EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000100227 (Gene tree)
Gene ID
84271
Gene Symbol
POLDIP3
Alias
PDIP46|KIAA1649|SKAR|PDIP3
Full Name
DNA polymerase delta interacting protein 3
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
31,242 bases
Position
chr22:42,583,721-42,614,962
Accession
23782
RBP type
canonical RBP
Summary
This gene encodes an RRM (RNA recognition motif)-containing protein that participates in the regulation of translation by recruiting ribosomal protein S6 kinase beta-1 to mRNAs. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000252116RRM_1PF00076.221.1e-0911
ENSP00000252115RRM_1PF00076.221.2e-0911
ENSP00000397927RRM_1PF00076.221.3e-0911
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
15341740SKAR is a specific target of S6 kinase 1 in cell growth control.Curr Biol2004 Sep 7Richardson CJ-
22900096Alteration of POLDIP3 splicing associated with loss of function of TDP-43 in tissues affected with ALS.PLoS One2012Shiga Adoi: 10.1371/journal.pone.0043120
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000463133POLDIP3-207563--- (aa)--
ENST00000445215POLDIP3-2043337-ENSP00000415234281 (aa)-F8WCX5
ENST00000491021POLDIP3-2081028--- (aa)--
ENST00000454057POLDIP3-206579XM_017029011ENSP00000408046189 (aa)XP_016884500F8WEE2
ENST00000252115POLDIP3-2013441XM_011530457ENSP00000252115421 (aa)-Q9BY77
ENST00000339677POLDIP3-202783-ENSP00000343060185 (aa)-Q6R954
ENST00000617178POLDIP3-2092006-ENSP00000482500229 (aa)-Q8WUT1
ENST00000451060POLDIP3-2053491-ENSP00000397927438 (aa)-F6VRR5
ENST00000348657POLDIP3-2033323XM_017029010ENSP00000252116392 (aa)XP_016884499Q9BY77
Gene Model
Click here to download ENSG00000100227's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000100227Longevity8E-627015805
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000100227rs1370912242586566CEducational attainment (years of education)30038396[0.0086-0.0168] unit decrease0.0127EFO_0004784
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000100227's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000100227POLDIP38745.416ENSAPOG00000021223poldip39746.358Acanthochromis_polyacanthus
ENSG00000100227POLDIP310092.399ENSAMEG00000009522POLDIP39892.399Ailuropoda_melanoleuca
ENSG00000100227POLDIP310049.176ENSACIG00000023100poldip310049.882Amphilophus_citrinellus
ENSG00000100227POLDIP310044.990ENSAOCG00000004142poldip39155.801Amphiprion_ocellaris
ENSG00000100227POLDIP310044.990ENSAPEG00000013658poldip39155.801Amphiprion_percula
ENSG00000100227POLDIP38744.681ENSATEG00000009633poldip39744.667Anabas_testudineus
ENSG00000100227POLDIP39575.931ENSAPLG00000005154POLDIP310075.931Anas_platyrhynchos
ENSG00000100227POLDIP310072.770ENSACAG00000003515POLDIP39872.770Anolis_carolinensis
ENSG00000100227POLDIP310098.337ENSANAG00000033566-10098.337Aotus_nancymaae
ENSG00000100227POLDIP38481.590ENSANAG00000024431-9684.488Aotus_nancymaae
ENSG00000100227POLDIP310045.437ENSACLG00000016753poldip38645.562Astatotilapia_calliptera
ENSG00000100227POLDIP38745.032ENSAMXG00000007939poldip39945.553Astyanax_mexicanus
ENSG00000100227POLDIP310094.898ENSBTAG00000016511POLDIP310094.898Bos_taurus
ENSG00000100227POLDIP310098.214ENSCJAG00000009628POLDIP310098.214Callithrix_jacchus
ENSG00000100227POLDIP310093.349ENSCAFG00000000959POLDIP310093.349Canis_familiaris
ENSG00000100227POLDIP310087.886ENSCAFG00020000227POLDIP310087.817Canis_lupus_dingo
ENSG00000100227POLDIP310094.774ENSCHIG00000020171POLDIP310094.774Capra_hircus
ENSG00000100227POLDIP310096.684ENSTSYG00000007189POLDIP310096.684Carlito_syrichta
ENSG00000100227POLDIP39586.327ENSCAPG00000006798POLDIP310086.595Cavia_aperea
ENSG00000100227POLDIP310087.204ENSCPOG00000019524POLDIP310087.441Cavia_porcellus
ENSG00000100227POLDIP310098.100ENSCCAG00000027969-10098.100Cebus_capucinus
ENSG00000100227POLDIP310082.742ENSCCAG00000011395-10082.033Cebus_capucinus
ENSG00000100227POLDIP310098.575ENSCATG00000029583POLDIP310098.575Cercocebus_atys
ENSG00000100227POLDIP310089.286ENSCLAG00000016864POLDIP310089.286Chinchilla_lanigera
ENSG00000100227POLDIP310098.812ENSCSAG00000005654POLDIP310098.812Chlorocebus_sabaeus
ENSG00000100227POLDIP310077.541ENSCPBG00000021819POLDIP38777.541Chrysemys_picta_bellii
ENSG00000100227POLDIP310098.812ENSCANG00000027664POLDIP310098.812Colobus_angolensis_palliatus
ENSG00000100227POLDIP310091.837ENSCGRG00001004211-10091.837Cricetulus_griseus_chok1gshd
ENSG00000100227POLDIP39591.935ENSCGRG00000009374-10091.935Cricetulus_griseus_crigri
ENSG00000100227POLDIP39644.654ENSCSEG00000007165poldip310043.888Cynoglossus_semilaevis
ENSG00000100227POLDIP38743.154ENSCVAG00000004370poldip39843.497Cyprinodon_variegatus
ENSG00000100227POLDIP39641.026ENSDARG00000099375poldip39842.360Danio_rerio
ENSG00000100227POLDIP310093.827ENSDNOG00000037211-10092.814Dasypus_novemcinctus
ENSG00000100227POLDIP310091.603ENSDORG00000006590Poldip310091.603Dipodomys_ordii
ENSG00000100227POLDIP310078.622ENSETEG00000018022POLDIP310078.622Echinops_telfairi
ENSG00000100227POLDIP310038.717ENSEBUG00000001181poldip39338.626Eptatretus_burgeri
ENSG00000100227POLDIP310092.637ENSEASG00005000795POLDIP310092.637Equus_asinus_asinus
ENSG00000100227POLDIP310092.399ENSECAG00000018350POLDIP310092.399Equus_caballus
ENSG00000100227POLDIP38192.667ENSEEUG00000001290POLDIP310072.928Erinaceus_europaeus
ENSG00000100227POLDIP310043.813ENSELUG00000009005poldip39043.912Esox_lucius
ENSG00000100227POLDIP310092.602ENSFCAG00000032029POLDIP310092.602Felis_catus
ENSG00000100227POLDIP310074.171ENSFALG00000011621POLDIP38674.408Ficedula_albicollis
ENSG00000100227POLDIP310087.173ENSFDAG00000019550POLDIP310087.173Fukomys_damarensis
ENSG00000100227POLDIP310050.360ENSFHEG00000006083poldip310050.952Fundulus_heteroclitus
ENSG00000100227POLDIP310049.654ENSGMOG00000006232poldip310051.152Gadus_morhua
ENSG00000100227POLDIP310075.118ENSGALG00000011863POLDIP310075.118Gallus_gallus
ENSG00000100227POLDIP310041.199ENSGAFG00000017465poldip310041.882Gambusia_affinis
ENSG00000100227POLDIP310047.761ENSGACG00000007224poldip310048.401Gasterosteus_aculeatus
ENSG00000100227POLDIP310076.832ENSGAGG00000014629POLDIP39676.832Gopherus_agassizii
ENSG00000100227POLDIP310099.287ENSGGOG00000014961POLDIP310099.287Gorilla_gorilla
ENSG00000100227POLDIP310045.276ENSHBUG00000021806poldip38245.562Haplochromis_burtoni
ENSG00000100227POLDIP310090.306ENSHGLG00000013156POLDIP310090.306Heterocephalus_glaber_female
ENSG00000100227POLDIP310090.306ENSHGLG00100009086POLDIP310090.306Heterocephalus_glaber_male
ENSG00000100227POLDIP310040.918ENSHCOG00000005823poldip39842.505Hippocampus_comes
ENSG00000100227POLDIP310047.733ENSIPUG00000000564poldip310048.449Ictalurus_punctatus
ENSG00000100227POLDIP39594.355ENSSTOG00000008230POLDIP310094.355Ictidomys_tridecemlineatus
ENSG00000100227POLDIP310090.816ENSJJAG00000018034Poldip310090.816Jaculus_jaculus
ENSG00000100227POLDIP310043.590ENSKMAG00000013839poldip310044.773Kryptolebias_marmoratus
ENSG00000100227POLDIP310092.874ENSLAFG00000014901POLDIP39892.874Loxodonta_africana
ENSG00000100227POLDIP310098.575ENSMFAG00000044670POLDIP310098.575Macaca_fascicularis
ENSG00000100227POLDIP310098.575ENSMMUG00000047046POLDIP310098.575Macaca_mulatta
ENSG00000100227POLDIP310098.337ENSMNEG00000037068POLDIP310098.337Macaca_nemestrina
ENSG00000100227POLDIP37871.166ENSMAMG00000009151poldip310071.166Mastacembelus_armatus
ENSG00000100227POLDIP310045.347ENSMZEG00005005201poldip310045.562Maylandia_zebra
ENSG00000100227POLDIP39574.690ENSMGAG00000011986POLDIP310074.690Meleagris_gallopavo
ENSG00000100227POLDIP39785.366ENSMAUG00000014002Poldip39985.366Mesocricetus_auratus
ENSG00000100227POLDIP310095.153ENSMICG00000041767POLDIP310095.153Microcebus_murinus
ENSG00000100227POLDIP310091.686ENSMOCG00000014101Poldip310091.686Microtus_ochrogaster
ENSG00000100227POLDIP38646.218ENSMMOG00000004982poldip38261.321Mola_mola
ENSG00000100227POLDIP39677.833ENSMODG00000006932-5777.833Monodelphis_domestica
ENSG00000100227POLDIP310090.736MGP_CAROLIEiJ_G0020093Poldip310090.736Mus_caroli
ENSG00000100227POLDIP310091.211ENSMUSG00000041815Poldip310091.211Mus_musculus
ENSG00000100227POLDIP310091.211MGP_PahariEiJ_G0020100Poldip310091.211Mus_pahari
ENSG00000100227POLDIP310091.211MGP_SPRETEiJ_G0020991Poldip310091.211Mus_spretus
ENSG00000100227POLDIP310091.924ENSMPUG00000016314POLDIP310091.924Mustela_putorius_furo
ENSG00000100227POLDIP39985.919ENSMLUG00000012408POLDIP39985.919Myotis_lucifugus
ENSG00000100227POLDIP310092.637ENSNGAG00000000210Poldip310092.637Nannospalax_galili
ENSG00000100227POLDIP310045.652ENSNBRG00000001837poldip310045.652Neolamprologus_brichardi
ENSG00000100227POLDIP310098.724ENSNLEG00000015950POLDIP310098.724Nomascus_leucogenys
ENSG00000100227POLDIP310079.858ENSMEUG00000013932POLDIP310079.858Notamacropus_eugenii
ENSG00000100227POLDIP310089.796ENSODEG00000014224POLDIP310089.796Octodon_degus
ENSG00000100227POLDIP310045.347ENSONIG00000008367poldip310045.347Oreochromis_niloticus
ENSG00000100227POLDIP39771.014ENSOANG00000011029POLDIP39871.014Ornithorhynchus_anatinus
ENSG00000100227POLDIP310089.549ENSOCUG00000016133POLDIP39989.552Oryctolagus_cuniculus
ENSG00000100227POLDIP310047.564ENSORLG00000014799poldip310047.806Oryzias_latipes
ENSG00000100227POLDIP310043.725ENSORLG00020006113poldip310042.596Oryzias_latipes_hni
ENSG00000100227POLDIP310044.153ENSORLG00015018234poldip310044.379Oryzias_latipes_hsok
ENSG00000100227POLDIP310042.369ENSOMEG00000007071poldip310042.169Oryzias_melastigma
ENSG00000100227POLDIP310094.774ENSOGAG00000008216POLDIP310094.774Otolemur_garnettii
ENSG00000100227POLDIP310094.537ENSOARG00000018993POLDIP310094.537Ovis_aries
ENSG00000100227POLDIP310099.525ENSPPAG00000036619POLDIP310099.525Pan_paniscus
ENSG00000100227POLDIP310092.637ENSPPRG00000021188POLDIP310092.637Panthera_pardus
ENSG00000100227POLDIP310092.637ENSPTIG00000021396POLDIP310092.637Panthera_tigris_altaica
ENSG00000100227POLDIP310099.525ENSPTRG00000014460POLDIP310099.525Pan_troglodytes
ENSG00000100227POLDIP310098.575ENSPANG00000007026POLDIP310098.575Papio_anubis
ENSG00000100227POLDIP39646.377ENSPKIG00000002188poldip39046.914Paramormyrops_kingsleyae
ENSG00000100227POLDIP39643.089ENSPKIG00000007231poldip39342.466Paramormyrops_kingsleyae
ENSG00000100227POLDIP39577.475ENSPSIG00000006347POLDIP310077.475Pelodiscus_sinensis
ENSG00000100227POLDIP310091.943ENSPEMG00000021065Poldip310091.943Peromyscus_maniculatus_bairdii
ENSG00000100227POLDIP310038.717ENSPMAG00000004894poldip39338.803Petromyzon_marinus
ENSG00000100227POLDIP310079.858ENSPCIG00000026194POLDIP310079.858Phascolarctos_cinereus
ENSG00000100227POLDIP310048.268ENSPFOG00000000926poldip39553.962Poecilia_formosa
ENSG00000100227POLDIP310048.951ENSPLAG00000005558poldip310049.292Poecilia_latipinna
ENSG00000100227POLDIP310043.714ENSPMEG00000018286poldip39552.128Poecilia_mexicana
ENSG00000100227POLDIP310041.929ENSPREG00000016505poldip310041.445Poecilia_reticulata
ENSG00000100227POLDIP310099.287ENSPPYG00000011899POLDIP310099.287Pongo_abelii
ENSG00000100227POLDIP310092.162ENSPCAG00000009424POLDIP310092.162Procavia_capensis
ENSG00000100227POLDIP310095.918ENSPCOG00000020271POLDIP310095.918Propithecus_coquereli
ENSG00000100227POLDIP310090.974ENSPVAG00000014131POLDIP310090.974Pteropus_vampyrus
ENSG00000100227POLDIP310045.437ENSPNYG00000020333poldip310045.562Pundamilia_nyererei
ENSG00000100227POLDIP310045.720ENSPNAG00000023036poldip310046.109Pygocentrus_nattereri
ENSG00000100227POLDIP310090.974ENSRNOG00000022877Poldip310090.974Rattus_norvegicus
ENSG00000100227POLDIP310098.575ENSRBIG00000041676POLDIP310098.575Rhinopithecus_bieti
ENSG00000100227POLDIP310098.575ENSRROG00000022379POLDIP310098.575Rhinopithecus_roxellana
ENSG00000100227POLDIP310097.862ENSSBOG00000021779-10097.862Saimiri_boliviensis_boliviensis
ENSG00000100227POLDIP310078.147ENSSBOG00000025315-10077.910Saimiri_boliviensis_boliviensis
ENSG00000100227POLDIP310077.488ENSSHAG00000005316POLDIP39877.488Sarcophilus_harrisii
ENSG00000100227POLDIP39649.585ENSSFOG00015012429-9750.312Scleropages_formosus
ENSG00000100227POLDIP310042.235ENSSFOG00015012582poldip310042.636Scleropages_formosus
ENSG00000100227POLDIP310049.157ENSSMAG00000004609poldip310049.034Scophthalmus_maximus
ENSG00000100227POLDIP310044.622ENSSDUG00000016881poldip39450.538Seriola_dumerili
ENSG00000100227POLDIP310044.643ENSSLDG00000024763poldip310044.444Seriola_lalandi_dorsalis
ENSG00000100227POLDIP39579.602ENSSARG00000011587POLDIP39579.602Sorex_araneus
ENSG00000100227POLDIP310075.059ENSSPUG00000005362POLDIP39675.059Sphenodon_punctatus
ENSG00000100227POLDIP310094.537ENSSSCG00000000039POLDIP310094.537Sus_scrofa
ENSG00000100227POLDIP310075.592ENSTGUG00000009622-9875.592Taeniopygia_guttata
ENSG00000100227POLDIP310049.403ENSTRUG00000006604poldip39959.155Takifugu_rubripes
ENSG00000100227POLDIP310049.351ENSTNIG00000010841poldip310049.134Tetraodon_nigroviridis
ENSG00000100227POLDIP310092.874ENSTBEG00000010978POLDIP310092.874Tupaia_belangeri
ENSG00000100227POLDIP39593.766ENSTTRG00000015129POLDIP310093.766Tursiops_truncatus
ENSG00000100227POLDIP310092.162ENSUAMG00000026181POLDIP310092.162Ursus_americanus
ENSG00000100227POLDIP39391.582ENSUMAG00000020385POLDIP39888.406Ursus_maritimus
ENSG00000100227POLDIP310093.349ENSVVUG00000002231POLDIP310093.349Vulpes_vulpes
ENSG00000100227POLDIP310061.261ENSXETG00000013412poldip310060.089Xenopus_tropicalis
ENSG00000100227POLDIP38746.617ENSXCOG00000015952poldip39546.565Xiphophorus_couchianus
ENSG00000100227POLDIP310041.459ENSXMAG00000006152poldip310041.651Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000346transcription export complex20844015.22928037.IDAComponent
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005515protein binding18423201.22928037.IPIFunction
GO:0005654nucleoplasm-TASComponent
GO:0005737cytoplasm18423201.TASComponent
GO:0005829cytosol-TASComponent
GO:0006405RNA export from nucleus-TASProcess
GO:0006406mRNA export from nucleus-TASProcess
GO:0016607nuclear speck18423201.IDAComponent
GO:0016973poly(A)+ mRNA export from nucleus22928037.IDAProcess
GO:0031124mRNA 3'-end processing-TASProcess
GO:0036464cytoplasmic ribonucleoprotein granule-IDAComponent
GO:0044877protein-containing complex binding18423201.IPIFunction
GO:0045727positive regulation of translation18423201.IMPProcess

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