EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000090905 (Gene tree)
Gene ID
27327
Gene Symbol
TNRC6A
Alias
CAGH26|KIAA1460|GW182|TNRC6
Full Name
trinucleotide repeat containing adaptor 6A
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
217,424 bases
Position
chr16:24,610,209-24,827,632
Accession
11969
RBP type
canonical RBP
Summary
This gene encodes a member of the trinucleotide repeat containing 6 protein family. The protein functions in post-transcriptional gene silencing through the RNA interference (RNAi) and microRNA pathways. The protein associates with messenger RNAs and Argonaute proteins in cytoplasmic bodies known as GW-bodies or P-bodies. Inhibiting expression of this gene delocalizes other GW-body proteins and impairs RNAi and microRNA-induced gene silencing. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000379144Ago_hookPF10427.91.2e-1811
ENSP00000326900Ago_hookPF10427.91.3e-1811
ENSP00000404278Ago_hookPF10427.91e-0711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
31037644Viral Regulation of RNA Granules in Infected Cells.Virol Sin2019 AprZhang Qdoi: 10.1007/s12250-019-00122-3
29726904RNA-binding Protein Trinucleotide repeat-containing 6A Regulates the Formation of Circular RNA 0006916, with Important Functions in Lung Cancer Cells.Carcinogenesis2018 May 3Dai Xdoi: 10.1093/carcin/bgy061
16284622Disruption of GW bodies impairs mammalian RNA interference.Nat Cell Biol2005 DecJakymiw A-
16177138A crucial role for GW182 and the DCP1:DCP2 decapping complex in miRNA-mediated gene silencing.RNA2005 NovRehwinkel J-
14598044Clinical and serological associations of autoantibodies to GW bodies and a novel cytoplasmic autoantigen GW182.J Mol Med (Berl)2003 DecEystathioy T-
17938239Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components.Genes Dev2007 Oct 15El-Shami M-
20976148The microRNA and messengerRNA profile of the RNA-induced silencing complex in human primary astrocyte and astrocytoma cells.PLoS One2010 Oct 18Moser JJdoi: 10.1371/journal.pone.0013445.
23535175Role of Rck-Pat1b binding in assembly of processing-bodies.RNA Biol2013 AprOzgur Sdoi: 10.4161/rna.24086
29080206Structural Dynamics of the GW182 Silencing Domain Including its RNA Recognition motif (RRM) Revealed by Hydrogen-Deuterium Exchange Mass Spectrometry.J Am Soc Mass Spectrom2018 JanCieplak-Rotowska MKdoi: 10.1007/s13361-017-1830-9
30997501TNRC6 proteins modulate hepatitis C virus replication by spatially regulating the binding of miR-122/Ago2 complexes to viral RNA.Nucleic Acids Res2019 Jul 9Li Ydoi: 10.1093/nar/gkz278.
31324450Multidomain Convergence of Argonaute during RISC Assembly Correlates with the Formation of Internal Water Clusters.Mol Cell2019 Jun 27Park MSdoi: 10.1016/j.molcel.2019.06.011
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000568903TNRC6A-215943--- (aa)--
ENST00000477487TNRC6A-2062740--- (aa)--
ENST00000569376TNRC6A-217610-ENSP0000045929796 (aa)-I3L218
ENST00000568750TNRC6A-213609-ENSP00000457273203 (aa)-H3BTQ1
ENST00000563201TNRC6A-210276--- (aa)--
ENST00000395799TNRC6A-2028438XM_017023144ENSP000003791441962 (aa)XP_016878633Q8NDV7
ENST00000569098TNRC6A-216587-ENSP00000456394160 (aa)-H3BRT3
ENST00000462400TNRC6A-2042550--- (aa)--
ENST00000450465TNRC6A-2033700XM_005255257ENSP00000404278906 (aa)XP_005255314H7C269
ENST00000464539TNRC6A-2051853--- (aa)--
ENST00000561726TNRC6A-208543--- (aa)--
ENST00000491718TNRC6A-2077956-ENSP0000046068840 (aa)-I3L3S5
ENST00000567232TNRC6A-212523--- (aa)--
ENST00000562829TNRC6A-209277--- (aa)--
ENST00000568806TNRC6A-214298--- (aa)--
ENST00000566108TNRC6A-211454--- (aa)--
ENST00000315183TNRC6A-2018303XM_017023150ENSP000003269001913 (aa)XP_016878639Q8NDV7
ENST00000569634TNRC6A-218552--- (aa)--
Gene Model
Click here to download ENSG00000090905's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000090905Diabetes Mellitus, Type 25E-623386860
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000090905rs80450641624664268?Alzheimer's disease (cognitive decline)23535033unit decrease0.21EFO_0000249
ENSG00000090905rs171770781624799360?Type 2 diabetes (dietary heme iron intake interaction)23386860[NR] unit increase0.83EFO_0001360|EFO_0008355
ENSG00000090905rs116398561624777324ASystolic blood pressure27618448[0.22-0.46] unit decrease0.34EFO_0006335
ENSG00000090905rs116398561624777324APulse pressure27618448[0.15-0.31] unit decrease0.23EFO_0005763
ENSG00000090905rs341726511624755520TIntelligence (MTAG)29326435[0.014-0.027] unit decrease0.0205231EFO_0004337
ENSG00000090905rs71888731624715743AIntelligence (MTAG)29326435[0.013-0.025] unit increase0.01899372EFO_0004337
ENSG00000090905rs18624511624792299ACognitive performance30038396[0.014-0.026] unit decrease0.0202EFO_0008354
ENSG00000090905rs285124621624700485CEducational attainment (MTAG)30038396[0.009-0.014] unit increase0.0115EFO_0004784
ENSG00000090905rs779895681624680327CSelf-reported math ability (MTAG)30038396[0.008-0.0162] unit decrease0.0121EFO_0004875
ENSG00000090905rs285124621624700485CHighest math class taken (MTAG)30038396[0.0074-0.014] unit increase0.0107EFO_0004875
ENSG00000090905rs18624511624792299ACognitive performance (MTAG)30038396[0.013-0.023] unit decrease0.0177EFO_0008354
ENSG00000090905rs72022521624730365TExperiencing mood swings29500382z score decrease5.46EFO_0008475
ENSG00000090905rs341726511624755520TGeneral cognitive ability29844566z-score decrease6.059EFO_0004337
ENSG00000090905rs341726511624755520TIntelligence29942086z-score decrease7.122EFO_0004337
ENSG00000090905rs727686421624699893TIntelligence29942086z-score decrease5.667EFO_0004337
ENSG00000090905rs71888731624715743AIntelligence29942086z-score increase5.605EFO_0004337
ENSG00000090905rs285124621624700485CEducational attainment (years of education)30038396[0.0085-0.0139] unit increase0.0112EFO_0004784
ENSG00000090905rs71888731624715743?Educational attainment (years of education)30595370EFO_0004784
ENSG00000090905rs1129279561624712680?Menarche (age at onset)30595370EFO_0004703
ENSG00000090905rs72042811624773154?Body mass index30595370EFO_0004340
ENSG00000090905rs127086651624716906?Macular thickness30535121[0.27-0.57] unit decrease0.422EFO_0008375
ENSG00000090905rs71888731624715743AEducational attainment (years of education)30038396[0.0082-0.0136] unit increase0.0109EFO_0004784
ENSG00000090905rs727686261624681727AAlcohol consumption (drinks per week)30643258[0.021-0.04] unit increase0.030120945EFO_0007878
ENSG00000090905rs21887171624718909?Systolic blood pressure30595370EFO_0006335
ENSG00000090905rs71888731624715743?Smoking status30595370EFO_0006527
ENSG00000090905rs129304811624764117GAge of smoking initiation (MTAG)30643251[0.0075-0.014] unit increase0.0107512EFO_0005670
ENSG00000090905rs171770781624799360TAlcohol consumption (drinks per week) (MTAG)30643251[0.017-0.027] unit decrease0.0220624EFO_0007878
ENSG00000090905rs127086651624716906GSmoking cessation (MTAG)30643251[0.0071-0.0138] unit increase0.0104373EFO_0004319
ENSG00000090905rs2005341624741320GPulse pressure30578418[0.12-0.23] mmHg increase0.1758EFO_0005763
ENSG00000090905rs21887171624718909TSystolic blood pressure30578418[0.24-0.42] mmHg decrease0.3316EFO_0006335
ENSG00000090905rs2005411624721820ASystolic blood pressure27841878unit decrease0.281EFO_0006335
ENSG00000090905rs2005411624721820APulse pressure27841878unit decrease0.175EFO_0005763
ENSG00000090905rs71888731624715743GSmoking initiation (ever regular vs never regular) (MTAG)30643251[0.0076-0.012] unit increase0.00979102EFO_0006527
ENSG00000090905rs71888731624715743GSmoking initiation (ever regular vs never regular)30643251[0.015-0.025] unit increase0.020295778EFO_0006527
ENSG00000090905rs171770781624799360TAlcohol consumption (drinks per week)30643251[0.016-0.028] unit decrease0.02231549EFO_0007878
ENSG00000090905rs2005281624747810?Chronic obstructive pulmonary disease or high blood pressure (pleiotropy)30940143EFO_0004325|EFO_0000341
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000090905's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000090905TNRC6A9965.000ENSG00000078687TNRC6C9844.295
ENSG00000090905TNRC6A10050.617ENSG00000100354TNRC6B9445.399
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000090905TNRC6A9896.554ENSAMEG00000009333TNRC6A10096.554Ailuropoda_melanoleuca
ENSG00000090905TNRC6A10092.547ENSAPLG00000009978TNRC6A10081.927Anas_platyrhynchos
ENSG00000090905TNRC6A9974.419ENSACAG00000011857TNRC6A10056.496Anolis_carolinensis
ENSG00000090905TNRC6A10098.675ENSANAG00000025252TNRC6A10098.675Aotus_nancymaae
ENSG00000090905TNRC6A9887.931ENSAMXG00000019919tnrc6a9956.818Astyanax_mexicanus
ENSG00000090905TNRC6A10095.452ENSBTAG00000017999TNRC6A10095.086Bos_taurus
ENSG00000090905TNRC6A10098.780ENSCJAG00000020677TNRC6A10098.780Callithrix_jacchus
ENSG00000090905TNRC6A9996.585ENSCAFG00000017531TNRC6A10096.585Canis_familiaris
ENSG00000090905TNRC6A9894.488ENSCAFG00020021160TNRC6A9995.079Canis_lupus_dingo
ENSG00000090905TNRC6A10095.034ENSCHIG00000019448TNRC6A10095.224Capra_hircus
ENSG00000090905TNRC6A10096.840ENSTSYG00000012711TNRC6A10096.840Carlito_syrichta
ENSG00000090905TNRC6A9996.128ENSCPOG00000036684TNRC6A10096.128Cavia_porcellus
ENSG00000090905TNRC6A10098.981ENSCCAG00000033664TNRC6A10098.981Cebus_capucinus
ENSG00000090905TNRC6A9998.896ENSCATG00000019284TNRC6A9998.896Cercocebus_atys
ENSG00000090905TNRC6A10092.002ENSCLAG00000010217TNRC6A10091.898Chinchilla_lanigera
ENSG00000090905TNRC6A10099.185ENSCSAG00000006561TNRC6A10099.185Chlorocebus_sabaeus
ENSG00000090905TNRC6A10095.000ENSCHOG00000009374TNRC6A9591.627Choloepus_hoffmanni
ENSG00000090905TNRC6A10092.500ENSCPBG00000001881TNRC6A9982.390Chrysemys_picta_bellii
ENSG00000090905TNRC6A10099.032ENSCANG00000041549TNRC6A10099.032Colobus_angolensis_palliatus
ENSG00000090905TNRC6A10094.723ENSCGRG00001015021Tnrc6a10094.619Cricetulus_griseus_chok1gshd
ENSG00000090905TNRC6A10094.375ENSCGRG00000013351Tnrc6a9993.410Cricetulus_griseus_crigri
ENSG00000090905TNRC6A10079.375ENSDARG00000079688tnrc6a9957.015Danio_rerio
ENSG00000090905TNRC6A10093.168ENSDNOG00000013989TNRC6A9993.538Dasypus_novemcinctus
ENSG00000090905TNRC6A9497.351ENSETEG00000014658TNRC6A9985.371Echinops_telfairi
ENSG00000090905TNRC6A10096.587ENSEASG00005017693TNRC6A10096.944Equus_asinus_asinus
ENSG00000090905TNRC6A10096.587ENSECAG00000025056TNRC6A10096.944Equus_caballus
ENSG00000090905TNRC6A9889.504ENSEEUG00000004530TNRC6A9989.504Erinaceus_europaeus
ENSG00000090905TNRC6A10095.107ENSFCAG00000025236TNRC6A10094.954Felis_catus
ENSG00000090905TNRC6A10092.547ENSFALG00000003757TNRC6A9979.829Ficedula_albicollis
ENSG00000090905TNRC6A10092.547ENSGALG00000006068TNRC6A9982.767Gallus_gallus
ENSG00000090905TNRC6A10092.547ENSGAGG00000023209TNRC6A9981.886Gopherus_agassizii
ENSG00000090905TNRC6A9999.384ENSGGOG00000005137TNRC6A9999.384Gorilla_gorilla
ENSG00000090905TNRC6A10072.466ENSHGLG00000007368-9971.996Heterocephalus_glaber_female
ENSG00000090905TNRC6A9994.022ENSHGLG00000012474-10093.970Heterocephalus_glaber_female
ENSG00000090905TNRC6A9993.498ENSHGLG00100012496-10093.445Heterocephalus_glaber_male
ENSG00000090905TNRC6A9996.589ENSSTOG00000023394TNRC6A9996.589Ictidomys_tridecemlineatus
ENSG00000090905TNRC6A10083.125ENSLACG00000006277TNRC6A10070.258Latimeria_chalumnae
ENSG00000090905TNRC6A10085.625ENSLOCG00000005517tnrc6a9383.223Lepisosteus_oculatus
ENSG00000090905TNRC6A10094.375ENSLAFG00000004209TNRC6A9994.641Loxodonta_africana
ENSG00000090905TNRC6A10095.000ENSMFAG00000003824TNRC6A9997.815Macaca_fascicularis
ENSG00000090905TNRC6A10098.930ENSMMUG00000020428TNRC6A10098.930Macaca_mulatta
ENSG00000090905TNRC6A10098.882ENSMNEG00000034854TNRC6A10098.882Macaca_nemestrina
ENSG00000090905TNRC6A10095.113ENSMLEG00000042737TNRC6A9995.113Mandrillus_leucophaeus
ENSG00000090905TNRC6A10092.547ENSMGAG00000006455TNRC6A9980.586Meleagris_gallopavo
ENSG00000090905TNRC6A10094.410ENSMAUG00000012750Tnrc6a10094.410Mesocricetus_auratus
ENSG00000090905TNRC6A10097.910ENSMICG00000030685TNRC6A10097.910Microcebus_murinus
ENSG00000090905TNRC6A10094.929ENSMOCG00000000152Tnrc6a10094.668Microtus_ochrogaster
ENSG00000090905TNRC6A10081.183ENSMODG00000016348TNRC6A9981.805Monodelphis_domestica
ENSG00000090905TNRC6A10095.000MGP_CAROLIEiJ_G0030425Tnrc6a10094.639Mus_caroli
ENSG00000090905TNRC6A10095.000ENSMUSG00000052707Tnrc6a9994.996Mus_musculus
ENSG00000090905TNRC6A10095.000MGP_PahariEiJ_G0013635Tnrc6a10095.282Mus_pahari
ENSG00000090905TNRC6A10095.000MGP_SPRETEiJ_G0031539Tnrc6a10094.996Mus_spretus
ENSG00000090905TNRC6A10094.375ENSMPUG00000012324TNRC6A10083.959Mustela_putorius_furo
ENSG00000090905TNRC6A10095.000ENSMLUG00000002701TNRC6A10092.662Myotis_lucifugus
ENSG00000090905TNRC6A9995.659ENSNGAG00000020702Tnrc6a10095.607Nannospalax_galili
ENSG00000090905TNRC6A9896.968ENSNLEG00000011851TNRC6A9996.968Nomascus_leucogenys
ENSG00000090905TNRC6A10093.750ENSMEUG00000015959-7789.480Notamacropus_eugenii
ENSG00000090905TNRC6A9699.254ENSOPRG00000005819TNRC6A9699.254Ochotona_princeps
ENSG00000090905TNRC6A10093.125ENSODEG00000012802TNRC6A9989.610Octodon_degus
ENSG00000090905TNRC6A10093.750ENSOANG00000007672TNRC6A9983.139Ornithorhynchus_anatinus
ENSG00000090905TNRC6A10093.168ENSOCUG00000004325TNRC6A10092.981Oryctolagus_cuniculus
ENSG00000090905TNRC6A9997.072ENSOGAG00000006666TNRC6A10097.072Otolemur_garnettii
ENSG00000090905TNRC6A10094.375ENSOARG00000017950TNRC6A9895.981Ovis_aries
ENSG00000090905TNRC6A9999.542ENSPPAG00000028379TNRC6A10099.542Pan_paniscus
ENSG00000090905TNRC6A10095.107ENSPPRG00000005861TNRC6A10094.954Panthera_pardus
ENSG00000090905TNRC6A10095.000ENSPTIG00000006346TNRC6A9994.595Panthera_tigris_altaica
ENSG00000090905TNRC6A9997.852ENSPTRG00000007898TNRC6A9997.852Pan_troglodytes
ENSG00000090905TNRC6A10096.743ENSPANG00000018523TNRC6A10096.743Papio_anubis
ENSG00000090905TNRC6A10080.625ENSPKIG00000012859tnrc6a9679.459Paramormyrops_kingsleyae
ENSG00000090905TNRC6A10092.547ENSPSIG00000003965TNRC6A10077.635Pelodiscus_sinensis
ENSG00000090905TNRC6A10095.000ENSPEMG00000016318Tnrc6a10094.505Peromyscus_maniculatus_bairdii
ENSG00000090905TNRC6A10093.750ENSPCIG00000012106TNRC6A10083.708Phascolarctos_cinereus
ENSG00000090905TNRC6A9998.981ENSPPYG00000007202TNRC6A10098.981Pongo_abelii
ENSG00000090905TNRC6A95100.000ENSPCAG00000008260TNRC6A94100.000Procavia_capensis
ENSG00000090905TNRC6A10095.668ENSPCOG00000010134TNRC6A10095.668Propithecus_coquereli
ENSG00000090905TNRC6A8971.126ENSPVAG00000012066TNRC6A9970.955Pteropus_vampyrus
ENSG00000090905TNRC6A10095.000ENSRNOG00000024737Tnrc6a10094.314Rattus_norvegicus
ENSG00000090905TNRC6A9999.018ENSRBIG00000014222TNRC6A10099.018Rhinopithecus_bieti
ENSG00000090905TNRC6A10098.879ENSRROG00000032360TNRC6A10098.879Rhinopithecus_roxellana
ENSG00000090905TNRC6A9897.755ENSSBOG00000036197TNRC6A10099.356Saimiri_boliviensis_boliviensis
ENSG00000090905TNRC6A10082.947ENSSHAG00000008811TNRC6A9984.160Sarcophilus_harrisii
ENSG00000090905TNRC6A10084.375ENSSFOG00015008920tnrc6a9963.759Scleropages_formosus
ENSG00000090905TNRC6A9977.434ENSSARG00000002479TNRC6A8983.333Sorex_araneus
ENSG00000090905TNRC6A10090.000ENSSPUG00000010525TNRC6A10078.835Sphenodon_punctatus
ENSG00000090905TNRC6A10098.675ENSSSCG00000038870TNRC6A10097.659Sus_scrofa
ENSG00000090905TNRC6A10093.125ENSTGUG00000006142TNRC6A10080.135Taeniopygia_guttata
ENSG00000090905TNRC6A10093.125ENSTBEG00000014965TNRC6A10094.575Tupaia_belangeri
ENSG00000090905TNRC6A10095.000ENSTTRG00000002008TNRC6A9398.058Tursiops_truncatus
ENSG00000090905TNRC6A9097.222ENSUAMG00000006656-9395.687Ursus_americanus
ENSG00000090905TNRC6A9998.564ENSUMAG00000008274TNRC6A10097.349Ursus_maritimus
ENSG00000090905TNRC6A9094.444ENSVPAG00000010764-5785.493Vicugna_pacos
ENSG00000090905TNRC6A9996.608ENSVVUG00000005380TNRC6A10096.591Vulpes_vulpes
ENSG00000090905TNRC6A10084.375ENSXETG00000030437TNRC6A9965.965Xenopus_tropicalis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000932P-body21873635.IBAComponent
GO:0000932P-body20616046.IDAComponent
GO:0003723RNA binding22681889.HDAFunction
GO:0005515protein binding19167051.19324964.19383768.19716330.21063388.21840310.21981923.22484317.23090477.24768540.25416956.26134560.28546213.28877994.IPIFunction
GO:0005654nucleoplasm21873635.IBAComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005794Golgi apparatus-IDAComponent
GO:0005829cytosol-TASComponent
GO:0007223Wnt signaling pathway, calcium modulating pathway-TASProcess
GO:0009267cellular response to starvation-IEAProcess
GO:0010628positive regulation of gene expression-TASProcess
GO:0010629negative regulation of gene expression-TASProcess
GO:0035068micro-ribonucleoprotein complex21873635.IBAComponent
GO:0035068micro-ribonucleoprotein complex17671087.IDAComponent
GO:0035194posttranscriptional gene silencing by RNA-TASProcess
GO:0035195gene silencing by miRNA21873635.IBAProcess
GO:0035195gene silencing by miRNA23172285.IMPProcess
GO:0035278miRNA mediated inhibition of translation17671087.IDAProcess
GO:0043231intracellular membrane-bounded organelle-IDAComponent
GO:0045652regulation of megakaryocyte differentiation-TASProcess
GO:0060213positive regulation of nuclear-transcribed mRNA poly(A) tail shortening21873635.IBAProcess
GO:0060964regulation of gene silencing by miRNA-TASProcess

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