EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000096080 (Gene tree)
Gene ID
55168
Gene Symbol
MRPS18A
Alias
FLJ10548|MRPS18-3
Full Name
mitochondrial ribosomal protein S18A
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
16,616 bases
Position
chr6:43,671,197-43,687,812
Accession
14515
RBP type
canonical RBP
Summary
Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 28S subunit protein that belongs to the ribosomal protein S18P family. The encoded protein is one of three that has significant sequence similarity to bacterial S18 proteins. The primary sequences of the three human mitochondrial S18 proteins are no more closely related to each other than they are to the prokaryotic S18 proteins. A pseudogene corresponding to this gene is found on chromosome 3p. Alternative splicing results in multiple transcript variants.[provided by RefSeq, Jul 2010]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000361206Ribosomal_S18PF01084.201.6e-1511
ENSP00000361188Ribosomal_S18PF01084.202.4e-1411
ENSP00000398679Ribosomal_S18PF01084.208.1e-1411
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000372133MRPS18A-2021062-ENSP00000361206196 (aa)-Q9NVS2
ENST00000372116MRPS18A-201785-ENSP00000361188127 (aa)-Q9NVS2
ENST00000427312MRPS18A-203803XM_006715134ENSP00000398679263 (aa)XP_006715197Q5QPA5
Gene Model
Click here to download ENSG00000096080's gene model file
Pathways
Pathway IDPathway NameSource
hsa03010RibosomeKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000096080Blood Glucose9.4320000E-005-
ENSG00000096080Arterial Pressure7.2158464E-005-
ENSG00000096080Prostate-Specific Antigen6E-1228139693
ENSG00000096080Vascular Endothelial Growth Factors2E-1726910538
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000096080's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000096080MRPS18A9987.302ENSAMEG00000012117MRPS18A10085.204Ailuropoda_melanoleuca
ENSG00000096080MRPS18A8764.943ENSACIG00000017782mrps18a8364.943Amphilophus_citrinellus
ENSG00000096080MRPS18A7568.421ENSAOCG00000005723mrps18a5568.421Amphiprion_ocellaris
ENSG00000096080MRPS18A10057.868ENSAPEG00000006971mrps18a9457.868Amphiprion_percula
ENSG00000096080MRPS18A8566.467ENSATEG00000003132mrps18a8066.467Anabas_testudineus
ENSG00000096080MRPS18A8170.440ENSAPLG00000016280MRPS18A10070.440Anas_platyrhynchos
ENSG00000096080MRPS18A9965.873ENSACAG00000000642MRPS18A10063.265Anolis_carolinensis
ENSG00000096080MRPS18A10093.878ENSANAG00000030889MRPS18A10093.878Aotus_nancymaae
ENSG00000096080MRPS18A10057.868ENSACLG00000008170mrps18a9457.868Astatotilapia_calliptera
ENSG00000096080MRPS18A8364.762ENSAMXG00000036348mrps18a8063.889Astyanax_mexicanus
ENSG00000096080MRPS18A5864.348ENSAMXG00000036055-7978.261Astyanax_mexicanus
ENSG00000096080MRPS18A9989.683ENSBTAG00000025571MRPS18A9688.372Bos_taurus
ENSG00000096080MRPS18A10092.857ENSCJAG00000017382MRPS18A10092.857Callithrix_jacchus
ENSG00000096080MRPS18A10085.039ENSCAFG00000001928MRPS18A10083.163Canis_familiaris
ENSG00000096080MRPS18A9984.921ENSCAFG00020012064MRPS18A8382.653Canis_lupus_dingo
ENSG00000096080MRPS18A9986.508ENSCHIG00000013039MRPS18A10082.143Capra_hircus
ENSG00000096080MRPS18A10090.551ENSTSYG00000001390MRPS18A10090.551Carlito_syrichta
ENSG00000096080MRPS18A7983.871ENSCAPG00000016029MRPS18A9583.871Cavia_aperea
ENSG00000096080MRPS18A9987.302ENSCPOG00000022949MRPS18A10085.714Cavia_porcellus
ENSG00000096080MRPS18A10093.367ENSCCAG00000021108MRPS18A10093.367Cebus_capucinus
ENSG00000096080MRPS18A10094.898ENSCATG00000012963MRPS18A10094.898Cercocebus_atys
ENSG00000096080MRPS18A9986.508ENSCLAG00000012929MRPS18A10084.694Chinchilla_lanigera
ENSG00000096080MRPS18A10094.898ENSCSAG00000012127MRPS18A10094.898Chlorocebus_sabaeus
ENSG00000096080MRPS18A9965.079ENSCPBG00000025243MRPS18A10062.755Chrysemys_picta_bellii
ENSG00000096080MRPS18A8234.356ENSCING00000024771-8234.356Ciona_intestinalis
ENSG00000096080MRPS18A8338.739ENSCSAVG00000009539-8938.037Ciona_savignyi
ENSG00000096080MRPS18A10094.898ENSCANG00000039873MRPS18A10094.898Colobus_angolensis_palliatus
ENSG00000096080MRPS18A8785.455ENSCGRG00001017882Mrps18a9778.333Cricetulus_griseus_chok1gshd
ENSG00000096080MRPS18A9958.730ENSCGRG00000000079Mrps18a10061.745Cricetulus_griseus_crigri
ENSG00000096080MRPS18A8562.500ENSCSEG00000019650mrps18a7964.072Cynoglossus_semilaevis
ENSG00000096080MRPS18A8467.470ENSCVAG00000006511mrps18a7967.470Cyprinodon_variegatus
ENSG00000096080MRPS18A8564.286ENSDARG00000024465mrps18a8065.476Danio_rerio
ENSG00000096080MRPS18A9988.889ENSDNOG00000035755MRPS18A9984.694Dasypus_novemcinctus
ENSG00000096080MRPS18A9991.270ENSDORG00000014583Mrps18a10087.245Dipodomys_ordii
ENSG00000096080MRPS18A7438.542FBgn0051450mRpS18A6539.806Drosophila_melanogaster
ENSG00000096080MRPS18A6193.590ENSETEG00000014171MRPS18A10071.892Echinops_telfairi
ENSG00000096080MRPS18A9985.714ENSEASG00005003485MRPS18A6484.659Equus_asinus_asinus
ENSG00000096080MRPS18A9984.921ENSECAG00000004870MRPS18A6483.721Equus_caballus
ENSG00000096080MRPS18A9159.444ENSELUG00000005253mrps18a8559.444Esox_lucius
ENSG00000096080MRPS18A10086.614ENSFCAG00000036031MRPS18A10086.614Felis_catus
ENSG00000096080MRPS18A9964.286ENSFALG00000011356MRPS18A10063.265Ficedula_albicollis
ENSG00000096080MRPS18A9985.714ENSFDAG00000012875MRPS18A9776.804Fukomys_damarensis
ENSG00000096080MRPS18A8268.323ENSFHEG00000009014mrps18a7768.323Fundulus_heteroclitus
ENSG00000096080MRPS18A8960.795ENSGMOG00000012493mrps18a8560.795Gadus_morhua
ENSG00000096080MRPS18A8869.643ENSGALG00000010296MRPS18A9770.213Gallus_gallus
ENSG00000096080MRPS18A8368.712ENSGAFG00000005211mrps18a8168.212Gambusia_affinis
ENSG00000096080MRPS18A8164.780ENSGACG00000013370mrps18a7767.000Gasterosteus_aculeatus
ENSG00000096080MRPS18A7668.919ENSGAGG00000017954MRPS18A10058.673Gopherus_agassizii
ENSG00000096080MRPS18A10097.959ENSGGOG00000006303-10097.959Gorilla_gorilla
ENSG00000096080MRPS18A10057.868ENSHBUG00000014682mrps18a9457.868Haplochromis_burtoni
ENSG00000096080MRPS18A9984.921ENSHGLG00000014356MRPS18A10082.143Heterocephalus_glaber_female
ENSG00000096080MRPS18A9984.921ENSHGLG00100010988MRPS18A10082.143Heterocephalus_glaber_male
ENSG00000096080MRPS18A8466.463ENSHCOG00000000856mrps18a7966.463Hippocampus_comes
ENSG00000096080MRPS18A9362.703ENSIPUG00000017406mrps18a8863.243Ictalurus_punctatus
ENSG00000096080MRPS18A9988.095ENSSTOG00000004490MRPS18A9786.822Ictidomys_tridecemlineatus
ENSG00000096080MRPS18A9985.714ENSJJAG00000006567Mrps18a10083.673Jaculus_jaculus
ENSG00000096080MRPS18A10059.296ENSKMAG00000014910mrps18a9459.296Kryptolebias_marmoratus
ENSG00000096080MRPS18A8664.000ENSLBEG00000003391mrps18a8364.000Labrus_bergylta
ENSG00000096080MRPS18A8948.295ENSLACG00000022160mrps18a8248.295Latimeria_chalumnae
ENSG00000096080MRPS18A9463.243ENSLOCG00000016008mrps18a8863.243Lepisosteus_oculatus
ENSG00000096080MRPS18A9981.890ENSLAFG00000001168MRPS18A10080.711Loxodonta_africana
ENSG00000096080MRPS18A10094.898ENSMFAG00000038311MRPS18A10094.898Macaca_fascicularis
ENSG00000096080MRPS18A10094.898ENSMMUG00000014749MRPS18A10094.898Macaca_mulatta
ENSG00000096080MRPS18A10094.388ENSMNEG00000044642MRPS18A10094.388Macaca_nemestrina
ENSG00000096080MRPS18A8196.835ENSMLEG00000041828MRPS18A10096.835Mandrillus_leucophaeus
ENSG00000096080MRPS18A8464.458ENSMAMG00000015478mrps18a7966.867Mastacembelus_armatus
ENSG00000096080MRPS18A10057.868ENSMZEG00005014925mrps18a9457.868Maylandia_zebra
ENSG00000096080MRPS18A9366.484ENSMGAG00000010915MRPS18A9566.484Meleagris_gallopavo
ENSG00000096080MRPS18A10088.189ENSMICG00000005062MRPS18A10088.189Microcebus_murinus
ENSG00000096080MRPS18A10075.000ENSMOCG00000015168-10075.000Microtus_ochrogaster
ENSG00000096080MRPS18A9984.921ENSMOCG00000021207-10082.143Microtus_ochrogaster
ENSG00000096080MRPS18A8160.194ENSMMOG00000015315mrps18a7160.577Mola_mola
ENSG00000096080MRPS18A8068.153ENSMMOG00000015248mrps18a7669.000Mola_mola
ENSG00000096080MRPS18A10079.528ENSMODG00000018952MRPS18A10065.690Monodelphis_domestica
ENSG00000096080MRPS18A8566.071ENSMALG00000017044mrps18a8167.114Monopterus_albus
ENSG00000096080MRPS18A9983.333MGP_CAROLIEiJ_G0021656Mrps18a10082.550Mus_caroli
ENSG00000096080MRPS18A9982.540ENSMUSG00000023967Mrps18a10081.879Mus_musculus
ENSG00000096080MRPS18A9982.540MGP_PahariEiJ_G0020648Mrps18a10081.879Mus_pahari
ENSG00000096080MRPS18A9982.540MGP_SPRETEiJ_G0022568Mrps18a10081.879Mus_spretus
ENSG00000096080MRPS18A9986.508ENSMPUG00000012868MRPS18A8384.184Mustela_putorius_furo
ENSG00000096080MRPS18A9991.270ENSMLUG00000017755MRPS18A10086.735Myotis_lucifugus
ENSG00000096080MRPS18A10084.184ENSNGAG00000020052Mrps18a10084.184Nannospalax_galili
ENSG00000096080MRPS18A8464.848ENSNBRG00000021152mrps18a7964.848Neolamprologus_brichardi
ENSG00000096080MRPS18A10097.449ENSNLEG00000003865MRPS18A10097.449Nomascus_leucogenys
ENSG00000096080MRPS18A10082.677ENSMEUG00000013986MRPS18A9766.540Notamacropus_eugenii
ENSG00000096080MRPS18A9987.302ENSOPRG00000007680MRPS18A9772.243Ochotona_princeps
ENSG00000096080MRPS18A9984.921ENSODEG00000015388MRPS18A10082.143Octodon_degus
ENSG00000096080MRPS18A8464.848ENSONIG00000000609mrps18a7964.848Oreochromis_niloticus
ENSG00000096080MRPS18A8181.761ENSOANG00000001955MRPS18A10081.761Ornithorhynchus_anatinus
ENSG00000096080MRPS18A9992.063ENSOCUG00000005544MRPS18A10088.776Oryctolagus_cuniculus
ENSG00000096080MRPS18A8464.458ENSORLG00000023864mrps18a8064.458Oryzias_latipes
ENSG00000096080MRPS18A8465.060ENSORLG00020002882mrps18a8065.060Oryzias_latipes_hni
ENSG00000096080MRPS18A8463.855ENSORLG00015022065mrps18a8063.855Oryzias_latipes_hsok
ENSG00000096080MRPS18A8466.265ENSOMEG00000018124mrps18a7966.265Oryzias_melastigma
ENSG00000096080MRPS18A9988.095ENSOGAG00000026551MRPS18A10086.224Otolemur_garnettii
ENSG00000096080MRPS18A9986.508ENSOARG00000008279MRPS18A10082.143Ovis_aries
ENSG00000096080MRPS18A10099.490ENSPPAG00000036291MRPS18A10099.490Pan_paniscus
ENSG00000096080MRPS18A10086.614ENSPPRG00000006429MRPS18A10086.614Panthera_pardus
ENSG00000096080MRPS18A10086.614ENSPTIG00000001653MRPS18A10086.614Panthera_tigris_altaica
ENSG00000096080MRPS18A10099.490ENSPTRG00000018209MRPS18A10099.490Pan_troglodytes
ENSG00000096080MRPS18A10094.898ENSPANG00000006967MRPS18A10094.898Papio_anubis
ENSG00000096080MRPS18A8467.879ENSPKIG00000012807mrps18a7267.066Paramormyrops_kingsleyae
ENSG00000096080MRPS18A7870.968ENSPSIG00000013672MRPS18A9952.155Pelodiscus_sinensis
ENSG00000096080MRPS18A6568.702ENSPMGG00000000493mrps18a7765.789Periophthalmus_magnuspinnatus
ENSG00000096080MRPS18A9987.302ENSPEMG00000000405Mrps18a10083.673Peromyscus_maniculatus_bairdii
ENSG00000096080MRPS18A8461.818ENSPMAG00000007012mrps18a9061.818Petromyzon_marinus
ENSG00000096080MRPS18A10078.571ENSPCIG00000024858MRPS18A10078.571Phascolarctos_cinereus
ENSG00000096080MRPS18A8166.875ENSPFOG00000009046mrps18a10066.875Poecilia_formosa
ENSG00000096080MRPS18A8565.476ENSPLAG00000011106mrps18a8065.476Poecilia_latipinna
ENSG00000096080MRPS18A8565.476ENSPMEG00000000736mrps18a8267.114Poecilia_mexicana
ENSG00000096080MRPS18A8467.470ENSPREG00000012172mrps18a8366.026Poecilia_reticulata
ENSG00000096080MRPS18A10097.959ENSPPYG00000017282MRPS18A10097.959Pongo_abelii
ENSG00000096080MRPS18A6992.045ENSPCAG00000004192MRPS18A9770.925Procavia_capensis
ENSG00000096080MRPS18A10092.126ENSPCOG00000014911MRPS18A10092.126Propithecus_coquereli
ENSG00000096080MRPS18A9888.800ENSPVAG00000002758MRPS18A9778.707Pteropus_vampyrus
ENSG00000096080MRPS18A10057.868ENSPNYG00000014753mrps18a9457.868Pundamilia_nyererei
ENSG00000096080MRPS18A8760.116ENSPNAG00000023462mrps18a8459.551Pygocentrus_nattereri
ENSG00000096080MRPS18A9983.333ENSRNOG00000019511Mrps18a10081.122Rattus_norvegicus
ENSG00000096080MRPS18A10095.408ENSRBIG00000028789MRPS18A10095.408Rhinopithecus_bieti
ENSG00000096080MRPS18A10094.898ENSRROG00000042368-10094.898Rhinopithecus_roxellana
ENSG00000096080MRPS18A10091.339ENSSBOG00000019943MRPS18A10091.339Saimiri_boliviensis_boliviensis
ENSG00000096080MRPS18A10079.592ENSSHAG00000015048-10079.592Sarcophilus_harrisii
ENSG00000096080MRPS18A9362.842ENSSFOG00015005628mrps18a8862.842Scleropages_formosus
ENSG00000096080MRPS18A8766.279ENSSMAG00000009353mrps18a8366.279Scophthalmus_maximus
ENSG00000096080MRPS18A6273.171ENSSDUG00000011655mrps18a7771.605Seriola_dumerili
ENSG00000096080MRPS18A6671.756ENSSLDG00000025435mrps18a7075.000Seriola_lalandi_dorsalis
ENSG00000096080MRPS18A10067.513ENSSPUG00000011517MRPS18A10067.513Sphenodon_punctatus
ENSG00000096080MRPS18A10061.929ENSSPAG00000000034mrps18a9461.929Stegastes_partitus
ENSG00000096080MRPS18A9987.302ENSSSCG00000001692MRPS18A10084.694Sus_scrofa
ENSG00000096080MRPS18A7668.919ENSTGUG00000008142MRPS18A10068.919Taeniopygia_guttata
ENSG00000096080MRPS18A8766.279ENSTRUG00000025134mrps18a8266.279Takifugu_rubripes
ENSG00000096080MRPS18A8765.698ENSTNIG00000016302mrps18a8265.698Tetraodon_nigroviridis
ENSG00000096080MRPS18A9976.984ENSTBEG00000004094MRPS18A9766.917Tupaia_belangeri
ENSG00000096080MRPS18A10072.222ENSTTRG00000006354MRPS18A9770.722Tursiops_truncatus
ENSG00000096080MRPS18A9986.508ENSUAMG00000013758MRPS18A10084.184Ursus_americanus
ENSG00000096080MRPS18A9985.714ENSUMAG00000005910MRPS18A10083.673Ursus_maritimus
ENSG00000096080MRPS18A9756.250ENSVVUG00000022444-8178.462Vulpes_vulpes
ENSG00000096080MRPS18A9984.921ENSVVUG00000029092-10082.143Vulpes_vulpes
ENSG00000096080MRPS18A9859.677ENSXETG00000003270mrps18a9563.333Xenopus_tropicalis
ENSG00000096080MRPS18A7863.399ENSXCOG00000007223mrps18a8165.359Xiphophorus_couchianus
ENSG00000096080MRPS18A8563.690ENSXMAG00000004867mrps18a8165.359Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003735structural constituent of ribosome21873635.IBAFunction
GO:0003735structural constituent of ribosome11402041.ISSFunction
GO:0003735structural constituent of ribosome11279123.NASFunction
GO:0005739mitochondrion28892042.IDAComponent
GO:0005743mitochondrial inner membrane-TASComponent
GO:0005762mitochondrial large ribosomal subunit28892042.IDAComponent
GO:0005763mitochondrial small ribosomal subunit21873635.IBAComponent
GO:0005763mitochondrial small ribosomal subunit11279123.25838379.IDAComponent
GO:0006412translation11279123.NASProcess
GO:0032543mitochondrial translation11402041.ISSProcess
GO:0070125mitochondrial translational elongation-TASProcess
GO:0070126mitochondrial translational termination-TASProcess
GO:0070181small ribosomal subunit rRNA binding21873635.IBAFunction

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us