EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000089682 (Gene tree)
Gene ID: 55285
Gene Symbol: RBM41
Alias: FLJ11016
Full Name: RNA binding motif protein 41
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Minus strand
Length: 56,943 bases
Position: chrX:107,061,885-107,118,827
Accession: 25617
RBP type: canonical RBP
Summary: (RNA Binding Motif Protein 41) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and nucleotide binding. An important paralog of this gene is RNPC3.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000361565	RRM_1	PF00076.22	3.3e-09	1	1
ENSP00000361557	RRM_1	PF00076.22	3.4e-09	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & MCF7	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000434854	RBM41-203	680	-	ENSP00000405522	203 (aa)	-	H0Y6F9
ENST00000485676	RBM41-207	925	-	-	- (aa)	-	-
ENST00000495517	RBM41-208	3315	-	ENSP00000433251	311 (aa)	-	Q96IZ5
ENST00000471079	RBM41-204	1567	-	-	- (aa)	-	-
ENST00000474499	RBM41-205	332	-	-	- (aa)	-	-
ENST00000475556	RBM41-206	346	-	-	- (aa)	-	-
ENST00000372487	RBM41-202	2579	XM_011530980	ENSP00000361565	405 (aa)	XP_011529282	Q96IZ5
ENST00000372479	RBM41-201	1662	XM_011530981	ENSP00000361557	413 (aa)	XP_011529283	Q96IZ5

Gene Model

Click here to download ENSG00000089682's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000089682's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000089682	RBM41	99	96.517	ENSAMEG00000010490	RBM41	99	96.107	Ailuropoda_melanoleuca
ENSG00000089682	RBM41	89	49.198	ENSACIG00000014038	rbm41	93	42.619	Amphilophus_citrinellus
ENSG00000089682	RBM41	95	43.411	ENSAOCG00000020927	rbm41	96	42.857	Amphiprion_ocellaris
ENSG00000089682	RBM41	93	43.272	ENSAPEG00000001223	rbm41	96	42.347	Amphiprion_percula
ENSG00000089682	RBM41	90	48.663	ENSATEG00000022968	rbm41	98	41.032	Anabas_testudineus
ENSG00000089682	RBM41	88	43.158	ENSACAG00000014146	RBM41	80	43.947	Anolis_carolinensis
ENSG00000089682	RBM41	99	97.561	ENSANAG00000037624	RBM41	97	97.561	Aotus_nancymaae
ENSG00000089682	RBM41	90	48.691	ENSACLG00000024125	rbm41	97	42.166	Astatotilapia_calliptera
ENSG00000089682	RBM41	96	40.835	ENSAMXG00000007109	rbm41	95	39.671	Astyanax_mexicanus
ENSG00000089682	RBM41	100	95.400	ENSBTAG00000000955	RBM41	100	95.400	Bos_taurus
ENSG00000089682	RBM41	100	96.126	ENSCJAG00000007957	RBM41	100	96.126	Callithrix_jacchus
ENSG00000089682	RBM41	99	96.517	ENSCAFG00000017959	RBM41	99	95.864	Canis_familiaris
ENSG00000089682	RBM41	99	95.823	ENSCAFG00020006764	RBM41	98	95.823	Canis_lupus_dingo
ENSG00000089682	RBM41	100	95.157	ENSCHIG00000015945	RBM41	100	95.157	Capra_hircus
ENSG00000089682	RBM41	100	95.884	ENSTSYG00000006980	RBM41	100	95.884	Carlito_syrichta
ENSG00000089682	RBM41	96	96.410	ENSCPOG00000025052	RBM41	100	90.073	Cavia_porcellus
ENSG00000089682	RBM41	100	97.821	ENSCCAG00000028014	RBM41	100	97.821	Cebus_capucinus
ENSG00000089682	RBM41	100	98.789	ENSCATG00000020042	RBM41	100	98.789	Cercocebus_atys
ENSG00000089682	RBM41	100	93.086	ENSCLAG00000002330	RBM41	100	92.010	Chinchilla_lanigera
ENSG00000089682	RBM41	96	99.487	ENSCSAG00000009146	RBM41	93	93.240	Chlorocebus_sabaeus
ENSG00000089682	RBM41	96	62.245	ENSCPBG00000001728	RBM41	99	61.369	Chrysemys_picta_bellii
ENSG00000089682	RBM41	100	98.025	ENSCANG00000028836	RBM41	99	98.025	Colobus_angolensis_palliatus
ENSG00000089682	RBM41	99	93.500	ENSCGRG00001012295	Rbm41	100	90.315	Cricetulus_griseus_chok1gshd
ENSG00000089682	RBM41	99	92.500	ENSCGRG00000010545	Rbm41	100	84.439	Cricetulus_griseus_crigri
ENSG00000089682	RBM41	98	41.135	ENSCSEG00000010491	rbm41	97	42.029	Cynoglossus_semilaevis
ENSG00000089682	RBM41	98	41.667	ENSDARG00000054096	rbm41	99	41.568	Danio_rerio
ENSG00000089682	RBM41	99	94.802	ENSDNOG00000013865	RBM41	99	93.917	Dasypus_novemcinctus
ENSG00000089682	RBM41	96	95.385	ENSDORG00000008077	Rbm41	99	88.861	Dipodomys_ordii
ENSG00000089682	RBM41	68	97.561	ENSETEG00000019681	-	68	97.561	Echinops_telfairi
ENSG00000089682	RBM41	100	96.126	ENSECAG00000021846	RBM41	100	96.126	Equus_caballus
ENSG00000089682	RBM41	99	90.274	ENSEEUG00000006722	RBM41	100	89.268	Erinaceus_europaeus
ENSG00000089682	RBM41	98	39.041	ENSELUG00000007426	rbm41	93	39.229	Esox_lucius
ENSG00000089682	RBM41	98	96.212	ENSFCAG00000001982	RBM41	85	94.891	Felis_catus
ENSG00000089682	RBM41	96	59.126	ENSFALG00000011221	RBM41	90	59.126	Ficedula_albicollis
ENSG00000089682	RBM41	100	92.978	ENSFDAG00000020264	RBM41	100	92.978	Fukomys_damarensis
ENSG00000089682	RBM41	86	41.620	ENSFHEG00000006026	rbm41	91	41.620	Fundulus_heteroclitus
ENSG00000089682	RBM41	97	40.602	ENSGMOG00000005876	rbm41	99	40.602	Gadus_morhua
ENSG00000089682	RBM41	96	56.298	ENSGALG00000004832	RBM41	99	54.791	Gallus_gallus
ENSG00000089682	RBM41	94	44.000	ENSGAFG00000011066	rbm41	92	39.810	Gambusia_affinis
ENSG00000089682	RBM41	90	48.404	ENSGACG00000020842	rbm41	95	41.282	Gasterosteus_aculeatus
ENSG00000089682	RBM41	96	59.949	ENSGAGG00000015064	RBM41	96	59.250	Gopherus_agassizii
ENSG00000089682	RBM41	100	100.000	ENSGGOG00000006587	RBM41	100	100.000	Gorilla_gorilla
ENSG00000089682	RBM41	95	42.488	ENSHBUG00000014307	rbm41	97	42.227	Haplochromis_burtoni
ENSG00000089682	RBM41	99	94.264	ENSHGLG00000003803	RBM41	91	92.701	Heterocephalus_glaber_female
ENSG00000089682	RBM41	99	94.486	ENSHGLG00100007396	RBM41	97	94.486	Heterocephalus_glaber_male
ENSG00000089682	RBM41	96	35.075	ENSHCOG00000009614	rbm41	96	35.075	Hippocampus_comes
ENSG00000089682	RBM41	99	38.283	ENSIPUG00000007379	rbm41	91	38.283	Ictalurus_punctatus
ENSG00000089682	RBM41	98	95.718	ENSSTOG00000001604	RBM41	100	94.673	Ictidomys_tridecemlineatus
ENSG00000089682	RBM41	98	94.472	ENSJJAG00000010415	Rbm41	100	91.283	Jaculus_jaculus
ENSG00000089682	RBM41	95	41.727	ENSKMAG00000013436	rbm41	99	41.232	Kryptolebias_marmoratus
ENSG00000089682	RBM41	85	65.318	ENSLACG00000012336	RBM41	99	49.645	Latimeria_chalumnae
ENSG00000089682	RBM41	92	36.533	ENSLOCG00000014958	rbm41	97	35.859	Lepisosteus_oculatus
ENSG00000089682	RBM41	96	96.410	ENSLAFG00000028266	RBM41	99	89.425	Loxodonta_africana
ENSG00000089682	RBM41	100	98.765	ENSMFAG00000041338	RBM41	99	98.765	Macaca_fascicularis
ENSG00000089682	RBM41	98	98.762	ENSMMUG00000023172	RBM41	98	98.762	Macaca_mulatta
ENSG00000089682	RBM41	100	98.547	ENSMNEG00000009942	RBM41	100	98.547	Macaca_nemestrina
ENSG00000089682	RBM41	100	97.778	ENSMLEG00000030890	RBM41	99	97.778	Mandrillus_leucophaeus
ENSG00000089682	RBM41	96	41.324	ENSMAMG00000000581	rbm41	97	41.324	Mastacembelus_armatus
ENSG00000089682	RBM41	90	48.691	ENSMZEG00005011676	rbm41	95	42.453	Maylandia_zebra
ENSG00000089682	RBM41	74	53.115	ENSMGAG00000009663	RBM41	100	53.115	Meleagris_gallopavo
ENSG00000089682	RBM41	98	92.965	ENSMAUG00000016409	Rbm41	100	90.557	Mesocricetus_auratus
ENSG00000089682	RBM41	96	98.974	ENSMICG00000009750	RBM41	100	93.947	Microcebus_murinus
ENSG00000089682	RBM41	98	93.467	ENSMOCG00000008323	Rbm41	100	91.041	Microtus_ochrogaster
ENSG00000089682	RBM41	96	43.797	ENSMMOG00000014574	rbm41	99	44.020	Mola_mola
ENSG00000089682	RBM41	100	66.988	ENSMODG00000002312	RBM41	100	66.988	Monodelphis_domestica
ENSG00000089682	RBM41	95	42.824	ENSMALG00000010729	rbm41	97	41.920	Monopterus_albus
ENSG00000089682	RBM41	99	91.597	MGP_CAROLIEiJ_G0033447	Rbm41	99	91.597	Mus_caroli
ENSG00000089682	RBM41	98	93.467	ENSMUSG00000031433	Rbm41	100	87.409	Mus_musculus
ENSG00000089682	RBM41	98	93.467	MGP_PahariEiJ_G0031986	Rbm41	100	88.136	Mus_pahari
ENSG00000089682	RBM41	98	93.467	MGP_SPRETEiJ_G0034617	Rbm41	100	87.651	Mus_spretus
ENSG00000089682	RBM41	99	96.269	ENSMPUG00000003751	RBM41	85	95.620	Mustela_putorius_furo
ENSG00000089682	RBM41	99	94.030	ENSMLUG00000005943	RBM41	99	93.187	Myotis_lucifugus
ENSG00000089682	RBM41	98	94.975	ENSNGAG00000014004	Rbm41	100	86.041	Nannospalax_galili
ENSG00000089682	RBM41	90	48.691	ENSNBRG00000014480	rbm41	94	43.325	Neolamprologus_brichardi
ENSG00000089682	RBM41	100	99.506	ENSNLEG00000013861	RBM41	100	99.506	Nomascus_leucogenys
ENSG00000089682	RBM41	99	67.494	ENSMEUG00000002663	RBM41	100	67.233	Notamacropus_eugenii
ENSG00000089682	RBM41	96	95.897	ENSODEG00000010074	RBM41	100	91.768	Octodon_degus
ENSG00000089682	RBM41	96	44.802	ENSONIG00000013260	rbm41	100	44.802	Oreochromis_niloticus
ENSG00000089682	RBM41	96	96.410	ENSOCUG00000015937	RBM41	97	90.998	Oryctolagus_cuniculus
ENSG00000089682	RBM41	94	48.469	ENSORLG00000015367	rbm41	98	40.471	Oryzias_latipes
ENSG00000089682	RBM41	94	48.469	ENSORLG00020008056	rbm41	72	49.194	Oryzias_latipes_hni
ENSG00000089682	RBM41	94	49.490	ENSORLG00015014350	rbm41	98	42.963	Oryzias_latipes_hsok
ENSG00000089682	RBM41	95	41.584	ENSOMEG00000023816	rbm41	98	41.809	Oryzias_melastigma
ENSG00000089682	RBM41	99	93.532	ENSOGAG00000009280	RBM41	99	93.431	Otolemur_garnettii
ENSG00000089682	RBM41	99	95.522	ENSOARG00000018817	RBM41	94	95.134	Ovis_aries
ENSG00000089682	RBM41	100	100.000	ENSPPAG00000000213	RBM41	100	100.000	Pan_paniscus
ENSG00000089682	RBM41	100	95.884	ENSPPRG00000021500	RBM41	100	95.884	Panthera_pardus
ENSG00000089682	RBM41	100	100.000	ENSPTRG00000022158	RBM41	100	100.000	Pan_troglodytes
ENSG00000089682	RBM41	100	98.547	ENSPANG00000012935	RBM41	100	98.547	Papio_anubis
ENSG00000089682	RBM41	99	46.948	ENSPKIG00000008793	rbm41	99	40.583	Paramormyrops_kingsleyae
ENSG00000089682	RBM41	62	54.688	ENSPSIG00000003931	RBM41	97	54.688	Pelodiscus_sinensis
ENSG00000089682	RBM41	98	94.975	ENSPEMG00000015991	Rbm41	99	90.534	Peromyscus_maniculatus_bairdii
ENSG00000089682	RBM41	96	70.026	ENSPCIG00000007079	RBM41	100	69.697	Phascolarctos_cinereus
ENSG00000089682	RBM41	94	44.500	ENSPFOG00000000848	rbm41	93	39.618	Poecilia_formosa
ENSG00000089682	RBM41	80	42.105	ENSPLAG00000022761	rbm41	87	38.727	Poecilia_latipinna
ENSG00000089682	RBM41	94	44.500	ENSPMEG00000002394	rbm41	93	39.855	Poecilia_mexicana
ENSG00000089682	RBM41	94	44.500	ENSPREG00000013759	rbm41	90	38.916	Poecilia_reticulata
ENSG00000089682	RBM41	100	99.758	ENSPPYG00000020609	RBM41	100	99.758	Pongo_abelii
ENSG00000089682	RBM41	100	92.978	ENSPCAG00000003991	RBM41	100	92.978	Procavia_capensis
ENSG00000089682	RBM41	100	95.400	ENSPCOG00000014296	RBM41	100	95.400	Propithecus_coquereli
ENSG00000089682	RBM41	67	95.495	ENSPVAG00000001786	-	68	93.939	Pteropus_vampyrus
ENSG00000089682	RBM41	90	48.691	ENSPNYG00000012687	rbm41	95	43.499	Pundamilia_nyererei
ENSG00000089682	RBM41	98	40.682	ENSPNAG00000003395	rbm41	98	40.682	Pygocentrus_nattereri
ENSG00000089682	RBM41	100	88.378	ENSRNOG00000057622	Rbm41	100	88.378	Rattus_norvegicus
ENSG00000089682	RBM41	100	98.765	ENSRBIG00000030599	RBM41	99	98.786	Rhinopithecus_bieti
ENSG00000089682	RBM41	100	98.765	ENSRROG00000009201	RBM41	99	98.786	Rhinopithecus_roxellana
ENSG00000089682	RBM41	100	98.305	ENSSBOG00000030042	RBM41	100	98.305	Saimiri_boliviensis_boliviensis
ENSG00000089682	RBM41	99	69.802	ENSSHAG00000002285	RBM41	100	69.249	Sarcophilus_harrisii
ENSG00000089682	RBM41	96	40.774	ENSSFOG00015009956	rbm41	95	41.002	Scleropages_formosus
ENSG00000089682	RBM41	95	47.179	ENSSMAG00000014485	rbm41	98	41.148	Scophthalmus_maximus
ENSG00000089682	RBM41	97	41.609	ENSSDUG00000008808	rbm41	98	41.609	Seriola_dumerili
ENSG00000089682	RBM41	95	42.080	ENSSLDG00000002232	rbm41	97	41.589	Seriola_lalandi_dorsalis
ENSG00000089682	RBM41	100	91.283	ENSSARG00000004377	RBM41	100	91.283	Sorex_araneus
ENSG00000089682	RBM41	96	58.355	ENSSPUG00000018486	RBM41	96	58.355	Sphenodon_punctatus
ENSG00000089682	RBM41	90	48.936	ENSSPAG00000018885	rbm41	97	42.019	Stegastes_partitus
ENSG00000089682	RBM41	100	96.126	ENSSSCG00000012556	RBM41	100	96.126	Sus_scrofa
ENSG00000089682	RBM41	69	57.447	ENSTGUG00000006473	-	98	55.556	Taeniopygia_guttata
ENSG00000089682	RBM41	96	40.610	ENSTRUG00000009805	rbm41	98	40.610	Takifugu_rubripes
ENSG00000089682	RBM41	100	42.195	ENSTNIG00000004692	rbm41	98	42.195	Tetraodon_nigroviridis
ENSG00000089682	RBM41	99	96.314	ENSUAMG00000021897	RBM41	98	96.314	Ursus_americanus
ENSG00000089682	RBM41	100	95.884	ENSVPAG00000003647	RBM41	100	95.884	Vicugna_pacos
ENSG00000089682	RBM41	99	96.269	ENSVVUG00000009707	RBM41	85	95.620	Vulpes_vulpes
ENSG00000089682	RBM41	94	44.000	ENSXCOG00000018744	rbm41	91	39.853	Xiphophorus_couchianus
ENSG00000089682	RBM41	94	44.500	ENSXMAG00000015338	rbm41	94	39.573	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0005515	protein binding	16189514.21516116.25416956.	IPI	Function
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0030626	U12 snRNA binding	21873635.	IBA	Function
GO:0097157	pre-mRNA intronic binding	21873635.	IBA	Function