EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000083544 (Gene tree)
Gene ID
81550
Gene Symbol
TDRD3
Alias
FLJ21007
Full Name
tudor domain containing 3
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
177,423 bases
Position
chr13:60,396,457-60,573,879
Accession
20612
RBP type
canonical RBP
Summary
(Tudor Domain Containing 3) is a Protein Coding gene. Diseases associated with TDRD3 include Fragile X Syndrome. Among its related pathways are Chromatin Regulation / Acetylation and Translational Control. Gene Ontology (GO) annotations related to this gene include chromatin binding.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000477993TUDORPF00567.244.3e-1011
ENSP00000196169TUDORPF00567.244.3e-1011
ENSP00000367113TUDORPF00567.244.3e-1011
ENSP00000367126TUDORPF00567.244.3e-1011
ENSP00000498191TUDORPF00567.244.3e-1011
ENSP00000440190TUDORPF00567.245e-1011
ENSP00000440190SMNPF06003.125.2e-0811
ENSP00000196169SMNPF06003.126.3e-0811
ENSP00000367113SMNPF06003.126.3e-0811
ENSP00000367126SMNPF06003.126.3e-0811
ENSP00000498191SMNPF06003.126.3e-0811
ENSP00000477993SMNPF06003.126.4e-0811
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
18632687TDRD3, a novel Tudor domain-containing protein, localizes to cytoplasmic stress granules.Hum Mol Genet2008 Oct 1Goulet Idoi: 10.1093/hmg/ddn203
27582462DNA and RNA topoisomerase activities of Top3β are promoted by mediator protein Tudor domain-containing protein 3.Proc Natl Acad Sci U S A2016 Sep 20Siaw GEdoi: 10.1073/pnas.1605517113
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000621840TDRD3-2092497-ENSP00000477993650 (aa)-Q9H7E2
ENST00000196169TDRD3-2013019XM_005266560ENSP00000196169651 (aa)XP_005266617Q9H7E2
ENST00000648252TDRD3-2103388-ENSP00000498191651 (aa)-A0A024QZE0
ENST00000471710TDRD3-2063234--- (aa)--
ENST00000484389TDRD3-2071863-ENSP00000432703116 (aa)-F2Z2Y2
ENST00000377894TDRD3-2042484XM_024449416ENSP00000367126651 (aa)XP_024305184Q9H7E2
ENST00000535286TDRD3-2082579XM_005266556ENSP00000440190744 (aa)XP_005266613Q9H7E2
ENST00000377881TDRD3-2022532-ENSP00000367113651 (aa)-Q9H7E2
ENST00000377882TDRD3-203660-ENSP00000367114129 (aa)-B1AMN9
ENST00000463109TDRD3-205723--- (aa)--
Gene Model
Click here to download ENSG00000083544's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000083544Intra-Abdominal Fat3.5134738807879E-617903300
ENSG00000083544Intra-Abdominal Fat3.86651629084462E-617903300
ENSG00000083544Muscle, Skeletal4.6420000E-005-
ENSG00000083544Muscle, Skeletal7.8630000E-005-
ENSG00000083544Muscle, Skeletal7.0130000E-005-
ENSG00000083544Anatomy8.2715030E-005-
ENSG00000083544Menopause1E-1022267201
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000083544rs48862381360539605GMenopause (age at onset)26414677[0.14-0.22] years decrease0.18EFO_0004704
ENSG00000083544rs48862381360539605AMenopause (age at onset)22267201[0.12-0.22] years increase0.17EFO_0004704
ENSG00000083544rs73221601360487322?Age at menopause30595370EFO_0004704
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000083544's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000083544TDRD310069.767ENSAPOG00000016078tdrd39948.443Acanthochromis_polyacanthus
ENSG00000083544TDRD310098.450ENSAMEG00000000082TDRD310091.019Ailuropoda_melanoleuca
ENSG00000083544TDRD310072.093ENSACIG00000023900tdrd39950.063Amphilophus_citrinellus
ENSG00000083544TDRD310070.543ENSAOCG00000001410tdrd39949.191Amphiprion_ocellaris
ENSG00000083544TDRD310064.341ENSAPEG00000022810tdrd39946.770Amphiprion_percula
ENSG00000083544TDRD310072.093ENSATEG00000014570tdrd39949.561Anabas_testudineus
ENSG00000083544TDRD310086.822ENSAPLG00000014316TDRD310076.540Anas_platyrhynchos
ENSG00000083544TDRD310083.721ENSACAG00000004923TDRD310072.886Anolis_carolinensis
ENSG00000083544TDRD3100100.000ENSANAG00000030827-9894.384Aotus_nancymaae
ENSG00000083544TDRD38982.302ENSANAG00000027927-9878.479Aotus_nancymaae
ENSG00000083544TDRD310071.318ENSACLG00000022962tdrd39949.059Astatotilapia_calliptera
ENSG00000083544TDRD310068.217ENSAMXG00000006847tdrd39949.377Astyanax_mexicanus
ENSG00000083544TDRD310096.899ENSBTAG00000009308TDRD310091.532Bos_taurus
ENSG00000083544TDRD3100100.000ENSCJAG00000003853TDRD310095.161Callithrix_jacchus
ENSG00000083544TDRD310097.674ENSCAFG00000023746-9891.132Canis_familiaris
ENSG00000083544TDRD310097.674ENSCAFG00020018076-9992.055Canis_lupus_dingo
ENSG00000083544TDRD37683.838ENSCAFG00020015271-9483.838Canis_lupus_dingo
ENSG00000083544TDRD310096.124ENSCHIG00000020019TDRD310090.457Capra_hircus
ENSG00000083544TDRD310098.450ENSTSYG00000002254TDRD310092.690Carlito_syrichta
ENSG00000083544TDRD310078.154ENSCAPG00000012313TDRD39877.123Cavia_aperea
ENSG00000083544TDRD310083.087ENSCPOG00000010437TDRD310083.087Cavia_porcellus
ENSG00000083544TDRD310098.450ENSCCAG00000023831TDRD310095.565Cebus_capucinus
ENSG00000083544TDRD310099.225ENSCATG00000029498TDRD310097.581Cercocebus_atys
ENSG00000083544TDRD310097.674ENSCLAG00000002654TDRD310090.971Chinchilla_lanigera
ENSG00000083544TDRD3100100.000ENSCSAG00000017640TDRD310097.849Chlorocebus_sabaeus
ENSG00000083544TDRD310096.899ENSCHOG00000012825TDRD38696.167Choloepus_hoffmanni
ENSG00000083544TDRD310084.496ENSCPBG00000026646TDRD39976.521Chrysemys_picta_bellii
ENSG00000083544TDRD310099.225ENSCANG00000034303TDRD310097.385Colobus_angolensis_palliatus
ENSG00000083544TDRD310086.822ENSCGRG00001011297Tdrd310086.040Cricetulus_griseus_chok1gshd
ENSG00000083544TDRD310086.822ENSCGRG00000015535-10085.583Cricetulus_griseus_crigri
ENSG00000083544TDRD310068.217ENSCSEG00000000670tdrd39948.676Cynoglossus_semilaevis
ENSG00000083544TDRD310068.217ENSCVAG00000015641tdrd310048.331Cyprinodon_variegatus
ENSG00000083544TDRD310072.868ENSDARG00000025421tdrd39951.380Danio_rerio
ENSG00000083544TDRD310093.798ENSDNOG00000002011TDRD310088.441Dasypus_novemcinctus
ENSG00000083544TDRD310094.574ENSDORG00000008714Tdrd310089.247Dipodomys_ordii
ENSG00000083544TDRD310050.000ENSEBUG00000011812tdrd39136.675Eptatretus_burgeri
ENSG00000083544TDRD310096.899ENSEASG00005015575TDRD310092.070Equus_asinus_asinus
ENSG00000083544TDRD310097.674ENSECAG00000000550TDRD310092.339Equus_caballus
ENSG00000083544TDRD310081.413ENSEEUG00000002192TDRD310081.413Erinaceus_europaeus
ENSG00000083544TDRD310067.442ENSELUG00000000994tdrd36654.887Esox_lucius
ENSG00000083544TDRD310098.450ENSFCAG00000022126TDRD310091.935Felis_catus
ENSG00000083544TDRD310084.496ENSFALG00000007927TDRD39974.631Ficedula_albicollis
ENSG00000083544TDRD310098.450ENSFDAG00000011552TDRD310090.971Fukomys_damarensis
ENSG00000083544TDRD310068.217ENSFHEG00000009513tdrd39949.123Fundulus_heteroclitus
ENSG00000083544TDRD39869.841ENSGMOG00000005733tdrd38760.104Gadus_morhua
ENSG00000083544TDRD310082.171ENSGALG00000016936TDRD310075.871Gallus_gallus
ENSG00000083544TDRD310071.318ENSGAFG00000012013tdrd39948.263Gambusia_affinis
ENSG00000083544TDRD310067.442ENSGACG00000015264tdrd39948.715Gasterosteus_aculeatus
ENSG00000083544TDRD310084.496ENSGAGG00000003173TDRD310076.542Gopherus_agassizii
ENSG00000083544TDRD310099.693ENSGGOG00000025560TDRD310099.726Gorilla_gorilla
ENSG00000083544TDRD310071.318ENSHBUG00000007081tdrd39949.059Haplochromis_burtoni
ENSG00000083544TDRD310082.171ENSHGLG00000010652-9975.824Heterocephalus_glaber_female
ENSG00000083544TDRD39982.000ENSHGLG00000009668-10080.868Heterocephalus_glaber_female
ENSG00000083544TDRD310094.574ENSHGLG00000014119-10083.129Heterocephalus_glaber_female
ENSG00000083544TDRD310098.450ENSHGLG00000018707-10091.812Heterocephalus_glaber_female
ENSG00000083544TDRD310094.574ENSHGLG00100017738-10095.105Heterocephalus_glaber_male
ENSG00000083544TDRD310097.674ENSHGLG00100010966-10091.929Heterocephalus_glaber_male
ENSG00000083544TDRD310064.341ENSHCOG00000002157tdrd39945.956Hippocampus_comes
ENSG00000083544TDRD310069.767ENSIPUG00000012320tdrd39949.116Ictalurus_punctatus
ENSG00000083544TDRD310095.349ENSSTOG00000028945-10091.507Ictidomys_tridecemlineatus
ENSG00000083544TDRD310092.248ENSJJAG00000023665Tdrd39787.571Jaculus_jaculus
ENSG00000083544TDRD310070.543ENSKMAG00000021849tdrd39949.257Kryptolebias_marmoratus
ENSG00000083544TDRD310070.543ENSLBEG00000011777tdrd39948.670Labrus_bergylta
ENSG00000083544TDRD310076.744ENSLACG00000001412TDRD39962.416Latimeria_chalumnae
ENSG00000083544TDRD310072.093ENSLOCG00000004652tdrd310058.090Lepisosteus_oculatus
ENSG00000083544TDRD37888.142ENSLAFG00000002705TDRD310088.142Loxodonta_africana
ENSG00000083544TDRD310099.225ENSMFAG00000007606TDRD310097.446Macaca_fascicularis
ENSG00000083544TDRD310099.225ENSMMUG00000007169TDRD310097.446Macaca_mulatta
ENSG00000083544TDRD310099.225ENSMNEG00000002038TDRD310097.177Macaca_nemestrina
ENSG00000083544TDRD36296.543ENSMLEG00000039737TDRD310096.543Mandrillus_leucophaeus
ENSG00000083544TDRD310070.543ENSMAMG00000003998tdrd35659.862Mastacembelus_armatus
ENSG00000083544TDRD310071.318ENSMZEG00005004551tdrd39949.059Maylandia_zebra
ENSG00000083544TDRD310082.946ENSMGAG00000014961TDRD310074.597Meleagris_gallopavo
ENSG00000083544TDRD310088.372ENSMAUG00000012562Tdrd310087.919Mesocricetus_auratus
ENSG00000083544TDRD3100100.000ENSMICG00000009982TDRD310093.414Microcebus_murinus
ENSG00000083544TDRD310091.473ENSMOCG00000012962Tdrd310088.038Microtus_ochrogaster
ENSG00000083544TDRD310093.023ENSMODG00000006316TDRD310069.919Monodelphis_domestica
ENSG00000083544TDRD310071.318ENSMALG00000015327tdrd39948.742Monopterus_albus
ENSG00000083544TDRD310086.822MGP_CAROLIEiJ_G0019551Tdrd310086.156Mus_caroli
ENSG00000083544TDRD310087.597ENSMUSG00000022019Tdrd310084.946Mus_musculus
ENSG00000083544TDRD310086.559MGP_PahariEiJ_G0030569Tdrd310086.559Mus_pahari
ENSG00000083544TDRD310087.597MGP_SPRETEiJ_G0020448Tdrd310085.753Mus_spretus
ENSG00000083544TDRD310099.225ENSMPUG00000009630TDRD39189.984Mustela_putorius_furo
ENSG00000083544TDRD310094.574ENSMLUG00000000235TDRD39986.629Myotis_lucifugus
ENSG00000083544TDRD39992.188ENSNGAG00000004523Tdrd310089.247Nannospalax_galili
ENSG00000083544TDRD310071.318ENSNBRG00000018789tdrd39949.561Neolamprologus_brichardi
ENSG00000083544TDRD310099.225ENSNLEG00000015920TDRD310098.656Nomascus_leucogenys
ENSG00000083544TDRD310094.574ENSMEUG00000010114TDRD310069.632Notamacropus_eugenii
ENSG00000083544TDRD310081.874ENSOPRG00000007868TDRD310081.874Ochotona_princeps
ENSG00000083544TDRD310095.349ENSODEG00000000576-9987.248Octodon_degus
ENSG00000083544TDRD310082.946ENSODEG00000014559-10075.000Octodon_degus
ENSG00000083544TDRD310071.318ENSONIG00000003233tdrd39949.176Oreochromis_niloticus
ENSG00000083544TDRD35770.190ENSOANG00000011775-9970.190Ornithorhynchus_anatinus
ENSG00000083544TDRD310097.674ENSOCUG00000014261TDRD310093.011Oryctolagus_cuniculus
ENSG00000083544TDRD310072.868ENSORLG00000004502tdrd39949.875Oryzias_latipes
ENSG00000083544TDRD310072.093ENSORLG00020017271tdrd310048.271Oryzias_latipes_hni
ENSG00000083544TDRD310072.093ENSORLG00015015519tdrd39949.125Oryzias_latipes_hsok
ENSG00000083544TDRD310072.093ENSOMEG00000015668tdrd39949.440Oryzias_melastigma
ENSG00000083544TDRD310096.899ENSOGAG00000005898TDRD310092.070Otolemur_garnettii
ENSG00000083544TDRD310096.899ENSOARG00000006244TDRD39990.959Ovis_aries
ENSG00000083544TDRD3100100.000ENSPPAG00000010477TDRD310099.059Pan_paniscus
ENSG00000083544TDRD310098.450ENSPPRG00000008512TDRD310092.192Panthera_pardus
ENSG00000083544TDRD310098.450ENSPTIG00000002537TDRD310091.918Panthera_tigris_altaica
ENSG00000083544TDRD3100100.000ENSPTRG00000005918TDRD310099.448Pan_troglodytes
ENSG00000083544TDRD310099.225ENSPANG00000019138TDRD310097.446Papio_anubis
ENSG00000083544TDRD310070.543ENSPKIG00000008894tdrd39949.064Paramormyrops_kingsleyae
ENSG00000083544TDRD310084.496ENSPSIG00000013821TDRD310076.417Pelodiscus_sinensis
ENSG00000083544TDRD310069.767ENSPMGG00000015263tdrd39949.157Periophthalmus_magnuspinnatus
ENSG00000083544TDRD310090.698ENSPEMG00000004287Tdrd310087.366Peromyscus_maniculatus_bairdii
ENSG00000083544TDRD310093.798ENSPCIG00000011476-10082.440Phascolarctos_cinereus
ENSG00000083544TDRD310070.543ENSPFOG00000012450tdrd39949.299Poecilia_formosa
ENSG00000083544TDRD310070.543ENSPLAG00000016397tdrd39747.785Poecilia_latipinna
ENSG00000083544TDRD310070.543ENSPMEG00000019048tdrd39947.446Poecilia_mexicana
ENSG00000083544TDRD310071.318ENSPREG00000021145tdrd39948.379Poecilia_reticulata
ENSG00000083544TDRD310099.386ENSPPYG00000005401TDRD310099.059Pongo_abelii
ENSG00000083544TDRD310096.899ENSPCAG00000014959TDRD310082.949Procavia_capensis
ENSG00000083544TDRD38597.938ENSPCOG00000019937TDRD310097.938Propithecus_coquereli
ENSG00000083544TDRD310097.674ENSPVAG00000010549TDRD310090.015Pteropus_vampyrus
ENSG00000083544TDRD310071.318ENSPNYG00000001569tdrd39948.934Pundamilia_nyererei
ENSG00000083544TDRD310072.868ENSPNAG00000026219tdrd39948.753Pygocentrus_nattereri
ENSG00000083544TDRD310088.372ENSRNOG00000009034Tdrd310084.178Rattus_norvegicus
ENSG00000083544TDRD310099.225ENSRBIG00000031218TDRD39994.858Rhinopithecus_bieti
ENSG00000083544TDRD310099.225ENSRROG00000044516TDRD310097.389Rhinopithecus_roxellana
ENSG00000083544TDRD3100100.000ENSSBOG00000022790TDRD310096.164Saimiri_boliviensis_boliviensis
ENSG00000083544TDRD310077.557ENSSHAG00000011994TDRD310079.428Sarcophilus_harrisii
ENSG00000083544TDRD310072.093ENSSFOG00015005175tdrd39649.014Scleropages_formosus
ENSG00000083544TDRD310069.767ENSSMAG00000011677tdrd39946.920Scophthalmus_maximus
ENSG00000083544TDRD310072.093ENSSDUG00000004594tdrd39949.554Seriola_dumerili
ENSG00000083544TDRD310072.093ENSSLDG00000002918tdrd39847.013Seriola_lalandi_dorsalis
ENSG00000083544TDRD310095.349ENSSARG00000003028TDRD310087.577Sorex_araneus
ENSG00000083544TDRD310086.822ENSSPUG00000001191TDRD39877.626Sphenodon_punctatus
ENSG00000083544TDRD310072.093ENSSPAG00000005342tdrd39949.749Stegastes_partitus
ENSG00000083544TDRD310098.450ENSSSCG00000009449TDRD310091.812Sus_scrofa
ENSG00000083544TDRD310084.496ENSTGUG00000012476-10075.770Taeniopygia_guttata
ENSG00000083544TDRD310068.217ENSTRUG00000017194tdrd39546.676Takifugu_rubripes
ENSG00000083544TDRD310068.217ENSTNIG00000005230tdrd310049.089Tetraodon_nigroviridis
ENSG00000083544TDRD39985.538ENSTTRG00000010071TDRD39985.538Tursiops_truncatus
ENSG00000083544TDRD310099.225ENSUAMG00000017369-9892.647Ursus_americanus
ENSG00000083544TDRD310099.225ENSUMAG00000014526TDRD310092.473Ursus_maritimus
ENSG00000083544TDRD310096.124ENSVPAG00000011763TDRD310091.705Vicugna_pacos
ENSG00000083544TDRD310097.674ENSVVUG00000029140TDRD39791.908Vulpes_vulpes
ENSG00000083544TDRD310071.318ENSXCOG00000001875tdrd39748.939Xiphophorus_couchianus
ENSG00000083544TDRD310071.318ENSXMAG00000005103tdrd39948.878Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003682chromatin binding21172665.IDAFunction
GO:0003713transcription coactivator activity21172665.IDAFunction
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005515protein binding26700805.IPIFunction
GO:0005634nucleus21172665.IDAComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005794Golgi apparatus-IDAComponent
GO:0005829cytosol-IDAComponent
GO:0006325chromatin organization-IEAProcess
GO:0035064methylated histone binding21172665.IDAFunction
GO:0035145exon-exon junction complex20930030.IDAComponent
GO:1903508positive regulation of nucleic acid-templated transcription-IEAProcess

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