EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000083896 (Gene tree)
Gene ID
91746
Gene Symbol
YTHDC1
Alias
YT521|KIAA1966|YT521-B
Full Name
YTH domain containing 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
39,720 bases
Position
chr4:68,310,387-68,350,106
Accession
30626
RBP type
canonical RBP
Summary
(YTH Domain Containing 1) is a Protein Coding gene. Among its related pathways are Chromatin Regulation / Acetylation. Gene Ontology (GO) annotations related to this gene include N6-methyladenosine-containing RNA binding. An important paralog of this gene is YTHDF1.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000347888YTHPF04146.153.8e-3911
ENSP00000339245YTHPF04146.154e-3911
ENSP00000463982YTHPF04146.154e-3911
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
26876937Nuclear m(6)A Reader YTHDC1 Regulates mRNA Splicing.Mol Cell2016 Feb 18Xiao Wdoi: 10.1016/j.molcel.2016.01.012
28984244YTHDC1 mediates nuclear export of N6-methyladenosine methylated mRNAs.Elife2017 Oct 6Roundtree IAdoi: 10.7554/eLife.31311.
25242552Structural basis for selective binding of m6A RNA by the YTHDC1 YTH domain.Nat Chem Biol2014 NovXu Cdoi: 10.1038/nchembio.1654
27179969N (6)-Methyladenosine (m(6)A) Methylation in mRNA with A Dynamic and Reversible Epigenetic Modification.Mol Biotechnol2016 JulWu Rdoi: 10.1007/s12033-016-9947-9.
26379027Corrigendum: Structural basis for selective binding of m(6)A RNA by the YTHDC1 YTH domain.Nat Chem Biol2015 OctXu Cdoi: 10.1038/nchembio1015-815c.
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000344157YTHDC1-2016232XM_017008832ENSP00000339245727 (aa)XP_016864321Q96MU7
ENST00000510746YTHDC1-206515-ENSP0000046218612 (aa)-J3KRW0
ENST00000579690YTHDC1-2072983XM_005265707ENSP00000463982735 (aa)XP_005265764J3QR07
ENST00000505251YTHDC1-203265-ENSP0000046223837 (aa)-J3KS01
ENST00000506175YTHDC1-204581--- (aa)--
ENST00000507529YTHDC1-205689-ENSP0000046199093 (aa)-J3KRG5
ENST00000355665YTHDC1-2023244XM_005265708ENSP00000347888709 (aa)XP_005265765Q96MU7
Gene Model
Click here to download ENSG00000083896's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000083896rs1730872468323330?Mean corpuscular hemoglobin30595370EFO_0004527
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000083896's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000083896YTHDC15759.759ENSAPOG00000013997ythdc15762.768Acanthochromis_polyacanthus
ENSG00000083896YTHDC110097.401ENSAMEG00000005688YTHDC110097.401Ailuropoda_melanoleuca
ENSG00000083896YTHDC17158.513ENSACIG00000019728ythdc18060.048Amphilophus_citrinellus
ENSG00000083896YTHDC15761.468ENSAOCG00000000239ythdc15967.703Amphiprion_ocellaris
ENSG00000083896YTHDC15064.420ENSAPEG00000000618ythdc15368.946Amphiprion_percula
ENSG00000083896YTHDC182100.000ENSAPLG00000009921YTHDC19286.747Anas_platyrhynchos
ENSG00000083896YTHDC18297.368ENSACAG00000009697YTHDC19383.680Anolis_carolinensis
ENSG00000083896YTHDC110099.038ENSANAG00000001522YTHDC110099.038Aotus_nancymaae
ENSG00000083896YTHDC19350.980ENSACLG00000019371ythdc15966.362Astatotilapia_calliptera
ENSG00000083896YTHDC18585.000ENSAMXG00000006978ythdc19265.991Astyanax_mexicanus
ENSG00000083896YTHDC110097.257ENSBTAG00000015572YTHDC110097.257Bos_taurus
ENSG00000083896YTHDC1100100.000ENSCJAG00000009934YTHDC110099.451Callithrix_jacchus
ENSG00000083896YTHDC110097.401ENSCAFG00000002821YTHDC110097.401Canis_familiaris
ENSG00000083896YTHDC110097.401ENSCAFG00020027112YTHDC110097.401Canis_lupus_dingo
ENSG00000083896YTHDC19990.797ENSCHIG00000004810YTHDC19890.797Capra_hircus
ENSG00000083896YTHDC110099.037ENSTSYG00000011668YTHDC110099.037Carlito_syrichta
ENSG00000083896YTHDC110091.892ENSCAPG00000008722YTHDC19069.969Cavia_aperea
ENSG00000083896YTHDC110091.892ENSCPOG00000010929YTHDC110091.197Cavia_porcellus
ENSG00000083896YTHDC1100100.000ENSCCAG00000035754YTHDC110099.450Cebus_capucinus
ENSG00000083896YTHDC1100100.000ENSCATG00000036320YTHDC110099.592Cercocebus_atys
ENSG00000083896YTHDC19997.793ENSCLAG00000005482YTHDC19997.793Chinchilla_lanigera
ENSG00000083896YTHDC1100100.000ENSCSAG00000005252YTHDC110099.588Chlorocebus_sabaeus
ENSG00000083896YTHDC18273.684ENSCHOG00000006136-6890.260Choloepus_hoffmanni
ENSG00000083896YTHDC18297.368ENSCPBG00000021965YTHDC19487.500Chrysemys_picta_bellii
ENSG00000083896YTHDC1100100.000ENSCANG00000004769YTHDC110099.725Colobus_angolensis_palliatus
ENSG00000083896YTHDC110097.415ENSCGRG00001000816Ythdc110097.415Cricetulus_griseus_chok1gshd
ENSG00000083896YTHDC19997.354ENSCGRG00000009807Ythdc19997.354Cricetulus_griseus_crigri
ENSG00000083896YTHDC15760.352ENSCSEG00000020404ythdc15966.906Cynoglossus_semilaevis
ENSG00000083896YTHDC15759.424ENSCVAG00000022349ythdc15965.783Cyprinodon_variegatus
ENSG00000083896YTHDC18583.750ENSDARG00000051953ythdc15878.378Danio_rerio
ENSG00000083896YTHDC110097.297ENSDNOG00000004949YTHDC110096.978Dasypus_novemcinctus
ENSG00000083896YTHDC19998.349ENSDORG00000013045Ythdc110098.331Dipodomys_ordii
ENSG00000083896YTHDC110091.892ENSETEG00000001878YTHDC178100.000Echinops_telfairi
ENSG00000083896YTHDC110097.948ENSEASG00005018383YTHDC110097.948Equus_asinus_asinus
ENSG00000083896YTHDC110097.538ENSECAG00000018303YTHDC110097.538Equus_caballus
ENSG00000083896YTHDC110096.708ENSEEUG00000015466YTHDC110096.708Erinaceus_europaeus
ENSG00000083896YTHDC19270.115ENSELUG00000014029ythdc19562.974Esox_lucius
ENSG00000083896YTHDC110097.260ENSFCAG00000026791YTHDC110097.260Felis_catus
ENSG00000083896YTHDC182100.000ENSFALG00000006581YTHDC18793.917Ficedula_albicollis
ENSG00000083896YTHDC19997.768ENSFDAG00000018560YTHDC110097.768Fukomys_damarensis
ENSG00000083896YTHDC16658.730ENSFHEG00000001286ythdc16056.325Fundulus_heteroclitus
ENSG00000083896YTHDC16464.311ENSGMOG00000018815ythdc17964.311Gadus_morhua
ENSG00000083896YTHDC182100.000ENSGALG00000035906YTHDC18585.994Gallus_gallus
ENSG00000083896YTHDC15166.548ENSGAFG00000001759ythdc15467.391Gambusia_affinis
ENSG00000083896YTHDC16356.452ENSGACG00000015486ythdc15763.017Gasterosteus_aculeatus
ENSG00000083896YTHDC19386.510ENSGAGG00000007108YTHDC19386.364Gopherus_agassizii
ENSG00000083896YTHDC1100100.000ENSGGOG00000021958YTHDC110099.864Gorilla_gorilla
ENSG00000083896YTHDC19351.120ENSHBUG00000019288ythdc15966.362Haplochromis_burtoni
ENSG00000083896YTHDC110097.551ENSHGLG00000006319-10097.551Heterocephalus_glaber_female
ENSG00000083896YTHDC110083.784ENSHGLG00000003239-5778.947Heterocephalus_glaber_female
ENSG00000083896YTHDC110096.580ENSHGLG00100001556-10096.694Heterocephalus_glaber_male
ENSG00000083896YTHDC110083.784ENSHGLG00100008060-5776.485Heterocephalus_glaber_male
ENSG00000083896YTHDC15470.213ENSHCOG00000001520ythdc18470.213Hippocampus_comes
ENSG00000083896YTHDC18582.500ENSIPUG00000018136ythdc16183.759Ictalurus_punctatus
ENSG00000083896YTHDC1100100.000ENSSTOG00000013652YTHDC110098.913Ictidomys_tridecemlineatus
ENSG00000083896YTHDC110094.595ENSJJAG00000010268Ythdc19393.304Jaculus_jaculus
ENSG00000083896YTHDC15760.502ENSKMAG00000006483ythdc18565.533Kryptolebias_marmoratus
ENSG00000083896YTHDC16463.462ENSLBEG00000020831ythdc17275.000Labrus_bergylta
ENSG00000083896YTHDC18288.158ENSLACG00000004893YTHDC19274.022Latimeria_chalumnae
ENSG00000083896YTHDC18289.610ENSLOCG00000003045ythdc19288.702Lepisosteus_oculatus
ENSG00000083896YTHDC110097.143ENSLAFG00000021592YTHDC110097.143Loxodonta_africana
ENSG00000083896YTHDC1100100.000ENSMFAG00000031927YTHDC110099.728Macaca_fascicularis
ENSG00000083896YTHDC1100100.000ENSMMUG00000002265YTHDC110099.725Macaca_mulatta
ENSG00000083896YTHDC1100100.000ENSMNEG00000033751YTHDC110099.725Macaca_nemestrina
ENSG00000083896YTHDC1100100.000ENSMLEG00000042147YTHDC110099.588Mandrillus_leucophaeus
ENSG00000083896YTHDC15561.871ENSMAMG00000013122ythdc15866.826Mastacembelus_armatus
ENSG00000083896YTHDC19350.980ENSMZEG00005023173ythdc15966.362Maylandia_zebra
ENSG00000083896YTHDC182100.000ENSMGAG00000010391YTHDC19286.202Meleagris_gallopavo
ENSG00000083896YTHDC110097.143ENSMAUG00000001286Ythdc110097.143Mesocricetus_auratus
ENSG00000083896YTHDC110098.100ENSMICG00000034640YTHDC110098.100Microcebus_murinus
ENSG00000083896YTHDC110097.415ENSMOCG00000020201Ythdc110097.415Microtus_ochrogaster
ENSG00000083896YTHDC19389.599ENSMODG00000020754-9288.707Monodelphis_domestica
ENSG00000083896YTHDC17747.222ENSMODG00000009173-8861.594Monodelphis_domestica
ENSG00000083896YTHDC18769.476ENSMODG00000014337-9569.830Monodelphis_domestica
ENSG00000083896YTHDC19651.857ENSMODG00000010076-9652.452Monodelphis_domestica
ENSG00000083896YTHDC17747.222ENSMODG00000004117-9262.300Monodelphis_domestica
ENSG00000083896YTHDC15967.797ENSMALG00000013412ythdc15668.857Monopterus_albus
ENSG00000083896YTHDC110094.595MGP_CAROLIEiJ_G0027347Ythdc19792.322Mus_caroli
ENSG00000083896YTHDC110096.879ENSMUSG00000035851Ythdc110096.879Mus_musculus
ENSG00000083896YTHDC110097.151MGP_PahariEiJ_G0017126Ythdc110097.151Mus_pahari
ENSG00000083896YTHDC110097.151MGP_SPRETEiJ_G0028339Ythdc110097.151Mus_spretus
ENSG00000083896YTHDC19997.350ENSMLUG00000016300YTHDC110097.350Myotis_lucifugus
ENSG00000083896YTHDC110091.892ENSNGAG00000024000Ythdc19396.675Nannospalax_galili
ENSG00000083896YTHDC15963.665ENSNBRG00000007663ythdc17066.589Neolamprologus_brichardi
ENSG00000083896YTHDC1100100.000ENSNLEG00000009202YTHDC19998.762Nomascus_leucogenys
ENSG00000083896YTHDC18281.940ENSMEUG00000007128YTHDC18181.940Notamacropus_eugenii
ENSG00000083896YTHDC182100.000ENSOPRG00000008986YTHDC17498.867Ochotona_princeps
ENSG00000083896YTHDC110097.249ENSODEG00000001715YTHDC110097.249Octodon_degus
ENSG00000083896YTHDC19252.408ENSONIG00000012651ythdc15966.819Oreochromis_niloticus
ENSG00000083896YTHDC182100.000ENSOANG00000014398YTHDC15597.468Ornithorhynchus_anatinus
ENSG00000083896YTHDC110089.189ENSOCUG00000015886YTHDC15795.729Oryctolagus_cuniculus
ENSG00000083896YTHDC15661.111ENSORLG00000030544ythdc16066.988Oryzias_latipes
ENSG00000083896YTHDC15660.386ENSORLG00020019316ythdc16066.988Oryzias_latipes_hni
ENSG00000083896YTHDC15661.520ENSOMEG00000000551ythdc16065.526Oryzias_melastigma
ENSG00000083896YTHDC110097.799ENSOGAG00000003362YTHDC110097.799Otolemur_garnettii
ENSG00000083896YTHDC110097.257ENSOARG00000008633YTHDC110097.257Ovis_aries
ENSG00000083896YTHDC110099.728ENSPPAG00000041315YTHDC110099.728Pan_paniscus
ENSG00000083896YTHDC110097.425ENSPPRG00000011979YTHDC110097.425Panthera_pardus
ENSG00000083896YTHDC19997.115ENSPTIG00000015527YTHDC110097.115Panthera_tigris_altaica
ENSG00000083896YTHDC110099.728ENSPTRG00000016105YTHDC110099.728Pan_troglodytes
ENSG00000083896YTHDC1100100.000ENSPANG00000021590YTHDC110099.592Papio_anubis
ENSG00000083896YTHDC18583.750ENSPKIG00000018497ythdc19369.186Paramormyrops_kingsleyae
ENSG00000083896YTHDC18297.368ENSPSIG00000002782YTHDC19286.767Pelodiscus_sinensis
ENSG00000083896YTHDC15556.667ENSPMGG00000000970-7264.808Periophthalmus_magnuspinnatus
ENSG00000083896YTHDC19997.629ENSPEMG00000013850Ythdc110097.629Peromyscus_maniculatus_bairdii
ENSG00000083896YTHDC19389.599ENSPCIG00000006870YTHDC19288.707Phascolarctos_cinereus
ENSG00000083896YTHDC15759.545ENSPFOG00000013404ythdc16065.625Poecilia_formosa
ENSG00000083896YTHDC15759.545ENSPLAG00000011079ythdc18565.625Poecilia_latipinna
ENSG00000083896YTHDC15759.545ENSPMEG00000009238ythdc16065.625Poecilia_mexicana
ENSG00000083896YTHDC15759.712ENSPREG00000016973ythdc15960.050Poecilia_reticulata
ENSG00000083896YTHDC18799.684ENSPPYG00000014726YTHDC110099.684Pongo_abelii
ENSG00000083896YTHDC110094.595ENSPCAG00000009607YTHDC17793.860Procavia_capensis
ENSG00000083896YTHDC110097.297ENSPCOG00000019105YTHDC110093.623Propithecus_coquereli
ENSG00000083896YTHDC110097.297ENSPVAG00000015551YTHDC110094.189Pteropus_vampyrus
ENSG00000083896YTHDC19350.980ENSPNYG00000011687ythdc15966.362Pundamilia_nyererei
ENSG00000083896YTHDC18582.500ENSPNAG00000028365ythdc19369.609Pygocentrus_nattereri
ENSG00000083896YTHDC110096.211ENSRNOG00000001996Ythdc110096.211Rattus_norvegicus
ENSG00000083896YTHDC1100100.000ENSRBIG00000028279YTHDC19998.487Rhinopithecus_bieti
ENSG00000083896YTHDC1100100.000ENSRROG00000035028YTHDC110099.725Rhinopithecus_roxellana
ENSG00000083896YTHDC1100100.000ENSSBOG00000022353YTHDC110099.457Saimiri_boliviensis_boliviensis
ENSG00000083896YTHDC19388.410ENSSHAG00000002538YTHDC19188.554Sarcophilus_harrisii
ENSG00000083896YTHDC18583.750ENSSFOG00015003298ythdc16086.019Scleropages_formosus
ENSG00000083896YTHDC15760.314ENSSMAG00000009086ythdc16065.947Scophthalmus_maximus
ENSG00000083896YTHDC15561.017ENSSDUG00000022008ythdc15967.277Seriola_dumerili
ENSG00000083896YTHDC15561.017ENSSLDG00000007926ythdc15967.277Seriola_lalandi_dorsalis
ENSG00000083896YTHDC18298.684ENSSARG00000010960YTHDC110098.443Sorex_araneus
ENSG00000083896YTHDC19788.889ENSSPUG00000009357YTHDC19283.900Sphenodon_punctatus
ENSG00000083896YTHDC15762.385ENSSPAG00000011449ythdc15967.703Stegastes_partitus
ENSG00000083896YTHDC110096.761ENSSSCG00000035505YTHDC110096.761Sus_scrofa
ENSG00000083896YTHDC182100.000ENSTGUG00000004452-9286.202Taeniopygia_guttata
ENSG00000083896YTHDC16461.224ENSTRUG00000010142ythdc16970.000Takifugu_rubripes
ENSG00000083896YTHDC18660.304ENSTNIG00000013243ythdc18966.279Tetraodon_nigroviridis
ENSG00000083896YTHDC182100.000ENSTBEG00000011546YTHDC19287.964Tupaia_belangeri
ENSG00000083896YTHDC110096.443ENSTTRG00000005083YTHDC110096.443Tursiops_truncatus
ENSG00000083896YTHDC110094.595ENSUAMG00000010388YTHDC110097.349Ursus_americanus
ENSG00000083896YTHDC110094.595ENSUMAG00000013668YTHDC19883.983Ursus_maritimus
ENSG00000083896YTHDC110098.025ENSVPAG00000009040YTHDC110098.025Vicugna_pacos
ENSG00000083896YTHDC19997.397ENSVVUG00000005387YTHDC110097.206Vulpes_vulpes
ENSG00000083896YTHDC18292.105ENSXETG00000017960ythdc19172.768Xenopus_tropicalis
ENSG00000083896YTHDC15052.574ENSXCOG00000000530ythdc17952.692Xiphophorus_couchianus
ENSG00000083896YTHDC15660.000ENSXMAG00000005196ythdc16165.138Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003723RNA binding20167602.IDAFunction
GO:0005515protein binding19282290.21988832.23602568.25416956.26876937.28984244.IPIFunction
GO:0005634nucleus20167602.IDAComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005886plasma membrane-IDAComponent
GO:0006376mRNA splice site selection20167602.IDAProcess
GO:0006406mRNA export from nucleus28984244.IDAProcess
GO:0009048dosage compensation by inactivation of X chromosome27602518.IDAProcess
GO:0010608posttranscriptional regulation of gene expression-ISSProcess
GO:0016607nuclear speck26876937.IDAComponent
GO:0048024regulation of mRNA splicing, via spliceosome26876937.28984244.IDAProcess
GO:1990247N6-methyladenosine-containing RNA binding25242552.26318451.26876937.27602518.28984244.IDAFunction

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