EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000084072 (Gene tree)
Gene ID
10450
Gene Symbol
PPIE
Alias
CyP-33|MGC3736|MGC111222
Full Name
peptidylprolyl isomerase E
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
71,733 bases
Position
chr1:39,692,182-39,763,914
Accession
9258
RBP type
canonical RBP
Summary
The protein encoded by this gene is a member of the peptidyl-prolyl cis-trans isomerase (PPIase) family. PPIases catalyze the cis-trans isomerization of proline imidic peptide bonds in oligopeptides and accelerate the folding of proteins. This protein contains a highly conserved cyclophilin (CYP) domain as well as an RNA-binding domain. It was shown to possess PPIase and protein folding activities, and it also exhibits RNA-binding activity. Alternative splicing results in multiple transcript variants. A related pseudogene, which is also located on chromosome 1, has been identified. [provided by RefSeq, Aug 2010]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000431714RRM_1PF00076.221.1e-2011
ENSP00000348904RRM_1PF00076.221.8e-2011
ENSP00000312769RRM_1PF00076.221.9e-2011
ENSP00000361918RRM_1PF00076.221.9e-2011
ENSP00000361925RRM_1PF00076.228.2e-0511
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
20460131Molecular mechanism of MLL PHD3 and RNA recognition by the Cyp33 RRM domain.J Mol Biol2010 Jul 9Hom RAdoi: 10.1016/j.jmb.2010.04.067
8977107A nuclear RNA-binding cyclophilin in human T cells.FEBS Lett1996 Dec 2Mi H-
159634611.88 A crystal structure of the C domain of hCyP33: a novel domain of peptidyl-prolyl cis-trans isomerase.Biochem Biophys Res Commun2005 Aug 5Wang T-
18258190Human CyP33 binds specifically to mRNA and binding stimulates PPIase activity of hCyP33.FEBS Lett2008 Mar 5Wang Ydoi: 10.1016/j.febslet.2008.01.055
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000456578PPIE-205615--- (aa)--
ENST00000480169PPIE-211891--- (aa)--
ENST00000356511PPIE-2021079-ENSP00000348904296 (aa)-Q9UNP9
ENST00000470018PPIE-207947-ENSP0000043668971 (aa)-E9PIB0
ENST00000495526PPIE-2144651-ENSP0000043498938 (aa)-E9PMH0
ENST00000372835PPIE-204842-ENSP00000361925250 (aa)-E9PEQ6
ENST00000474804PPIE-209793-ENSP0000043239637 (aa)-H0YCV4
ENST00000475350PPIE-2101213-ENSP0000043488836 (aa)-H0YE31
ENST00000372830PPIE-2031198XM_006710289ENSP00000361918314 (aa)XP_006710352Q9UNP9
ENST00000324379PPIE-2011277XM_006710290ENSP00000312769301 (aa)XP_006710353Q9UNP9
ENST00000497370PPIE-215913XM_011540501ENSP00000433475213 (aa)XP_011538803E9PKY5
ENST00000482751PPIE-2122564--- (aa)--
ENST00000485507PPIE-213783--- (aa)--
ENST00000467741PPIE-206626--- (aa)--
ENST00000470213PPIE-208927-ENSP00000431714208 (aa)-E9PK21
Gene Model
Click here to download ENSG00000084072's gene model file
Pathways
Pathway IDPathway NameSource
hsa03040SpliceosomeKEGG
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000084072rs12086750139744796CBlood protein levels29875488[0.32-0.44] unit decrease0.38EFO_0007937
ENSG00000084072rs11577371139694913GBone mineral density (Ward's triangle area)27397699[NR] unit decrease0.15EFO_0007785
ENSG00000084072rs9787249139747206ABlood protein levels28240269[0.37-0.55] unit decrease0.4596EFO_0008257
ENSG00000084072rs506424139719316?Cold sores28928442[0.041-0.107] unit decrease0.074EFO_0008402
ENSG00000084072rs1046988139753393CBlood protein levels30072576[0.21-0.31] unit increase0.26EFO_0007937
ENSG00000084072rs76571594139739351?Heel bone mineral density30595370EFO_0009270
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000084072's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000084072PPIE5139.474ENSG00000070756PABPC18139.344
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000084072PPIE10085.762ENSAPOG00000001160ppie10086.093Acanthochromis_polyacanthus
ENSG00000084072PPIE10082.800ENSACIG00000022599ppie10082.800Amphilophus_citrinellus
ENSG00000084072PPIE10085.762ENSAOCG00000021474ppie10086.093Amphiprion_ocellaris
ENSG00000084072PPIE10085.762ENSAPEG00000019253ppie10086.093Amphiprion_percula
ENSG00000084072PPIE10085.714ENSATEG00000007395ppie10085.714Anabas_testudineus
ENSG00000084072PPIE10090.610ENSACAG00000002688PPIE10090.365Anolis_carolinensis
ENSG00000084072PPIE10098.671ENSANAG00000033595PPIE10098.671Aotus_nancymaae
ENSG00000084072PPIE10085.762ENSACLG00000019518ppie10086.093Astatotilapia_calliptera
ENSG00000084072PPIE10086.379ENSAMXG00000018767ppie10086.379Astyanax_mexicanus
ENSG00000084072PPIE10098.007ENSBTAG00000047314PPIE10098.007Bos_taurus
ENSG00000084072PPIE10098.800ENSCJAG00000002589PPIE10098.800Callithrix_jacchus
ENSG00000084072PPIE10099.336ENSCAFG00000003031PPIE10099.336Canis_familiaris
ENSG00000084072PPIE10099.336ENSCAFG00020004132PPIE10099.336Canis_lupus_dingo
ENSG00000084072PPIE9997.642ENSCHIG00000012509-10095.017Capra_hircus
ENSG00000084072PPIE9856.766ENSCHIG00000023905-10056.766Capra_hircus
ENSG00000084072PPIE10099.003ENSTSYG00000000401PPIE10099.003Carlito_syrichta
ENSG00000084072PPIE10098.339ENSCPOG00000007365PPIE10098.339Cavia_porcellus
ENSG00000084072PPIE10099.336ENSCCAG00000024434PPIE10099.336Cebus_capucinus
ENSG00000084072PPIE10099.668ENSCATG00000034495PPIE10099.668Cercocebus_atys
ENSG00000084072PPIE10097.183ENSCLAG00000010288PPIE10092.359Chinchilla_lanigera
ENSG00000084072PPIE10099.531ENSCSAG00000001131PPIE10098.684Chlorocebus_sabaeus
ENSG00000084072PPIE7776.970ENSCHOG00000009018-10068.831Choloepus_hoffmanni
ENSG00000084072PPIE10091.200ENSCPBG00000001090PPIE10091.200Chrysemys_picta_bellii
ENSG00000084072PPIE10099.336ENSCANG00000029996PPIE10099.336Colobus_angolensis_palliatus
ENSG00000084072PPIE10098.339ENSCGRG00001018491Ppie10098.339Cricetulus_griseus_chok1gshd
ENSG00000084072PPIE10098.339ENSCGRG00000005685Ppie10098.339Cricetulus_griseus_crigri
ENSG00000084072PPIE10084.314ENSCSEG00000000047ppie10083.882Cynoglossus_semilaevis
ENSG00000084072PPIE10086.047ENSCVAG00000019238ppie10086.047Cyprinodon_variegatus
ENSG00000084072PPIE10086.093ENSDARG00000103234ppie9186.424Danio_rerio
ENSG00000084072PPIE9791.304ENSDNOG00000002404-9987.055Dasypus_novemcinctus
ENSG00000084072PPIE10097.653ENSDNOG00000034942-9998.000Dasypus_novemcinctus
ENSG00000084072PPIE10099.531ENSDORG00000005175Ppie10099.336Dipodomys_ordii
ENSG00000084072PPIE10098.400ENSEASG00005014118-10098.400Equus_asinus_asinus
ENSG00000084072PPIE10098.671ENSECAG00000031692-10098.671Equus_caballus
ENSG00000084072PPIE10098.400ENSECAG00000038706-10098.400Equus_caballus
ENSG00000084072PPIE10082.781ENSELUG00000003162ppie10082.781Esox_lucius
ENSG00000084072PPIE10099.336ENSFCAG00000006027-10099.336Felis_catus
ENSG00000084072PPIE9989.632ENSFALG00000000545PPIE9389.632Ficedula_albicollis
ENSG00000084072PPIE10097.653ENSFDAG00000017337PPIE9796.918Fukomys_damarensis
ENSG00000084072PPIE10086.711ENSFHEG00000007560ppie10086.711Fundulus_heteroclitus
ENSG00000084072PPIE10082.450ENSGMOG00000019015ppie10082.450Gadus_morhua
ENSG00000084072PPIE10091.080ENSGALG00000013383PPIE9191.781Gallus_gallus
ENSG00000084072PPIE10086.047ENSGAFG00000018146ppie10086.047Gambusia_affinis
ENSG00000084072PPIE10083.444ENSGACG00000007165ppie10083.775Gasterosteus_aculeatus
ENSG00000084072PPIE10091.549ENSGAGG00000001882PPIE9593.966Gopherus_agassizii
ENSG00000084072PPIE100100.000ENSGGOG00000015783PPIE100100.000Gorilla_gorilla
ENSG00000084072PPIE10085.430ENSHBUG00000020159ppie10085.762Haplochromis_burtoni
ENSG00000084072PPIE10097.674ENSHGLG00000012598PPIE10097.674Heterocephalus_glaber_female
ENSG00000084072PPIE10097.183ENSHGLG00100001779PPIE9897.251Heterocephalus_glaber_male
ENSG00000084072PPIE10085.050ENSHCOG00000012644ppie10085.050Hippocampus_comes
ENSG00000084072PPIE9988.704ENSIPUG00000016601ppie9989.037Ictalurus_punctatus
ENSG00000084072PPIE10098.671ENSSTOG00000010445PPIE10098.671Ictidomys_tridecemlineatus
ENSG00000084072PPIE10098.592ENSJJAG00000022703Ppie10098.007Jaculus_jaculus
ENSG00000084072PPIE10085.382ENSKMAG00000013555ppie10085.382Kryptolebias_marmoratus
ENSG00000084072PPIE10088.742ENSLACG00000011207PPIE10088.742Latimeria_chalumnae
ENSG00000084072PPIE10098.007ENSLAFG00000028312-10098.007Loxodonta_africana
ENSG00000084072PPIE10099.668ENSMFAG00000002082PPIE10099.668Macaca_fascicularis
ENSG00000084072PPIE10099.668ENSMMUG00000018869PPIE10099.668Macaca_mulatta
ENSG00000084072PPIE10099.668ENSMNEG00000031362PPIE10099.668Macaca_nemestrina
ENSG00000084072PPIE10099.668ENSMLEG00000040735PPIE10099.668Mandrillus_leucophaeus
ENSG00000084072PPIE10083.444ENSMAMG00000010005ppie10083.775Mastacembelus_armatus
ENSG00000084072PPIE10085.762ENSMZEG00005006117ppie10086.093Maylandia_zebra
ENSG00000084072PPIE10095.775ENSMAUG00000020323Ppie10098.225Mesocricetus_auratus
ENSG00000084072PPIE10098.339ENSMOCG00000018443-10098.339Microtus_ochrogaster
ENSG00000084072PPIE10095.775ENSMOCG00000020138-8295.238Microtus_ochrogaster
ENSG00000084072PPIE10084.385ENSMMOG00000002329ppie10084.385Mola_mola
ENSG00000084072PPIE10093.688ENSMODG00000017659PPIE10093.688Monodelphis_domestica
ENSG00000084072PPIE10084.437ENSMALG00000011041ppie10084.106Monopterus_albus
ENSG00000084072PPIE10098.122MGP_CAROLIEiJ_G0026431Ppie10098.007Mus_caroli
ENSG00000084072PPIE10098.592ENSMUSG00000028651Ppie10098.339Mus_musculus
ENSG00000084072PPIE10098.122MGP_PahariEiJ_G0028761Ppie10098.007Mus_pahari
ENSG00000084072PPIE10098.592MGP_SPRETEiJ_G0027411Ppie10098.339Mus_spretus
ENSG00000084072PPIE10098.675ENSMPUG00000014345PPIE10098.675Mustela_putorius_furo
ENSG00000084072PPIE10098.122ENSMLUG00000006201-10097.342Myotis_lucifugus
ENSG00000084072PPIE10097.183ENSMLUG00000016233-10098.276Myotis_lucifugus
ENSG00000084072PPIE9950.704ENSMLUG00000027940-9754.000Myotis_lucifugus
ENSG00000084072PPIE10099.668ENSNLEG00000011979PPIE10099.668Nomascus_leucogenys
ENSG00000084072PPIE9988.571ENSMEUG00000005090PPIE10089.177Notamacropus_eugenii
ENSG00000084072PPIE10095.775ENSOPRG00000015178-9985.556Ochotona_princeps
ENSG00000084072PPIE10097.342ENSODEG00000007670-10097.342Octodon_degus
ENSG00000084072PPIE10075.415ENSODEG00000013727-7475.415Octodon_degus
ENSG00000084072PPIE10085.430ENSONIG00000008165ppie10085.762Oreochromis_niloticus
ENSG00000084072PPIE10094.684ENSOANG00000010003PPIE10093.023Ornithorhynchus_anatinus
ENSG00000084072PPIE10098.122ENSOCUG00000007665PPIE10098.007Oryctolagus_cuniculus
ENSG00000084072PPIE10085.762ENSORLG00015015095ppie10085.762Oryzias_latipes_hsok
ENSG00000084072PPIE10085.762ENSOMEG00000014458ppie10085.762Oryzias_melastigma
ENSG00000084072PPIE10098.122ENSOGAG00000003620PPIE10097.697Otolemur_garnettii
ENSG00000084072PPIE10097.653ENSOARG00000020124PPIE10097.039Ovis_aries
ENSG00000084072PPIE100100.000ENSPPAG00000042403PPIE100100.000Pan_paniscus
ENSG00000084072PPIE10099.336ENSPPRG00000014232PPIE10099.336Panthera_pardus
ENSG00000084072PPIE10099.336ENSPTIG00000003196PPIE10099.336Panthera_tigris_altaica
ENSG00000084072PPIE100100.000ENSPTRG00000000577PPIE100100.000Pan_troglodytes
ENSG00000084072PPIE10099.668ENSPANG00000000575PPIE10099.668Papio_anubis
ENSG00000084072PPIE10090.610ENSPSIG00000016383PPIE8890.847Pelodiscus_sinensis
ENSG00000084072PPIE10085.149ENSPMGG00000009082ppie10085.149Periophthalmus_magnuspinnatus
ENSG00000084072PPIE10095.775ENSPEMG00000013681Ppie10098.225Peromyscus_maniculatus_bairdii
ENSG00000084072PPIE10093.023ENSPCIG00000021413PPIE10093.023Phascolarctos_cinereus
ENSG00000084072PPIE10085.099ENSPFOG00000002535ppie10085.099Poecilia_formosa
ENSG00000084072PPIE10085.382ENSPLAG00000010126ppie10085.382Poecilia_latipinna
ENSG00000084072PPIE10085.382ENSPMEG00000019748ppie10085.382Poecilia_mexicana
ENSG00000084072PPIE9985.000ENSPREG00000001551ppie9985.000Poecilia_reticulata
ENSG00000084072PPIE10099.531ENSPPYG00000001501PPIE9898.980Pongo_abelii
ENSG00000084072PPIE10099.061ENSPVAG00000002120PPIE10099.283Pteropus_vampyrus
ENSG00000084072PPIE10083.113ENSPNYG00000006336ppie10083.444Pundamilia_nyererei
ENSG00000084072PPIE10087.417ENSPNAG00000007122ppie10087.417Pygocentrus_nattereri
ENSG00000084072PPIE10097.674ENSRNOG00000014762Ppie10097.674Rattus_norvegicus
ENSG00000084072PPIE10099.668ENSRBIG00000041625PPIE10099.668Rhinopithecus_bieti
ENSG00000084072PPIE10099.600ENSRROG00000044935PPIE10099.600Rhinopithecus_roxellana
ENSG00000084072PPIE10099.336ENSSBOG00000035061PPIE10099.336Saimiri_boliviensis_boliviensis
ENSG00000084072PPIE10092.691ENSSHAG00000018113PPIE10092.691Sarcophilus_harrisii
ENSG00000084072PPIE10088.040ENSSFOG00015007542ppie10088.040Scleropages_formosus
ENSG00000084072PPIE10085.099ENSSMAG00000008993ppie10084.768Scophthalmus_maximus
ENSG00000084072PPIE10085.430ENSSDUG00000012593ppie10085.430Seriola_dumerili
ENSG00000084072PPIE10085.430ENSSLDG00000013079ppie10085.430Seriola_lalandi_dorsalis
ENSG00000084072PPIE10095.775ENSSARG00000005703PPIE10093.907Sorex_araneus
ENSG00000084072PPIE10091.549ENSSPUG00000003147PPIE10089.547Sphenodon_punctatus
ENSG00000084072PPIE10086.424ENSSPAG00000009232ppie10086.755Stegastes_partitus
ENSG00000084072PPIE10098.592ENSSSCG00000003664-9698.276Sus_scrofa
ENSG00000084072PPIE10088.732ENSTGUG00000001276PPIE10084.549Taeniopygia_guttata
ENSG00000084072PPIE10085.714ENSTRUG00000006308ppie10085.714Takifugu_rubripes
ENSG00000084072PPIE10085.430ENSTNIG00000016901ppie10085.762Tetraodon_nigroviridis
ENSG00000084072PPIE10096.714ENSTTRG00000014385PPIE9893.506Tursiops_truncatus
ENSG00000084072PPIE10099.336ENSUMAG00000017319PPIE10099.336Ursus_maritimus
ENSG00000084072PPIE8698.370ENSVPAG00000010049PPIE10086.809Vicugna_pacos
ENSG00000084072PPIE10099.336ENSVVUG00000005268-9299.336Vulpes_vulpes
ENSG00000084072PPIE10088.704ENSXETG00000010944ppie10088.704Xenopus_tropicalis
ENSG00000084072PPIE10086.047ENSXMAG00000019027ppie10086.047Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome11991638.ICProcess
GO:0000398mRNA splicing, via spliceosome28076346.IDAProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0000413protein peptidyl-prolyl isomerization20676357.IDAProcess
GO:0003723RNA binding22658674.HDAFunction
GO:0003723RNA binding11313484.TASFunction
GO:0003729mRNA binding18258190.IDAFunction
GO:0003755peptidyl-prolyl cis-trans isomerase activity21873635.IBAFunction
GO:0003755peptidyl-prolyl cis-trans isomerase activity18258190.20676357.IDAFunction
GO:0003755peptidyl-prolyl cis-trans isomerase activity11313484.TASFunction
GO:0005515protein binding11313484.16189514.20541251.22365833.25416956.25599396.IPIFunction
GO:0005576extracellular region-TASComponent
GO:0005634nucleus11313484.28076346.IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005829cytosol-IDAComponent
GO:0006283transcription-coupled nucleotide-excision repair-TASProcess
GO:0006355regulation of transcription, DNA-templated11313484.IMPProcess
GO:0008143poly(A) binding18258190.IDAFunction
GO:0016018cyclosporin A binding21873635.IBAFunction
GO:0016018cyclosporin A binding20676357.IDAFunction
GO:0016607nuclear speck-IDAComponent
GO:0034774secretory granule lumen-TASComponent
GO:0042026protein refolding21873635.IBAProcess
GO:0043312neutrophil degranulation-TASProcess
GO:0045070positive regulation of viral genome replication19932913.IMPProcess
GO:0051082unfolded protein binding21873635.IBAFunction
GO:0071007U2-type catalytic step 2 spliceosome28076346.IDAComponent
GO:0071013catalytic step 2 spliceosome11991638.IDAComponent
GO:1904813ficolin-1-rich granule lumen-TASComponent

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