EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000086504 (Gene tree)
Gene ID
10573
Gene Symbol
MRPL28
Alias
p15|MAAT1
Full Name
mitochondrial ribosomal protein L28
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
4,321 bases
Position
chr16:366,969-371,289
Accession
14484
RBP type
canonical RBP
Summary
Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein, a part of which was originally isolated by its ability to recognize tyrosinase in an HLA-A24-restricted fashion. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000395305Ribosomal_L28PF00830.192.1e-0611
ENSP00000390399Ribosomal_L28PF00830.192.6e-0611
ENSP00000398684Ribosomal_L28PF00830.193e-0611
ENSP00000199706Ribosomal_L28PF00830.193.3e-0611
ENSP00000374326Ribosomal_L28PF00830.193.3e-0611
ENSP00000497004Ribosomal_L28PF00830.193.3e-0611
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000429738MRPL28-203310-ENSP0000041403848 (aa)-A2IDC5
ENST00000389675MRPL28-202865XM_005255041ENSP00000374326256 (aa)XP_005255098Q13084
ENST00000481453MRPL28-2092229--- (aa)--
ENST00000450882MRPL28-206619-ENSP00000395305194 (aa)-A2IDC7
ENST00000469744MRPL28-2081467--- (aa)--
ENST00000461550MRPL28-2071478--- (aa)--
ENST00000447696MRPL28-205722-ENSP00000390399218 (aa)-Q4TT37
ENST00000441883MRPL28-204800-ENSP00000398684240 (aa)-A2IDC6
ENST00000483764MRPL28-2101512--- (aa)--
ENST00000648346MRPL28-2111707-ENSP00000497004256 (aa)-UPI00001678A4
ENST00000199706MRPL28-2011098-ENSP00000199706256 (aa)-Q13084
Gene Model
Click here to download ENSG00000086504's gene model file
Pathways
Pathway IDPathway NameSource
hsa03010RibosomeKEGG
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000086504rs6203386016367289?Mean corpuscular hemoglobin29403010[0.029-0.058] unit increase novel0.043631464EFO_0004527
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000086504's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000086504MRPL2810067.431ENSAPOG00000016883mrpl289963.745Acanthochromis_polyacanthus
ENSG00000086504MRPL2810087.629ENSAMEG00000007031MRPL289985.827Ailuropoda_melanoleuca
ENSG00000086504MRPL2810067.890ENSACIG00000005641mrpl2810064.286Amphilophus_citrinellus
ENSG00000086504MRPL2810067.890ENSAOCG00000024148mrpl289667.873Amphiprion_ocellaris
ENSG00000086504MRPL2810067.890ENSAPEG00000010705mrpl2810063.889Amphiprion_percula
ENSG00000086504MRPL2810069.266ENSATEG00000013085mrpl2810066.270Anabas_testudineus
ENSG00000086504MRPL285780.882ENSAPLG00000006257MRPL289680.882Anas_platyrhynchos
ENSG00000086504MRPL2810064.143ENSACAG00000015301MRPL2810064.122Anolis_carolinensis
ENSG00000086504MRPL2810094.037ENSANAG00000022423MRPL2810092.578Aotus_nancymaae
ENSG00000086504MRPL2810065.596ENSACLG00000017376mrpl2810062.698Astatotilapia_calliptera
ENSG00000086504MRPL2810068.807ENSAMXG00000001999mrpl289966.270Astyanax_mexicanus
ENSG00000086504MRPL2810087.113ENSBTAG00000016581MRPL289286.614Bos_taurus
ENSG00000086504MRPL2810075.519ENSCAFG00000019682MRPL289977.255Canis_familiaris
ENSG00000086504MRPL2810076.667ENSCAFG00020009225MRPL289977.559Canis_lupus_dingo
ENSG00000086504MRPL2810086.598ENSCHIG00000016968MRPL289986.220Capra_hircus
ENSG00000086504MRPL289782.731ENSTSYG00000032509MRPL289586.957Carlito_syrichta
ENSG00000086504MRPL286290.566ENSCAPG00000011681MRPL289890.566Cavia_aperea
ENSG00000086504MRPL2810088.532ENSCPOG00000007176MRPL289888.189Cavia_porcellus
ENSG00000086504MRPL2810093.814ENSCCAG00000030887MRPL2810091.016Cebus_capucinus
ENSG00000086504MRPL2810097.248ENSCATG00000040016MRPL2810096.484Cercocebus_atys
ENSG00000086504MRPL2810088.073ENSCLAG00000014858MRPL289988.189Chinchilla_lanigera
ENSG00000086504MRPL2810096.789ENSCSAG00000012838MRPL2810095.703Chlorocebus_sabaeus
ENSG00000086504MRPL2810076.147ENSCPBG00000026390MRPL289974.900Chrysemys_picta_bellii
ENSG00000086504MRPL289947.534ENSCING00000023726-9346.586Ciona_intestinalis
ENSG00000086504MRPL289943.882ENSCSAVG00000003761-9442.642Ciona_savignyi
ENSG00000086504MRPL2810095.872ENSCANG00000033941MRPL2810095.703Colobus_angolensis_palliatus
ENSG00000086504MRPL2810088.144ENSCGRG00001012825Mrpl289986.614Cricetulus_griseus_chok1gshd
ENSG00000086504MRPL2810088.144ENSCGRG00000014549Mrpl289986.614Cricetulus_griseus_crigri
ENSG00000086504MRPL2810070.642ENSCSEG00000008095mrpl2810068.254Cynoglossus_semilaevis
ENSG00000086504MRPL2810072.936ENSCVAG00000005123mrpl2810068.254Cyprinodon_variegatus
ENSG00000086504MRPL2810070.183ENSDARG00000057805mrpl2810067.460Danio_rerio
ENSG00000086504MRPL286388.125ENSDORG00000024147Mrpl2810088.125Dipodomys_ordii
ENSG00000086504MRPL2810063.014ENSEBUG00000004106mrpl289462.712Eptatretus_burgeri
ENSG00000086504MRPL2810087.629ENSEASG00005018175MRPL289787.149Equus_asinus_asinus
ENSG00000086504MRPL2810087.156ENSECAG00000022663MRPL289786.747Equus_caballus
ENSG00000086504MRPL2810087.629ENSEEUG00000006626MRPL289284.252Erinaceus_europaeus
ENSG00000086504MRPL2810072.936ENSELUG00000014104mrpl2810069.841Esox_lucius
ENSG00000086504MRPL2810085.567ENSFCAG00000041050MRPL289983.071Felis_catus
ENSG00000086504MRPL286079.310ENSFALG00000004103MRPL289579.310Ficedula_albicollis
ENSG00000086504MRPL2810087.615ENSFDAG00000011002MRPL289986.614Fukomys_damarensis
ENSG00000086504MRPL2810071.689ENSFHEG00000006545mrpl2810067.984Fundulus_heteroclitus
ENSG00000086504MRPL2810067.431ENSGMOG00000010597mrpl289864.683Gadus_morhua
ENSG00000086504MRPL2810070.183ENSGALG00000007473MRPL289669.583Gallus_gallus
ENSG00000086504MRPL2810070.642ENSGAFG00000012123mrpl289966.932Gambusia_affinis
ENSG00000086504MRPL2810067.890ENSGACG00000009641mrpl2810065.234Gasterosteus_aculeatus
ENSG00000086504MRPL2810075.688ENSGAGG00000023391MRPL289974.104Gopherus_agassizii
ENSG00000086504MRPL2810099.541ENSGGOG00000006668MRPL2810099.219Gorilla_gorilla
ENSG00000086504MRPL2810066.055ENSHBUG00000002357mrpl289466.063Haplochromis_burtoni
ENSG00000086504MRPL2810089.450ENSHGLG00000003807MRPL289988.583Heterocephalus_glaber_female
ENSG00000086504MRPL2810089.450ENSHGLG00100012704MRPL289988.583Heterocephalus_glaber_male
ENSG00000086504MRPL2810068.349ENSHCOG00000000219mrpl2810064.683Hippocampus_comes
ENSG00000086504MRPL2810072.477ENSIPUG00000015984mrpl289969.444Ictalurus_punctatus
ENSG00000086504MRPL2810083.945ENSSTOG00000012316MRPL289782.677Ictidomys_tridecemlineatus
ENSG00000086504MRPL2810087.615ENSJJAG00000008947Mrpl289985.827Jaculus_jaculus
ENSG00000086504MRPL2810068.349ENSKMAG00000021277mrpl2810065.476Kryptolebias_marmoratus
ENSG00000086504MRPL2810061.991ENSLBEG00000020499mrpl289961.024Labrus_bergylta
ENSG00000086504MRPL2810058.696ENSLACG00000009989MRPL2810058.113Latimeria_chalumnae
ENSG00000086504MRPL2810074.312ENSLOCG00000014850mrpl2810072.332Lepisosteus_oculatus
ENSG00000086504MRPL2810084.536ENSLAFG00000010776MRPL2810083.004Loxodonta_africana
ENSG00000086504MRPL2810096.789ENSMFAG00000006698MRPL2810096.484Macaca_fascicularis
ENSG00000086504MRPL2810096.392ENSMMUG00000000609MRPL2810096.094Macaca_mulatta
ENSG00000086504MRPL2810096.789ENSMNEG00000027279MRPL2810096.094Macaca_nemestrina
ENSG00000086504MRPL2810096.789ENSMLEG00000002439MRPL2810096.484Mandrillus_leucophaeus
ENSG00000086504MRPL2810067.431ENSMAMG00000011487mrpl2810064.286Mastacembelus_armatus
ENSG00000086504MRPL2810065.596ENSMZEG00005016524mrpl2810062.698Maylandia_zebra
ENSG00000086504MRPL2810087.156ENSMAUG00000003487Mrpl289985.827Mesocricetus_auratus
ENSG00000086504MRPL2810089.450ENSMICG00000031344MRPL2810088.672Microcebus_murinus
ENSG00000086504MRPL2810085.780ENSMOCG00000014836Mrpl289984.646Microtus_ochrogaster
ENSG00000086504MRPL2810070.183ENSMMOG00000012412mrpl2810068.254Mola_mola
ENSG00000086504MRPL2810080.833ENSMODG00000016666MRPL2810080.632Monodelphis_domestica
ENSG00000086504MRPL2810068.807ENSMALG00000011904mrpl2810066.932Monopterus_albus
ENSG00000086504MRPL2810086.239MGP_CAROLIEiJ_G0021273Mrpl289985.039Mus_caroli
ENSG00000086504MRPL2810086.239ENSMUSG00000024181Mrpl289985.039Mus_musculus
ENSG00000086504MRPL2810084.862MGP_PahariEiJ_G0023591Mrpl289983.465Mus_pahari
ENSG00000086504MRPL2810086.239MGP_SPRETEiJ_G0022184Mrpl289985.039Mus_spretus
ENSG00000086504MRPL2810089.175ENSMPUG00000016020MRPL289987.008Mustela_putorius_furo
ENSG00000086504MRPL2810090.206ENSMLUG00000010009MRPL2810089.062Myotis_lucifugus
ENSG00000086504MRPL2810086.697ENSNGAG00000016312Mrpl289586.878Nannospalax_galili
ENSG00000086504MRPL2810066.514ENSNBRG00000005544mrpl2810063.095Neolamprologus_brichardi
ENSG00000086504MRPL2810098.165ENSNLEG00000031011MRPL2810098.047Nomascus_leucogenys
ENSG00000086504MRPL2810081.250ENSMEUG00000000407MRPL289980.078Notamacropus_eugenii
ENSG00000086504MRPL2810088.532ENSODEG00000015538MRPL289988.583Octodon_degus
ENSG00000086504MRPL2810066.055ENSONIG00000005965mrpl2810062.698Oreochromis_niloticus
ENSG00000086504MRPL2810070.642ENSORLG00000006806mrpl2810066.667Oryzias_latipes
ENSG00000086504MRPL2810070.642ENSORLG00020002937mrpl2810066.667Oryzias_latipes_hni
ENSG00000086504MRPL2810070.183ENSORLG00015005123mrpl2810066.270Oryzias_latipes_hsok
ENSG00000086504MRPL2810070.183ENSOMEG00000013553mrpl2810065.873Oryzias_melastigma
ENSG00000086504MRPL2810088.073ENSOGAG00000014941MRPL2810087.109Otolemur_garnettii
ENSG00000086504MRPL2810087.113ENSOARG00000011786MRPL289986.614Ovis_aries
ENSG00000086504MRPL2810098.828ENSPPAG00000034473MRPL2810098.828Pan_paniscus
ENSG00000086504MRPL2810086.082ENSPPRG00000002937MRPL289983.858Panthera_pardus
ENSG00000086504MRPL2810086.082ENSPTIG00000017626MRPL289983.858Panthera_tigris_altaica
ENSG00000086504MRPL2810099.219ENSPTRG00000047553MRPL2810099.219Pan_troglodytes
ENSG00000086504MRPL2810096.789ENSPANG00000018773MRPL2810096.484Papio_anubis
ENSG00000086504MRPL2810072.477ENSPKIG00000010370mrpl2810069.323Paramormyrops_kingsleyae
ENSG00000086504MRPL2810077.064ENSPSIG00000011177MRPL289776.891Pelodiscus_sinensis
ENSG00000086504MRPL2810071.560ENSPMGG00000014190mrpl289968.526Periophthalmus_magnuspinnatus
ENSG00000086504MRPL2810088.144ENSPEMG00000019054Mrpl289986.220Peromyscus_maniculatus_bairdii
ENSG00000086504MRPL289964.977ENSPMAG00000004202mrpl289863.095Petromyzon_marinus
ENSG00000086504MRPL2810082.500ENSPCIG00000000377MRPL288981.818Phascolarctos_cinereus
ENSG00000086504MRPL2810068.349ENSPFOG00000009485mrpl2810065.079Poecilia_formosa
ENSG00000086504MRPL2810068.807ENSPLAG00000020059mrpl2810065.079Poecilia_latipinna
ENSG00000086504MRPL2810069.266ENSPMEG00000012919mrpl2810065.873Poecilia_mexicana
ENSG00000086504MRPL2810067.890ENSPREG00000022968mrpl2810064.286Poecilia_reticulata
ENSG00000086504MRPL2810099.083ENSPPYG00000006906MRPL2810099.095Pongo_abelii
ENSG00000086504MRPL2810085.052ENSPCAG00000011480MRPL2810083.984Procavia_capensis
ENSG00000086504MRPL2810090.367ENSPCOG00000021895MRPL2810089.062Propithecus_coquereli
ENSG00000086504MRPL2810073.438ENSPVAG00000000551MRPL2810073.438Pteropus_vampyrus
ENSG00000086504MRPL2810065.596ENSPNYG00000005347mrpl289465.611Pundamilia_nyererei
ENSG00000086504MRPL2810069.725ENSPNAG00000009296mrpl289867.470Pygocentrus_nattereri
ENSG00000086504MRPL2810085.321ENSRNOG00000042720Mrpl289984.646Rattus_norvegicus
ENSG00000086504MRPL2810096.875ENSRBIG00000029953MRPL2810096.875Rhinopithecus_bieti
ENSG00000086504MRPL2810096.907ENSRROG00000042756MRPL2810096.875Rhinopithecus_roxellana
ENSG00000086504MRPL289994.444ENSSBOG00000019789MRPL2810092.126Saimiri_boliviensis_boliviensis
ENSG00000086504MRPL2810081.193ENSSHAG00000007606MRPL2810080.237Sarcophilus_harrisii
ENSG00000086504MRPL2810075.688ENSSFOG00015006866mrpl2810071.825Scleropages_formosus
ENSG00000086504MRPL2810066.514ENSSMAG00000013912mrpl2810064.286Scophthalmus_maximus
ENSG00000086504MRPL2810067.431ENSSDUG00000005764mrpl289964.940Seriola_dumerili
ENSG00000086504MRPL2810067.431ENSSLDG00000000409mrpl289964.940Seriola_lalandi_dorsalis
ENSG00000086504MRPL287678.378ENSSARG00000006277-9878.378Sorex_araneus
ENSG00000086504MRPL2810074.771ENSSPUG00000015322MRPL289673.750Sphenodon_punctatus
ENSG00000086504MRPL2810066.972ENSSPAG00000011153mrpl2810063.889Stegastes_partitus
ENSG00000086504MRPL2810085.052ENSSSCG00000007984MRPL289984.646Sus_scrofa
ENSG00000086504MRPL2810068.807ENSTRUG00000019877mrpl2810066.270Takifugu_rubripes
ENSG00000086504MRPL2810061.883ENSTNIG00000002347-10060.996Tetraodon_nigroviridis
ENSG00000086504MRPL2810073.394ENSTNIG00000007746mrpl2810069.841Tetraodon_nigroviridis
ENSG00000086504MRPL285689.344ENSTTRG00000009128-7889.600Tursiops_truncatus
ENSG00000086504MRPL2810087.629ENSUAMG00000015724MRPL289586.220Ursus_americanus
ENSG00000086504MRPL2810087.629ENSUMAG00000021029MRPL289986.614Ursus_maritimus
ENSG00000086504MRPL286488.571ENSVPAG00000004642MRPL285474.615Vicugna_pacos
ENSG00000086504MRPL285584.167ENSVVUG00000013414MRPL286275.287Vulpes_vulpes
ENSG00000086504MRPL2810072.477ENSXETG00000011564mrpl289969.170Xenopus_tropicalis
ENSG00000086504MRPL2810068.349ENSXCOG00000012655mrpl2810064.683Xiphophorus_couchianus
ENSG00000086504MRPL2810068.349ENSXMAG00000004293mrpl2810064.683Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.HDAFunction
GO:0003735structural constituent of ribosome21873635.IBAFunction
GO:0003735structural constituent of ribosome11543634.NASFunction
GO:0005515protein binding20601428.25416956.IPIFunction
GO:0005739mitochondrion28892042.IDAComponent
GO:0005743mitochondrial inner membrane-TASComponent
GO:0005761mitochondrial ribosome20601428.IDAComponent
GO:0005761mitochondrial ribosome11543634.NASComponent
GO:0005762mitochondrial large ribosomal subunit21873635.IBAComponent
GO:0005762mitochondrial large ribosomal subunit25278503.28892042.IDAComponent
GO:0005829cytosol-IDAComponent
GO:0006412translation11543634.NASProcess
GO:0070125mitochondrial translational elongation-TASProcess
GO:0070126mitochondrial translational termination-TASProcess

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