EuRBPDB

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  • Description
  • RBDs
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000100109 (Gene tree)
Gene ID
24144
Gene Symbol
TFIP11
Alias
TIP39|DKFZP434B194|Spp382
Full Name
tuftelin interacting protein 11
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
21,281 bases
Position
chr22:26,491,225-26,512,505
Accession
17165
RBP type
canonical RBP
Summary
This gene encodes a protein component of the spliceosome that promotes the release of the lariat-intron during late-stage splicing through the recruitment of a pre-mRNA splicing factor called DEAH-box helicase 15. The encoded protein contains a G-patch domain, a hallmark of RNA-processing proteins, that binds DEAH-box helicase 15. This protein contains an atypical nuclear localization sequence as well as a nuclear speckle-targeting sequence, enabling it to localize to distinct speckled regions within the cell nucleus. Polymorphisms in this gene are associated with dental caries suggesting a role in amelogenesis. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2016]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000383892G-patchPF01585.238.6e-1611
ENSP00000384297G-patchPF01585.238.6e-1611
ENSP00000384421G-patchPF01585.238.6e-1611
ENSP00000385861G-patchPF01585.238.6e-1611
ENSP00000480171G-patchPF01585.238.6e-1611
ENSP00000394266G-patchPF01585.231.3e-0611

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
15868102Structural organization and cellular localization of tuftelin-interacting protein 11 (TFIP11).Cell Mol Life Sci2005 MayWen X-
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000496523TFIP11-216572--- (aa)--
ENST00000420242TFIP11-206525-ENSP0000039747586 (aa)-F6UKU9
ENST00000481357TFIP11-213561--- (aa)--
ENST00000405938TFIP11-2012896XM_024452194ENSP00000384297837 (aa)XP_024307962Q9UBB9
ENST00000455080TFIP11-209638-ENSP00000399347121 (aa)-F6XM96
ENST00000450493TFIP11-208571-ENSP00000394266190 (aa)-H0Y4U8
ENST00000418876TFIP11-205563-ENSP0000040497388 (aa)-F6SQZ1
ENST00000407431TFIP11-2032974-ENSP00000383892837 (aa)-Q9UBB9
ENST00000492137TFIP11-214923--- (aa)--
ENST00000440258TFIP11-207595-ENSP0000041184042 (aa)-F6UQ07
ENST00000619735TFIP11-2173402-ENSP00000480171837 (aa)-Q9UBB9
ENST00000479489TFIP11-212749--- (aa)--
ENST00000472918TFIP11-211571--- (aa)--
ENST00000464449TFIP11-210589--- (aa)--
ENST00000407690TFIP11-2043586-ENSP00000384421837 (aa)-Q9UBB9
ENST00000493698TFIP11-215555--- (aa)--
ENST00000407148TFIP11-2022789-ENSP00000385861837 (aa)-Q9UBB9
Gene Model
Click here to download ENSG00000100109's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000100109Blood Glucose4.4790000E-006-
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000100109's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000100109TFIP1110066.471ENSAPOG00000011350tfip1110067.057Acanthochromis_polyacanthus
ENSG00000100109TFIP1110096.894ENSAMEG00000018077TFIP1110096.894Ailuropoda_melanoleuca
ENSG00000100109TFIP1110066.469ENSACIG00000020016tfip1110067.219Amphilophus_citrinellus
ENSG00000100109TFIP1110067.536ENSAOCG00000014412tfip1110067.458Amphiprion_ocellaris
ENSG00000100109TFIP1110067.536ENSAPEG00000021837tfip1110067.458Amphiprion_percula
ENSG00000100109TFIP1110067.221ENSATEG00000006472tfip1110067.221Anabas_testudineus
ENSG00000100109TFIP118990.566ENSAPLG00000012229TFIP119990.566Anas_platyrhynchos
ENSG00000100109TFIP1110099.283ENSANAG00000036330TFIP1110099.283Aotus_nancymaae
ENSG00000100109TFIP1110067.494ENSACLG00000001959tfip1110067.296Astatotilapia_calliptera
ENSG00000100109TFIP1110070.930ENSAMXG00000018840tfip119966.040Astyanax_mexicanus
ENSG00000100109TFIP1110095.455ENSBTAG00000012288TFIP1110093.309Bos_taurus
ENSG00000100109TFIP119831.886WBGene00007412stip-19931.452Caenorhabditis_elegans
ENSG00000100109TFIP1110099.164ENSCJAG00000008628TFIP1110099.164Callithrix_jacchus
ENSG00000100109TFIP1110097.252ENSCAFG00000011741TFIP1110097.252Canis_familiaris
ENSG00000100109TFIP1110097.252ENSCAFG00020022398TFIP1110097.252Canis_lupus_dingo
ENSG00000100109TFIP1110095.455ENSCHIG00000017173TFIP1110093.190Capra_hircus
ENSG00000100109TFIP1110098.447ENSTSYG00000011768TFIP1110098.447Carlito_syrichta
ENSG00000100109TFIP1110096.591ENSCAPG00000014283TFIP1110091.756Cavia_aperea
ENSG00000100109TFIP1110096.591ENSCPOG00000000358TFIP1110096.535Cavia_porcellus
ENSG00000100109TFIP1110099.164ENSCCAG00000022675TFIP1110099.164Cebus_capucinus
ENSG00000100109TFIP11100100.000ENSCATG00000040954TFIP1110099.881Cercocebus_atys
ENSG00000100109TFIP1110097.727ENSCLAG00000007269TFIP1110096.774Chinchilla_lanigera
ENSG00000100109TFIP11100100.000ENSCSAG00000010084TFIP1110099.881Chlorocebus_sabaeus
ENSG00000100109TFIP1110095.455ENSCHOG00000008730TFIP118998.598Choloepus_hoffmanni
ENSG00000100109TFIP1110088.796ENSCPBG00000021598TFIP1110088.796Chrysemys_picta_bellii
ENSG00000100109TFIP119942.347ENSCING00000008698stip9842.155Ciona_intestinalis
ENSG00000100109TFIP119841.969ENSCSAVG00000002061-9841.484Ciona_savignyi
ENSG00000100109TFIP11100100.000ENSCANG00000002400TFIP1110099.881Colobus_angolensis_palliatus
ENSG00000100109TFIP1110095.455ENSCGRG00001013439Tfip1110092.115Cricetulus_griseus_chok1gshd
ENSG00000100109TFIP1110095.455ENSCGRG00000000420Tfip1110092.115Cricetulus_griseus_crigri
ENSG00000100109TFIP1110066.352ENSCSEG00000014082tfip1110066.078Cynoglossus_semilaevis
ENSG00000100109TFIP1110066.706ENSCVAG00000011674tfip1110066.352Cyprinodon_variegatus
ENSG00000100109TFIP1110066.279ENSDARG00000056932tfip1110066.114Danio_rerio
ENSG00000100109TFIP1110097.619ENSDNOG00000042556TFIP1110096.774Dasypus_novemcinctus
ENSG00000100109TFIP1110096.591ENSDORG00000006263Tfip1110094.385Dipodomys_ordii
ENSG00000100109TFIP119937.879FBgn0024191sip19934.717Drosophila_melanogaster
ENSG00000100109TFIP119854.515ENSEBUG00000015059tfip119856.567Eptatretus_burgeri
ENSG00000100109TFIP1110090.920ENSEASG00005014285-10090.920Equus_asinus_asinus
ENSG00000100109TFIP1110097.849ENSEASG00005009760-10097.849Equus_asinus_asinus
ENSG00000100109TFIP1110097.727ENSECAG00000016242-10097.611Equus_caballus
ENSG00000100109TFIP1110091.278ENSECAG00000004795-10091.278Equus_caballus
ENSG00000100109TFIP119980.423ENSEEUG00000015847TFIP1110085.658Erinaceus_europaeus
ENSG00000100109TFIP1110069.318ENSELUG00000022017tfip1110066.745Esox_lucius
ENSG00000100109TFIP1110068.182ENSELUG00000011596TFIP1110066.745Esox_lucius
ENSG00000100109TFIP1110096.774ENSFCAG00000031626TFIP1110096.774Felis_catus
ENSG00000100109TFIP1110088.902ENSFALG00000008481-10088.902Ficedula_albicollis
ENSG00000100109TFIP119976.190ENSFALG00000008853-10075.030Ficedula_albicollis
ENSG00000100109TFIP1110096.177ENSFDAG00000016663TFIP1110096.177Fukomys_damarensis
ENSG00000100109TFIP1110067.020ENSFHEG00000011548tfip1110067.098Fundulus_heteroclitus
ENSG00000100109TFIP1110068.182ENSGMOG00000004834tfip1110064.747Gadus_morhua
ENSG00000100109TFIP1110089.499ENSGALG00000005623TFIP1110089.367Gallus_gallus
ENSG00000100109TFIP1110065.680ENSGAFG00000012142tfip1110065.998Gambusia_affinis
ENSG00000100109TFIP119969.110ENSGACG00000009599tfip1110066.509Gasterosteus_aculeatus
ENSG00000100109TFIP1110088.439ENSGAGG00000008196TFIP1110088.439Gopherus_agassizii
ENSG00000100109TFIP11100100.000ENSGGOG00000004999TFIP11100100.000Gorilla_gorilla
ENSG00000100109TFIP1110067.612ENSHBUG00000009935tfip1110067.414Haplochromis_burtoni
ENSG00000100109TFIP1110097.013ENSHGLG00000008873TFIP1110097.013Heterocephalus_glaber_female
ENSG00000100109TFIP1110097.013ENSHGLG00100016817TFIP1110097.013Heterocephalus_glaber_male
ENSG00000100109TFIP1110071.264ENSHCOG00000015846tfip1110066.509Hippocampus_comes
ENSG00000100109TFIP1110066.279ENSIPUG00000011965tfip1110065.755Ictalurus_punctatus
ENSG00000100109TFIP1110095.455ENSSTOG00000013530TFIP119398.701Ictidomys_tridecemlineatus
ENSG00000100109TFIP1110066.078ENSKMAG00000013948tfip1110065.439Kryptolebias_marmoratus
ENSG00000100109TFIP1110067.217ENSLBEG00000014079tfip1110067.335Labrus_bergylta
ENSG00000100109TFIP1110080.000ENSLACG00000009243TFIP1110080.000Latimeria_chalumnae
ENSG00000100109TFIP119970.764ENSLOCG00000008684tfip119970.764Lepisosteus_oculatus
ENSG00000100109TFIP11100100.000ENSMFAG00000043406TFIP1110099.881Macaca_fascicularis
ENSG00000100109TFIP11100100.000ENSMMUG00000023446TFIP1110099.881Macaca_mulatta
ENSG00000100109TFIP119299.224ENSMNEG00000039522TFIP1110099.857Macaca_nemestrina
ENSG00000100109TFIP11100100.000ENSMLEG00000039426TFIP1110099.881Mandrillus_leucophaeus
ENSG00000100109TFIP1110070.115ENSMAMG00000013817tfip1110067.651Mastacembelus_armatus
ENSG00000100109TFIP1110067.494ENSMZEG00005016814tfip1110067.296Maylandia_zebra
ENSG00000100109TFIP1110086.516ENSMGAG00000006881TFIP1110086.380Meleagris_gallopavo
ENSG00000100109TFIP1110095.455ENSMAUG00000016136Tfip1110091.756Mesocricetus_auratus
ENSG00000100109TFIP1110098.864ENSMICG00000013732TFIP1110097.013Microcebus_murinus
ENSG00000100109TFIP1110096.591ENSMOCG00000021195Tfip1110092.473Microtus_ochrogaster
ENSG00000100109TFIP1110065.064ENSMMOG00000017940tfip1110065.335Mola_mola
ENSG00000100109TFIP1110084.588ENSMODG00000025040-10084.468Monodelphis_domestica
ENSG00000100109TFIP1110092.712ENSMODG00000010710TFIP1110092.712Monodelphis_domestica
ENSG00000100109TFIP1110067.616ENSMALG00000011938tfip1110067.651Monopterus_albus
ENSG00000100109TFIP1110095.506MGP_CAROLIEiJ_G0027562Tfip1110097.849Mus_caroli
ENSG00000100109TFIP1110095.506ENSMUSG00000029345Tfip1110097.849Mus_musculus
ENSG00000100109TFIP1110095.506MGP_PahariEiJ_G0024144-10097.849Mus_pahari
ENSG00000100109TFIP1110095.506MGP_SPRETEiJ_G0028560Tfip1110097.849Mus_spretus
ENSG00000100109TFIP1110096.591ENSMPUG00000013605TFIP119397.317Mustela_putorius_furo
ENSG00000100109TFIP1110097.372ENSMLUG00000008015TFIP1110097.372Myotis_lucifugus
ENSG00000100109TFIP1110095.455ENSNGAG00000001168Tfip1110092.959Nannospalax_galili
ENSG00000100109TFIP1110066.825ENSNBRG00000005227tfip1110067.219Neolamprologus_brichardi
ENSG00000100109TFIP11100100.000ENSNLEG00000007735TFIP1110099.044Nomascus_leucogenys
ENSG00000100109TFIP1110092.832ENSMEUG00000006642TFIP1110092.832Notamacropus_eugenii
ENSG00000100109TFIP117496.927ENSOPRG00000013740TFIP117496.927Ochotona_princeps
ENSG00000100109TFIP1110096.659ENSODEG00000017086TFIP1110096.659Octodon_degus
ENSG00000100109TFIP1110067.494ENSONIG00000013652tfip1110067.651Oreochromis_niloticus
ENSG00000100109TFIP1110097.619ENSOCUG00000006298TFIP1110094.869Oryctolagus_cuniculus
ENSG00000100109TFIP1110065.877ENSORLG00000008318tfip1110065.521Oryzias_latipes
ENSG00000100109TFIP1110066.785ENSORLG00020012182tfip1110066.430Oryzias_latipes_hni
ENSG00000100109TFIP1110066.785ENSORLG00015001303tfip1110066.430Oryzias_latipes_hsok
ENSG00000100109TFIP1110066.667ENSOMEG00000000088tfip1110065.485Oryzias_melastigma
ENSG00000100109TFIP119980.579ENSOGAG00000029400-9880.073Otolemur_garnettii
ENSG00000100109TFIP11100100.000ENSOGAG00000010584-10098.088Otolemur_garnettii
ENSG00000100109TFIP1110095.455ENSOARG00000001236TFIP1110091.756Ovis_aries
ENSG00000100109TFIP11100100.000ENSPPAG00000037529TFIP11100100.000Pan_paniscus
ENSG00000100109TFIP1110096.655ENSPPRG00000010373TFIP1110096.655Panthera_pardus
ENSG00000100109TFIP1110096.774ENSPTIG00000005731TFIP1110096.774Panthera_tigris_altaica
ENSG00000100109TFIP11100100.000ENSPTRG00000014196TFIP1110099.881Pan_troglodytes
ENSG00000100109TFIP11100100.000ENSPANG00000018711TFIP1110099.881Papio_anubis
ENSG00000100109TFIP1110071.591ENSPKIG00000024728tfip1110068.527Paramormyrops_kingsleyae
ENSG00000100109TFIP1110089.367ENSPSIG00000009979TFIP1110089.367Pelodiscus_sinensis
ENSG00000100109TFIP1110067.778ENSPMGG00000021616tfip1110062.574Periophthalmus_magnuspinnatus
ENSG00000100109TFIP1110096.591ENSPEMG00000009979Tfip1110092.354Peromyscus_maniculatus_bairdii
ENSG00000100109TFIP1110061.905ENSPMAG00000005546tfip1110058.446Petromyzon_marinus
ENSG00000100109TFIP1110092.593ENSPCIG00000020963TFIP1110092.593Phascolarctos_cinereus
ENSG00000100109TFIP1110066.194ENSPFOG00000016485tfip1110066.470Poecilia_formosa
ENSG00000100109TFIP119967.539ENSPLAG00000003258tfip1110066.588Poecilia_latipinna
ENSG00000100109TFIP1110066.272ENSPMEG00000008257tfip1110066.470Poecilia_mexicana
ENSG00000100109TFIP1110066.312ENSPREG00000001742tfip1110066.234Poecilia_reticulata
ENSG00000100109TFIP11100100.000ENSPPYG00000011666TFIP1110090.533Pongo_abelii
ENSG00000100109TFIP1110093.388ENSPCAG00000005912TFIP119399.003Procavia_capensis
ENSG00000100109TFIP1110097.727ENSPCOG00000027919TFIP1110097.611Propithecus_coquereli
ENSG00000100109TFIP1110067.376ENSPNYG00000018025tfip1110067.178Pundamilia_nyererei
ENSG00000100109TFIP1110068.539ENSPNAG00000015368tfip1110066.825Pygocentrus_nattereri
ENSG00000100109TFIP1110096.591ENSRNOG00000000663Tfip1110092.354Rattus_norvegicus
ENSG00000100109TFIP11100100.000ENSRBIG00000044444TFIP1110099.761Rhinopithecus_bieti
ENSG00000100109TFIP11100100.000ENSRROG00000034930TFIP1110099.761Rhinopithecus_roxellana
ENSG00000100109TFIP1110098.805ENSSBOG00000035111TFIP1110098.805Saimiri_boliviensis_boliviensis
ENSG00000100109TFIP1110092.832ENSSHAG00000014104TFIP1110092.832Sarcophilus_harrisii
ENSG00000100109TFIP1110068.359ENSSFOG00015013856tfip1110068.446Scleropages_formosus
ENSG00000100109TFIP119969.110ENSSMAG00000011179tfip1110067.958Scophthalmus_maximus
ENSG00000100109TFIP1110067.453ENSSDUG00000014159tfip1110067.217Seriola_dumerili
ENSG00000100109TFIP1110067.416ENSSLDG00000001011tfip119958.288Seriola_lalandi_dorsalis
ENSG00000100109TFIP118386.246ENSSARG00000007065TFIP1110086.246Sorex_araneus
ENSG00000100109TFIP119288.266ENSSPUG00000007618TFIP119888.266Sphenodon_punctatus
ENSG00000100109TFIP1110067.217ENSSPAG00000017719tfip1110067.296Stegastes_partitus
ENSG00000100109TFIP1110097.611ENSSSCG00000009962TFIP1110097.611Sus_scrofa
ENSG00000100109TFIP1110087.216ENSTGUG00000007710TFIP1110087.216Taeniopygia_guttata
ENSG00000100109TFIP1110067.416ENSTRUG00000016348tfip1110063.669Takifugu_rubripes
ENSG00000100109TFIP1110065.366ENSTNIG00000015914tfip1110065.805Tetraodon_nigroviridis
ENSG00000100109TFIP1110098.864ENSTBEG00000007895TFIP117497.959Tupaia_belangeri
ENSG00000100109TFIP1110090.909ENSTTRG00000009421TFIP116898.997Tursiops_truncatus
ENSG00000100109TFIP1110096.591ENSUAMG00000016248TFIP119396.399Ursus_americanus
ENSG00000100109TFIP1110096.591ENSUMAG00000015595TFIP1110095.102Ursus_maritimus
ENSG00000100109TFIP1110096.591ENSVVUG00000015797TFIP119794.482Vulpes_vulpes
ENSG00000100109TFIP119480.995ENSXETG00000003784tfip119980.995Xenopus_tropicalis
ENSG00000100109TFIP1110066.114ENSXCOG00000016947tfip1110066.312Xiphophorus_couchianus
ENSG00000100109TFIP1110066.154ENSXMAG00000007524tfip1110066.824Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000390spliceosomal complex disassembly21873635.IBAProcess
GO:0000390spliceosomal complex disassembly19103666.IMPProcess
GO:0000398mRNA splicing, via spliceosome11991638.ICProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0000784nuclear chromosome, telomeric region17389648.IDAComponent
GO:0003676nucleic acid binding-IEAFunction
GO:0005515protein binding17389648.21516116.24304693.25416956.25910212.26638075.26871637.27107012.IPIFunction
GO:0005654nucleoplasm-TASComponent
GO:0005681spliceosomal complex11991638.IDAComponent
GO:0005730nucleolus17389648.IDAComponent
GO:0005737cytoplasm-IEAComponent
GO:0006396RNA processing11991638.ICProcess
GO:0016607nuclear speck-IDAComponent
GO:0031012extracellular matrix-IEAComponent
GO:0031214biomineral tissue development-IEAProcess
GO:0031333negative regulation of protein complex assembly17389648.IDAProcess
GO:0031848protection from non-homologous end joining at telomere17389648.ICProcess
GO:0032091negative regulation of protein binding17389648.IDAProcess
GO:0071008U2-type post-mRNA release spliceosomal complex21873635.IBAComponent
GO:0071008U2-type post-mRNA release spliceosomal complex19103666.IDAComponent
GO:0071013catalytic step 2 spliceosome11991638.IDAComponent
GO:1904876negative regulation of DNA ligase activity17389648.ICProcess
GO:2001033negative regulation of double-strand break repair via nonhomologous end joining17389648.ISSProcess

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