000080802CNOT49789.299ENSKMAG00000004581cnot4a10073.282Kryptolebias_marmoratus
ENSG00000080802CNOT49990.943ENSLBEG00000009999cnot4a9190.943Labrus_bergylta
ENSG00000080802CNOT410083.694ENSLACG00000002647CNOT49983.694Latimeria_chalumnae
ENSG00000080802CNOT410093.382ENSLOCG00000016126cnot4a9293.382Lepisosteus_oculatus
ENSG00000080802CNOT410097.756ENSLAFG00000000709CNOT410097.756Loxodonta_africana
ENSG00000080802CNOT4100100.000ENSMFAG00000046349CNOT4100100.000Macaca_fascicularis
ENSG00000080802CNOT4100100.000ENSMMUG00000016181CNOT4100100.000Macaca_mulatta
ENSG00000080802CNOT4100100.000ENSMNEG00000042164CNOT4100100.000Macaca_nemestrina
ENSG00000080802CNOT4100100.000ENSMLEG00000032709CNOT4100100.000Mandrillus_leucophaeus
ENSG00000080802CNOT49990.566ENSMAMG00000023194cnot4a9190.566Mastacembelus_armatus
ENSG00000080802CNOT49990.566ENSMZEG00005007312cnot4a9190.566Maylandia_zebra
ENSG00000080802CNOT410088.583ENSMGAG00000011788CNOT410088.583Meleagris_gallopavo
ENSG00000080802CNOT410099.304ENSMAUG00000020415Cnot410099.304Mesocricetus_auratus
ENSG00000080802CNOT410099.719ENSMICG00000001667CNOT410099.719Microcebus_murinus
ENSG00000080802CNOT410098.910ENSMOCG00000020955Cnot410098.910Microtus_ochrogaster
ENSG00000080802CNOT49782.506ENSMMOG00000014565cnot4a9775.418Mola_mola
ENSG00000080802CNOT410097.042ENSMODG00000014068CNOT410097.042Monodelphis_domestica
ENSG00000080802CNOT49789.299ENSMALG00000011662cnot4a8090.566Monopterus_albus
ENSG00000080802CNOT410098.614MGP_CAROLIEiJ_G0028217Cnot410098.614Mus_caroli
ENSG00000080802CNOT410098.783ENSMUSG00000038784Cnot410098.783Mus_musculus
ENSG00000080802CNOT410098.783MGP_PahariEiJ_G0021974Cnot410098.783Mus_pahari
ENSG00000080802CNOT410098.435MGP_SPRETEiJ_G0029216Cnot410098.435Mus_spretus
ENSG00000080802CNOT410099.437ENSMPUG00000004089CNOT410099.437Mustela_putorius_furo
ENSG00000080802CNOT410099.221ENSMLUG00000008260CNOT410099.221Myotis_lucifugus
ENSG00000080802CNOT410099.304ENSNGAG00000015030Cnot410099.304Nannospalax_galili
ENSG00000080802CNOT49779.669ENSNBRG00000021144cnot4a10071.601Neolamprologus_brichardi
ENSG00000080802CNOT410099.719ENSNLEG00000013352CNOT410099.719Nomascus_leucogenys
ENSG00000080802CNOT48898.489ENSOPRG00000001023CNOT48298.489Ochotona_princeps
ENSG00000080802CNOT410098.442ENSODEG00000012975CNOT410098.442Octodon_degus
ENSG00000080802CNOT49990.566ENSONIG00000008656cnot4a9190.566Oreochromis_niloticus
ENSG00000080802CNOT410095.927ENSOANG00000005006CNOT410095.927Ornithorhynchus_anatinus
ENSG00000080802CNOT410099.577ENSOCUG00000013448CNOT410099.577Oryctolagus_cuniculus
ENSG00000080802CNOT49783.924ENSORLG00000003727cnot4a9190.943Oryzias_latipes
ENSG00000080802CNOT49783.924ENSORLG00020015684cnot4a9191.321Oryzias_latipes_hni
ENSG00000080802CNOT49783.924ENSORLG00015008470cnot4a9191.321Oryzias_latipes_hsok
ENSG00000080802CNOT49783.924ENSOMEG00000011084cnot4a9190.943Oryzias_melastigma
ENSG00000080802CNOT410099.579ENSOGAG00000015499CNOT410099.579Otolemur_garnettii
ENSG00000080802CNOT410098.878ENSOARG00000008803CNOT410098.878Ovis_aries
ENSG00000080802CNOT4100100.000ENSPPAG00000041937CNOT4100100.000Pan_paniscus
ENSG00000080802CNOT410099.533ENSPPRG00000023940CNOT410099.533Panthera_pardus
ENSG00000080802CNOT410099.476ENSPTIG00000016601CNOT410099.476Panthera_tigris_altaica
ENSG00000080802CNOT410099.844ENSPTRG00000019727CNOT410099.844Pan_troglodytes
ENSG00000080802CNOT410099.860ENSPANG00000017724CNOT410099.860Papio_anubis
ENSG00000080802CNOT49782.270ENSPKIG00000018137cnot4a10072.162Paramormyrops_kingsleyae
ENSG00000080802CNOT410087.942ENSPSIG00000011256CNOT410087.942Pelodiscus_sinensis
ENSG00000080802CNOT49782.033ENSPMGG00000005671cnot4a10073.222Periophthalmus_magnuspinnatus
ENSG00000080802CNOT410098.910ENSPEMG00000021566Cnot410098.910Peromyscus_maniculatus_bairdii
ENSG00000080802CNOT410097.027ENSPCIG00000029622CNOT49696.761Phascolarctos_cinereus
ENSG00000080802CNOT46388.321ENSPFOG00000002228cnot4a10059.658Poecilia_formosa
ENSG00000080802CNOT49782.979ENSPLAG00000001780cnot4a10073.059Poecilia_latipinna
ENSG00000080802CNOT49782.979ENSPMEG00000006852cnot4a10073.059Poecilia_mexicana
ENSG00000080802CNOT49782.506ENSPREG00000008171cnot4a10070.817Poecilia_reticulata
ENSG00000080802CNOT410099.718ENSPPYG00000018026CNOT410099.718Pongo_abelii
ENSG00000080802CNOT410099.533ENSPCOG00000019907CNOT410099.533Propithecus_coquereli
ENSG00000080802CNOT49799.286ENSPVAG00000004905CNOT49097.246Pteropus_vampyrus
ENSG00000080802CNOT49990.566ENSPNYG00000004276cnot4a9190.566Pundamilia_nyererei
ENSG00000080802CNOT410093.727ENSPNAG00000008679cnot4b10075.188Pygocentrus_nattereri
ENSG00000080802CNOT49991.513ENSPNAG00000020433cnot4a10072.131Pygocentrus_nattereri
ENSG00000080802CNOT410097.887ENSRNOG00000010795Cnot410097.887Rattus_norvegicus
ENSG00000080802CNOT4100100.000ENSRBIG00000043977CNOT4100100.000Rhinopithecus_bieti
ENSG00000080802CNOT410099.307ENSSBOG00000020808CNOT410099.307Saimiri_boliviensis_boliviensis
ENSG00000080802CNOT410096.901ENSSHAG00000013639CNOT410096.901Sarcophilus_harrisii
ENSG00000080802CNOT410090.074ENSSFOG00015002019cnot4a9190.074Scleropages_formosus
ENSG00000080802CNOT410091.912ENSSFOG00015017285CNOT49291.912Scleropages_formosus
ENSG00000080802CNOT49990.566ENSSMAG00000008614cnot4a9190.566Scophthalmus_maximus
ENSG00000080802CNOT49990.566ENSSDUG00000022635cnot4a9190.566Seriola_dumerili
ENSG00000080802CNOT49783.019ENSSDUG00000018585cnot4b10071.296Seriola_dumerili
ENSG00000080802CNOT49990.566ENSSLDG00000015770cnot4a9190.566Seriola_lalandi_dorsalis
ENSG00000080802CNOT410062.745ENSSLDG00000014347cnot4b10057.393Seriola_lalandi_dorsalis
ENSG00000080802CNOT410095.794ENSSPUG00000004677CNOT410095.794Sphenodon_punctatus
ENSG00000080802CNOT49990.566ENSSPAG00000012329cnot4a9190.566Stegastes_partitus
ENSG00000080802CNOT410099.377ENSSSCG00000021354CNOT410099.377Sus_scrofa
ENSG00000080802CNOT410089.239ENSTGUG00000009161CNOT410089.239Taeniopygia_guttata
ENSG00000080802CNOT410089.259ENSTRUG00000016861cnot4a9289.259Takifugu_rubripes
ENSG00000080802CNOT49779.669ENSTNIG00000016000cnot4a10070.054Tetraodon_nigroviridis
ENSG00000080802CNOT49796.905ENSTBEG00000002202CNOT48694.048Tupaia_belangeri
ENSG00000080802CNOT49799.286ENSTTRG00000005122CNOT49098.553Tursiops_truncatus
ENSG00000080802CNOT410099.533ENSUAMG00000026759CNOT410099.533Ursus_americanus
ENSG00000080802CNOT410099.478ENSUMAG00000015351CNOT410099.478Ursus_maritimus
ENSG00000080802CNOT410099.531ENSVVUG00000006200CNOT410099.531Vulpes_vulpes
ENSG00000080802CNOT410098.519ENSXETG00000010594cnot49298.519Xenopus_tropicalis
ENSG00000080802CNOT49779.773ENSXCOG00000020824cnot4a9871.669Xiphophorus_couchianus
ENSG00000080802CNOT49990.566ENSXMAG00000016984cnot4a9190.566Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000289nuclear-transcribed mRNA poly(A) tail shortening-TASProcess
GO:0003723RNA binding22681889.HDAFunction
GO:0004842ubiquitin-protein transferase activity21873635.IBAFunction
GO:0004842ubiquitin-protein transferase activity15001359.26575292.IDAFunction
GO:0005515protein binding15001359.26575292.IPIFunction
GO:0005634nucleus-IEAComponent
GO:0005829cytosol-TASComponent
GO:0006511ubiquitin-dependent protein catabolic process26575292.IDAProcess
GO:0006977DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest-TASProcess
GO:0016567protein ubiquitination21873635.IBAProcess
GO:0030014CCR4-NOT complex21873635.IBAComponent
GO:0030014CCR4-NOT complex19558367.IDAComponent
GO:0045652regulation of megakaryocyte differentiation26575292.IDAProcess
GO:0046872metal ion binding-IEAFunction
GO:0051865protein autoubiquitination15001359.IDAProcess

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