EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000090060 (Gene tree)
Gene ID
10914
Gene Symbol
PAPOLA
Alias
PAP
Full Name
poly(A) polymerase alpha
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
65,684 bases
Position
chr14:96,501,433-96,567,116
Accession
14981
RBP type
canonical RBP
Summary
The protein encoded by this gene belongs to the poly(A) polymerase family. It is required for the addition of adenosine residues for the creation of the 3'-poly(A) tail of mRNAs. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2011]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000450534PAP_RNA-bindPF04926.154.6e-2311
ENSP00000376716PAP_RNA-bindPF04926.151.7e-2211
ENSP00000216277PAP_RNA-bindPF04926.152.3e-2211
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
10742179The NMR structure of the 38 kDa U1A protein - PIE RNA complex reveals the basis of cooperativity in regulation of polyadenylation by human U1A protein.Nat Struct Biol2000 AprVarani L-
9742111Processivity of the Saccharomyces cerevisiae poly(A) polymerase requires interactions at the carboxyl-terminal RNA binding domain.Mol Cell Biol1998 OctZhelkovsky A-
7592899Structure-function relationships in the Saccharomyces cerevisiae poly(A) polymerase. Identification of a novel RNA binding site and a domain that interacts with specificity factor(s).J Biol Chem1995 Nov 3Zhelkovsky AM-
8164653Poly(A) polymerase contains multiple functional domains.Mol Cell Biol1994 MayRaabe T-
10361280Poly(A) polymerase I of Escherichia coli: characterization of the catalytic domain, an RNA binding site and regions for the interaction with proteins involved in mRNA degradation.Mol Microbiol1999 MayRaynal LC-
12083511Identification of new poly(A) polymerase-inhibitory proteins capable of regulating pre-mRNA polyadenylation.J Mol Biol2002 May 17Ko B-
15955317Entamoeba histolytica: cloning and expression of the poly(A) polymerase EhPAP.Exp Parasitol2005 JulGarcia-Vivas J-
14749727Human Fip1 is a subunit of CPSF that binds to U-rich RNA elements and stimulates poly(A) polymerase.EMBO J2004 Feb 11Kaufmann I-
19460348Antagonism between GLD-2 binding partners controls gamete sex.Dev Cell2009 MayKim KWdoi: 10.1016/j.devcel.2009.04.002.
23219533PARP1 represses PAP and inhibits polyadenylation during heat shock.Mol Cell2013 Jan 10Di Giammartino DCdoi: 10.1016/j.molcel.2012.11.005
20855596GLD-2/RNP-8 cytoplasmic poly(A) polymerase is a broad-spectrum regulator of the oogenesis program.Proc Natl Acad Sci U S A2010 Oct 5Kim KWdoi: 10.1073/pnas.1012611107
23840799The 25 kDa subunit of cleavage factor Im Is a RNA-binding protein that interacts with the poly(A) polymerase in Entamoeba histolytica.PLoS One2013 Jun 28Pezet-Valdez Mdoi: 10.1371/journal.pone.0067977
25896913Poly(A) Polymerase and the Nuclear Poly(A) Binding Protein, PABPN1, Coordinate the Splicing and Degradation of a Subset of Human Pre-mRNAs.Mol Cell Biol2015 JulMuniz Ldoi: 10.1128/MCB.00123-15
9087430Involvement of the carboxyl terminus of vertebrate poly(A) polymerase in U1A autoregulation and in the coupling of splicing and polyadenylation.Genes Dev1997 Mar 15Gunderson SI-
12697817Determinants within an 18-amino-acid U1A autoregulatory domain that uncouple cooperative RNA binding, inhibition of polyadenylation, and homodimerization.Mol Cell Biol2003 MayGuan F-
17949481Hfq stimulates the activity of the CCA-adding enzyme.BMC Mol Biol2007 Oct 18Scheibe M-
24146636The human nuclear poly(a)-binding protein promotes RNA hyperadenylation and decay.PLoS Genet2013Bresson SMdoi: 10.1371/journal.pgen.1003893
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000553357PAPOLA-203585-ENSP0000045257873 (aa)-H0YJZ9
ENST00000555626PAPOLA-2152272-ENSP00000450534475 (aa)-G3V2A0
ENST00000555021PAPOLA-211547--- (aa)--
ENST00000554887PAPOLA-210547--- (aa)--
ENST00000557320PAPOLA-2233264-ENSP00000450437285 (aa)-P51003
ENST00000554130PAPOLA-207848--- (aa)--
ENST00000554135PAPOLA-208735--- (aa)--
ENST00000392990PAPOLA-2022588XM_005267281ENSP00000376716724 (aa)XP_005267338G3XAH6
ENST00000557406PAPOLA-224450--- (aa)--
ENST00000555701PAPOLA-2161875--- (aa)--
ENST00000553689PAPOLA-2052267-ENSP00000451600111 (aa)-G3V457
ENST00000555508PAPOLA-214588--- (aa)--
ENST00000556248PAPOLA-218652--- (aa)--
ENST00000556459PAPOLA-220959-ENSP00000451757181 (aa)-H0YJL4
ENST00000555912PAPOLA-2172277--- (aa)--
ENST00000555131PAPOLA-212546--- (aa)--
ENST00000556619PAPOLA-221584-ENSP00000451267177 (aa)-G3V3I9
ENST00000557471PAPOLA-2251421-ENSP00000450812238 (aa)-A0A0C4DGK1
ENST00000555224PAPOLA-213534--- (aa)--
ENST00000553940PAPOLA-206454--- (aa)--
ENST00000554666PAPOLA-209558--- (aa)--
ENST00000556283PAPOLA-219644--- (aa)--
ENST00000556787PAPOLA-222806--- (aa)--
ENST00000216277PAPOLA-2014519-ENSP00000216277745 (aa)-P51003
ENST00000553461PAPOLA-204892-ENSP00000450564203 (aa)-H0YJ00
Gene Model
Click here to download ENSG00000090060's gene model file
Pathways
Pathway IDPathway NameSource
hsa03015mRNA surveillance pathwayKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000090060Platelet Function Tests1.2816700E-005-
ENSG00000090060Platelet Function Tests1.2737700E-005-
ENSG00000090060Child Development Disorders, Pervasive1.7736000E-006-
ENSG00000090060Child Development Disorders, Pervasive1.6903000E-005-
ENSG00000090060Myoglobin3.7930000E-005-
ENSG00000090060Suntan9E-819340012
ENSG00000090060Colonic Neoplasms1E-725866641
ENSG00000090060Disease-Free Survival1E-725866641
ENSG00000090060Cognition8E-624684796
ENSG00000090060Colonic Neoplasms4E-625866641
ENSG00000090060Survival Rate4E-625866641
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000090060's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000090060PAPOLA9483.158ENSG00000115421PAPOLG10081.197
ENSG00000090060PAPOLA9892.115ENSG00000218823PAPOLB9886.080
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000090060PAPOLA9997.715ENSAMEG00000014142PAPOLA9997.715Ailuropoda_melanoleuca
ENSG00000090060PAPOLA9796.390ENSAPLG00000006645PAPOLA9990.579Anas_platyrhynchos
ENSG00000090060PAPOLA9897.849ENSACAG00000013474PAPOLA9994.737Anolis_carolinensis
ENSG00000090060PAPOLA10099.597ENSANAG00000018274PAPOLA10099.597Aotus_nancymaae
ENSG00000090060PAPOLA9996.364ENSANAG00000027941-9891.760Aotus_nancymaae
ENSG00000090060PAPOLA9495.263ENSAMXG00000018141papola9985.099Astyanax_mexicanus
ENSG00000090060PAPOLA10097.514ENSBTAG00000004054PAPOLA10097.514Bos_taurus
ENSG00000090060PAPOLA10099.597ENSCJAG00000006512PAPOLA10099.597Callithrix_jacchus
ENSG00000090060PAPOLA10097.071ENSCAFG00000017783PAPOLA10097.071Canis_familiaris
ENSG00000090060PAPOLA10097.652ENSCAFG00020011550PAPOLA10097.652Canis_lupus_dingo
ENSG00000090060PAPOLA8289.157ENSCHIG00000009834-6698.148Capra_hircus
ENSG00000090060PAPOLA10097.181ENSCHIG00000025004-10097.181Capra_hircus
ENSG00000090060PAPOLA10096.421ENSTSYG00000012384PAPOLA9997.226Carlito_syrichta
ENSG00000090060PAPOLA10096.632ENSCPOG00000002648PAPOLA10093.826Cavia_porcellus
ENSG00000090060PAPOLA10099.789ENSCCAG00000025120PAPOLA10099.732Cebus_capucinus
ENSG00000090060PAPOLA100100.000ENSCATG00000018815PAPOLA10099.866Cercocebus_atys
ENSG00000090060PAPOLA9999.091ENSCLAG00000016342PAPOLA10097.790Chinchilla_lanigera
ENSG00000090060PAPOLA100100.000ENSCSAG00000010516PAPOLA10099.866Chlorocebus_sabaeus
ENSG00000090060PAPOLA9997.273ENSCHOG00000001115PAPOLA7283.110Choloepus_hoffmanni
ENSG00000090060PAPOLA9896.774ENSCPBG00000024125PAPOLA10092.627Chrysemys_picta_bellii
ENSG00000090060PAPOLA100100.000ENSCANG00000000159PAPOLA10094.616Colobus_angolensis_palliatus
ENSG00000090060PAPOLA9898.925ENSCGRG00001022693-10095.718Cricetulus_griseus_chok1gshd
ENSG00000090060PAPOLA10086.526ENSCGRG00001002732-9983.871Cricetulus_griseus_chok1gshd
ENSG00000090060PAPOLA10087.785ENSCGRG00001000229-9990.032Cricetulus_griseus_chok1gshd
ENSG00000090060PAPOLA10082.735ENSCGRG00000000257-10082.735Cricetulus_griseus_crigri
ENSG00000090060PAPOLA9486.316ENSCGRG00000001888-9680.191Cricetulus_griseus_crigri
ENSG00000090060PAPOLA9798.913ENSCGRG00000003664-10095.700Cricetulus_griseus_crigri
ENSG00000090060PAPOLA9264.516ENSCSEG00000001841-7153.734Cynoglossus_semilaevis
ENSG00000090060PAPOLA9493.158ENSDARG00000009585papola10069.867Danio_rerio
ENSG00000090060PAPOLA10086.316ENSDORG00000013415-10090.586Dipodomys_ordii
ENSG00000090060PAPOLA9983.580ENSETEG00000004889PAPOLA10083.445Echinops_telfairi
ENSG00000090060PAPOLA9492.105ENSELUG00000018972papola10068.966Esox_lucius
ENSG00000090060PAPOLA10098.343ENSFCAG00000006784PAPOLA10098.343Felis_catus
ENSG00000090060PAPOLA9796.739ENSFALG00000002547PAPOLA9887.337Ficedula_albicollis
ENSG00000090060PAPOLA9799.275ENSFDAG00000010370PAPOLA10095.973Fukomys_damarensis
ENSG00000090060PAPOLA10062.526ENSGMOG00000010209papola10065.863Gadus_morhua
ENSG00000090060PAPOLA9896.774ENSGALG00000033099PAPOLA10089.946Gallus_gallus
ENSG00000090060PAPOLA9463.158ENSGACG00000006142-10053.958Gasterosteus_aculeatus
ENSG00000090060PAPOLA9896.774ENSGAGG00000020500PAPOLA9994.760Gopherus_agassizii
ENSG00000090060PAPOLA100100.000ENSGGOG00000006287PAPOLA100100.000Gorilla_gorilla
ENSG00000090060PAPOLA10096.961ENSHGLG00000007909-10096.961Heterocephalus_glaber_female
ENSG00000090060PAPOLA10085.684ENSHGLG00000017457-10084.324Heterocephalus_glaber_female
ENSG00000090060PAPOLA9990.909ENSHGLG00000007467-10078.523Heterocephalus_glaber_female
ENSG00000090060PAPOLA9898.925ENSHGLG00100017273PAPOLA10096.823Heterocephalus_glaber_male
ENSG00000090060PAPOLA9494.211ENSIPUG00000005919papola10067.254Ictalurus_punctatus
ENSG00000090060PAPOLA9999.091ENSSTOG00000011471PAPOLA10098.066Ictidomys_tridecemlineatus
ENSG00000090060PAPOLA9798.913ENSJJAG00000024340Papola10096.533Jaculus_jaculus
ENSG00000090060PAPOLA9595.312ENSLACG00000018136PAPOLA9976.707Latimeria_chalumnae
ENSG00000090060PAPOLA9990.594ENSLOCG00000008632papola9965.824Lepisosteus_oculatus
ENSG00000090060PAPOLA9798.913ENSLAFG00000000946PAPOLA9996.631Loxodonta_africana
ENSG00000090060PAPOLA100100.000ENSMFAG00000001792PAPOLA10099.866Macaca_fascicularis
ENSG00000090060PAPOLA100100.000ENSMMUG00000018610PAPOLA10099.866Macaca_mulatta
ENSG00000090060PAPOLA100100.000ENSMNEG00000043747PAPOLA10099.866Macaca_nemestrina
ENSG00000090060PAPOLA100100.000ENSMLEG00000032066PAPOLA10099.866Mandrillus_leucophaeus
ENSG00000090060PAPOLA9297.849ENSMGAG00000013228-10088.854Meleagris_gallopavo
ENSG00000090060PAPOLA9899.283ENSMAUG00000017178Papola10095.994Mesocricetus_auratus
ENSG00000090060PAPOLA10098.343ENSMICG00000010347PAPOLA10098.343Microcebus_murinus
ENSG00000090060PAPOLA9899.283ENSMOCG00000021670Papola10095.856Microtus_ochrogaster
ENSG00000090060PAPOLA9998.182ENSMODG00000012887-10096.242Monodelphis_domestica
ENSG00000090060PAPOLA9993.636ENSMODG00000001969-9981.868Monodelphis_domestica
ENSG00000090060PAPOLA9899.283MGP_CAROLIEiJ_G0018093Papola10095.168Mus_caroli
ENSG00000090060PAPOLA9899.283ENSMUSG00000021111Papola10095.442Mus_musculus
ENSG00000090060PAPOLA9899.283MGP_PahariEiJ_G0029850Papola10095.442Mus_pahari
ENSG00000090060PAPOLA9899.283MGP_SPRETEiJ_G0018943Papola10095.580Mus_spretus
ENSG00000090060PAPOLA9999.091ENSMPUG00000003054PAPOLA10097.987Mustela_putorius_furo
ENSG00000090060PAPOLA9899.283ENSMLUG00000010922PAPOLA10095.570Myotis_lucifugus
ENSG00000090060PAPOLA9898.566ENSNGAG00000022172Papola10096.133Nannospalax_galili
ENSG00000090060PAPOLA9799.639ENSNLEG00000000625PAPOLA10094.681Nomascus_leucogenys
ENSG00000090060PAPOLA7786.029ENSMEUG00000007831-7485.714Notamacropus_eugenii
ENSG00000090060PAPOLA10095.368ENSOPRG00000007625PAPOLA10091.736Ochotona_princeps
ENSG00000090060PAPOLA9462.105ENSONIG00000001062-9654.202Oreochromis_niloticus
ENSG00000090060PAPOLA9798.195ENSOANG00000013812PAPOLA9993.075Ornithorhynchus_anatinus
ENSG00000090060PAPOLA9798.913ENSOCUG00000011531PAPOLA9994.616Oryctolagus_cuniculus
ENSG00000090060PAPOLA9999.091ENSOGAG00000004611PAPOLA10097.852Otolemur_garnettii
ENSG00000090060PAPOLA10097.450ENSOARG00000016579-10097.450Ovis_aries
ENSG00000090060PAPOLA100100.000ENSPPAG00000030505PAPOLA100100.000Pan_paniscus
ENSG00000090060PAPOLA10098.343ENSPPRG00000008616PAPOLA10098.343Panthera_pardus
ENSG00000090060PAPOLA10097.474ENSPTIG00000018852PAPOLA9998.336Panthera_tigris_altaica
ENSG00000090060PAPOLA100100.000ENSPTRG00000006704PAPOLA100100.000Pan_troglodytes
ENSG00000090060PAPOLA100100.000ENSPANG00000025582PAPOLA10099.866Papio_anubis
ENSG00000090060PAPOLA9495.263ENSPKIG00000014471papola10069.909Paramormyrops_kingsleyae
ENSG00000090060PAPOLA9896.774ENSPSIG00000014157PAPOLA8792.895Pelodiscus_sinensis
ENSG00000090060PAPOLA9898.925ENSPEMG00000000043Papola10095.994Peromyscus_maniculatus_bairdii
ENSG00000090060PAPOLA9999.091ENSPCIG00000013234PAPOLA10095.845Phascolarctos_cinereus
ENSG00000090060PAPOLA100100.000ENSPPYG00000006128PAPOLA10097.584Pongo_abelii
ENSG00000090060PAPOLA9499.474ENSPCAG00000004199PAPOLA10090.030Procavia_capensis
ENSG00000090060PAPOLA9899.283ENSPCOG00000022117PAPOLA9994.875Propithecus_coquereli
ENSG00000090060PAPOLA9898.925ENSPVAG00000013925PAPOLA10096.510Pteropus_vampyrus
ENSG00000090060PAPOLA9493.684ENSPNAG00000010467papola10070.201Pygocentrus_nattereri
ENSG00000090060PAPOLA9899.283ENSRNOG00000004827Papola10095.034Rattus_norvegicus
ENSG00000090060PAPOLA9997.507ENSRBIG00000038490PAPOLA10097.507Rhinopithecus_bieti
ENSG00000090060PAPOLA10099.789ENSRROG00000025545PAPOLA10099.732Rhinopithecus_roxellana
ENSG00000090060PAPOLA10099.579ENSSBOG00000024061PAPOLA10099.462Saimiri_boliviensis_boliviensis
ENSG00000090060PAPOLA9798.913ENSSHAG00000015211PAPOLA9995.957Sarcophilus_harrisii
ENSG00000090060PAPOLA9495.263ENSSFOG00015004431papola9984.991Scleropages_formosus
ENSG00000090060PAPOLA9466.492ENSSDUG00000018247-7257.851Seriola_dumerili
ENSG00000090060PAPOLA9897.849ENSSPUG00000005835PAPOLA10092.359Sphenodon_punctatus
ENSG00000090060PAPOLA10098.121ENSSSCG00000002505-10098.121Sus_scrofa
ENSG00000090060PAPOLA9796.739ENSTGUG00000012687PAPOLA9990.162Taeniopygia_guttata
ENSG00000090060PAPOLA9498.947ENSTBEG00000000194PAPOLA7588.043Tupaia_belangeri
ENSG00000090060PAPOLA9698.131ENSTTRG00000005717PAPOLA8098.701Tursiops_truncatus
ENSG00000090060PAPOLA9598.893ENSUAMG00000025737PAPOLA9899.289Ursus_americanus
ENSG00000090060PAPOLA10096.421ENSVPAG00000006464PAPOLA10097.170Vicugna_pacos
ENSG00000090060PAPOLA9999.091ENSVVUG00000028340PAPOLA10097.928Vulpes_vulpes
ENSG00000090060PAPOLA9893.907ENSXETG00000013949papola10082.819Xenopus_tropicalis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000287magnesium ion binding-ISSFunction
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0003723RNA binding-IEAFunction
GO:0004652polynucleotide adenylyltransferase activity21873635.IBAFunction
GO:0004652polynucleotide adenylyltransferase activity7590244.IDAFunction
GO:0004652polynucleotide adenylyltransferase activity-ISSFunction
GO:0004652polynucleotide adenylyltransferase activity-TASFunction
GO:0005515protein binding7590244.19224921.IPIFunction
GO:0005524ATP binding-ISSFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus8302877.TASComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005737cytoplasm8302877.TASComponent
GO:0006369termination of RNA polymerase II transcription-TASProcess
GO:0006378mRNA polyadenylation21873635.IBAProcess
GO:0006378mRNA polyadenylation7590244.19224921.IDAProcess
GO:0030145manganese ion binding-ISSFunction
GO:0031124mRNA 3'-end processing-TASProcess
GO:0031440regulation of mRNA 3'-end processing19224921.IDAProcess
GO:0043631RNA polyadenylation-ISSProcess

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us