EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000100319 (Gene tree)
Gene ID: 55954
Gene Symbol: ZMAT5
Alias: SNRNP20|ZC3H19
Full Name: zinc finger matrin-type 5
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Minus strand
Length: 36,113 bases
Position: chr22:29,730,956-29,767,068
Accession: 28046
RBP type: canonical RBP
Summary: (Zinc Finger Matrin-Type 5) is a Protein Coding gene. Among its related pathways are mRNA Splicing - Minor Pathway and mRNA Splicing - Major Pathway.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000344241	zf-U1	PF06220.12	1.1e-06	1	1
ENSP00000344241	zf-CCCH	PF00642.24	2.1e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000344318	ZMAT5-201	899	-	ENSP00000344241	170 (aa)	-	Q9UDW3
ENST00000489010	ZMAT5-202	2468	-	-	- (aa)	-	-

Gene Model

Click here to download ENSG00000100319's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000100319's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000100319	ZMAT5	100	57.865	ENSAPOG00000000944	zmat5	100	57.865	Acanthochromis_polyacanthus
ENSG00000100319	ZMAT5	100	85.000	ENSAMEG00000008059	ZMAT5	100	85.000	Ailuropoda_melanoleuca
ENSG00000100319	ZMAT5	74	64.286	ENSACIG00000015828	zmat5	100	54.190	Amphilophus_citrinellus
ENSG00000100319	ZMAT5	100	58.192	ENSAOCG00000003009	zmat5	100	58.192	Amphiprion_ocellaris
ENSG00000100319	ZMAT5	100	58.192	ENSAPEG00000011779	zmat5	100	58.192	Amphiprion_percula
ENSG00000100319	ZMAT5	100	51.667	ENSATEG00000020071	zmat5	100	53.409	Anabas_testudineus
ENSG00000100319	ZMAT5	100	52.000	ENSAPLG00000007232	ZMAT5	100	52.000	Anas_platyrhynchos
ENSG00000100319	ZMAT5	75	62.857	ENSACAG00000000796	ZMAT5	100	69.466	Anolis_carolinensis
ENSG00000100319	ZMAT5	100	99.412	ENSANAG00000032394	ZMAT5	100	99.412	Aotus_nancymaae
ENSG00000100319	ZMAT5	100	49.425	ENSAMXG00000006979	zmat5	100	49.425	Astyanax_mexicanus
ENSG00000100319	ZMAT5	100	94.118	ENSBTAG00000017890	ZMAT5	100	94.118	Bos_taurus
ENSG00000100319	ZMAT5	100	98.824	ENSCJAG00000021763	ZMAT5	100	98.824	Callithrix_jacchus
ENSG00000100319	ZMAT5	100	94.118	ENSCAFG00000012343	ZMAT5	100	94.118	Canis_familiaris
ENSG00000100319	ZMAT5	100	94.118	ENSCAFG00020000699	ZMAT5	100	94.118	Canis_lupus_dingo
ENSG00000100319	ZMAT5	100	78.824	ENSCHIG00000014766	ZMAT5	100	78.824	Capra_hircus
ENSG00000100319	ZMAT5	100	97.059	ENSTSYG00000032219	ZMAT5	100	97.059	Carlito_syrichta
ENSG00000100319	ZMAT5	100	80.588	ENSCAPG00000017916	ZMAT5	100	80.588	Cavia_aperea
ENSG00000100319	ZMAT5	100	94.706	ENSCPOG00000035759	ZMAT5	100	94.706	Cavia_porcellus
ENSG00000100319	ZMAT5	100	99.412	ENSCCAG00000027039	ZMAT5	100	99.412	Cebus_capucinus
ENSG00000100319	ZMAT5	100	100.000	ENSCATG00000041346	ZMAT5	100	100.000	Cercocebus_atys
ENSG00000100319	ZMAT5	100	94.706	ENSCLAG00000011728	ZMAT5	100	94.706	Chinchilla_lanigera
ENSG00000100319	ZMAT5	100	100.000	ENSCSAG00000009611	ZMAT5	100	100.000	Chlorocebus_sabaeus
ENSG00000100319	ZMAT5	100	71.176	ENSCPBG00000007737	ZMAT5	100	71.176	Chrysemys_picta_bellii
ENSG00000100319	ZMAT5	54	47.826	ENSCING00000024695	-	92	39.623	Ciona_intestinalis
ENSG00000100319	ZMAT5	78	39.552	ENSCSAVG00000011080	-	90	38.608	Ciona_savignyi
ENSG00000100319	ZMAT5	100	99.412	ENSCANG00000027205	ZMAT5	100	99.412	Colobus_angolensis_palliatus
ENSG00000100319	ZMAT5	100	95.294	ENSCGRG00001006990	Zmat5	100	95.294	Cricetulus_griseus_chok1gshd
ENSG00000100319	ZMAT5	100	95.294	ENSCGRG00000013989	Zmat5	100	95.294	Cricetulus_griseus_crigri
ENSG00000100319	ZMAT5	100	50.556	ENSCSEG00000015698	zmat5	100	53.073	Cynoglossus_semilaevis
ENSG00000100319	ZMAT5	100	51.397	ENSCVAG00000021521	zmat5	100	51.955	Cyprinodon_variegatus
ENSG00000100319	ZMAT5	100	49.425	ENSDARG00000035434	zmat5	100	49.425	Danio_rerio
ENSG00000100319	ZMAT5	100	91.765	ENSDNOG00000000899	ZMAT5	100	91.765	Dasypus_novemcinctus
ENSG00000100319	ZMAT5	100	95.882	ENSDORG00000005655	Zmat5	100	95.882	Dipodomys_ordii
ENSG00000100319	ZMAT5	52	36.364	FBgn0051922	CG31922	70	33.673	Drosophila_melanogaster
ENSG00000100319	ZMAT5	100	87.647	ENSETEG00000003789	ZMAT5	100	87.647	Echinops_telfairi
ENSG00000100319	ZMAT5	89	42.384	ENSEBUG00000015692	zmat5	69	42.384	Eptatretus_burgeri
ENSG00000100319	ZMAT5	100	95.294	ENSEASG00005010189	ZMAT5	100	95.294	Equus_asinus_asinus
ENSG00000100319	ZMAT5	100	95.294	ENSECAG00000017576	ZMAT5	100	95.294	Equus_caballus
ENSG00000100319	ZMAT5	100	85.294	ENSEEUG00000000936	ZMAT5	100	85.294	Erinaceus_europaeus
ENSG00000100319	ZMAT5	100	55.000	ENSELUG00000000943	zmat5	100	55.000	Esox_lucius
ENSG00000100319	ZMAT5	100	94.118	ENSFCAG00000004251	ZMAT5	100	94.118	Felis_catus
ENSG00000100319	ZMAT5	100	70.000	ENSFALG00000007011	ZMAT5	100	70.000	Ficedula_albicollis
ENSG00000100319	ZMAT5	100	94.118	ENSFDAG00000019792	ZMAT5	100	94.118	Fukomys_damarensis
ENSG00000100319	ZMAT5	100	52.273	ENSFHEG00000020879	zmat5	100	52.273	Fundulus_heteroclitus
ENSG00000100319	ZMAT5	96	51.807	ENSGMOG00000012163	zmat5	95	51.807	Gadus_morhua
ENSG00000100319	ZMAT5	100	73.529	ENSGALG00000008070	ZMAT5	100	73.529	Gallus_gallus
ENSG00000100319	ZMAT5	100	51.955	ENSGAFG00000009069	zmat5	100	52.514	Gambusia_affinis
ENSG00000100319	ZMAT5	82	57.143	ENSGACG00000016940	zmat5	94	56.173	Gasterosteus_aculeatus
ENSG00000100319	ZMAT5	100	70.588	ENSGAGG00000012370	ZMAT5	100	70.588	Gopherus_agassizii
ENSG00000100319	ZMAT5	100	100.000	ENSGGOG00000003792	ZMAT5	100	100.000	Gorilla_gorilla
ENSG00000100319	ZMAT5	100	53.073	ENSHBUG00000019402	zmat5	100	53.073	Haplochromis_burtoni
ENSG00000100319	ZMAT5	100	93.529	ENSHGLG00000018180	ZMAT5	100	93.529	Heterocephalus_glaber_female
ENSG00000100319	ZMAT5	100	91.765	ENSHGLG00100014927	ZMAT5	100	91.765	Heterocephalus_glaber_male
ENSG00000100319	ZMAT5	100	52.023	ENSHCOG00000001727	zmat5	100	52.023	Hippocampus_comes
ENSG00000100319	ZMAT5	75	60.630	ENSIPUG00000006633	zmat5	100	50.286	Ictalurus_punctatus
ENSG00000100319	ZMAT5	100	97.059	ENSSTOG00000005457	ZMAT5	100	97.059	Ictidomys_tridecemlineatus
ENSG00000100319	ZMAT5	100	53.672	ENSKMAG00000007209	zmat5	100	52.747	Kryptolebias_marmoratus
ENSG00000100319	ZMAT5	100	53.529	ENSLBEG00000017297	zmat5	100	53.529	Labrus_bergylta
ENSG00000100319	ZMAT5	100	54.023	ENSLACG00000001597	ZMAT5	100	54.023	Latimeria_chalumnae
ENSG00000100319	ZMAT5	100	55.172	ENSLOCG00000003675	zmat5	100	55.172	Lepisosteus_oculatus
ENSG00000100319	ZMAT5	100	88.235	ENSLAFG00000010823	ZMAT5	100	88.235	Loxodonta_africana
ENSG00000100319	ZMAT5	100	100.000	ENSMFAG00000040309	ZMAT5	100	100.000	Macaca_fascicularis
ENSG00000100319	ZMAT5	100	100.000	ENSMMUG00000040034	ZMAT5	100	100.000	Macaca_mulatta
ENSG00000100319	ZMAT5	100	100.000	ENSMNEG00000033419	ZMAT5	100	100.000	Macaca_nemestrina
ENSG00000100319	ZMAT5	100	100.000	ENSMLEG00000043289	ZMAT5	100	100.000	Mandrillus_leucophaeus
ENSG00000100319	ZMAT5	100	52.299	ENSMAMG00000011505	zmat5	100	52.299	Mastacembelus_armatus
ENSG00000100319	ZMAT5	100	53.073	ENSMZEG00005018406	zmat5	100	53.073	Maylandia_zebra
ENSG00000100319	ZMAT5	76	73.643	ENSMGAG00000009818	ZMAT5	100	73.643	Meleagris_gallopavo
ENSG00000100319	ZMAT5	100	95.882	ENSMAUG00000021576	Zmat5	100	95.882	Mesocricetus_auratus
ENSG00000100319	ZMAT5	100	96.471	ENSMICG00000027135	ZMAT5	100	96.471	Microcebus_murinus
ENSG00000100319	ZMAT5	100	95.294	ENSMOCG00000014203	Zmat5	100	95.294	Microtus_ochrogaster
ENSG00000100319	ZMAT5	100	53.977	ENSMMOG00000009336	zmat5	100	53.977	Mola_mola
ENSG00000100319	ZMAT5	100	76.471	ENSMODG00000009007	ZMAT5	100	76.471	Monodelphis_domestica
ENSG00000100319	ZMAT5	100	55.114	ENSMALG00000011581	zmat5	100	55.114	Monopterus_albus
ENSG00000100319	ZMAT5	100	92.941	ENSMUSG00000009076	Zmat5	100	92.941	Mus_musculus
ENSG00000100319	ZMAT5	100	85.876	ENSMPUG00000013253	ZMAT5	100	85.876	Mustela_putorius_furo
ENSG00000100319	ZMAT5	100	84.118	ENSMLUG00000017398	ZMAT5	100	84.118	Myotis_lucifugus
ENSG00000100319	ZMAT5	100	95.882	ENSNGAG00000019083	Zmat5	100	95.882	Nannospalax_galili
ENSG00000100319	ZMAT5	100	98.824	ENSNLEG00000003391	ZMAT5	100	98.824	Nomascus_leucogenys
ENSG00000100319	ZMAT5	100	54.118	ENSMEUG00000002484	ZMAT5	100	54.118	Notamacropus_eugenii
ENSG00000100319	ZMAT5	100	92.353	ENSODEG00000017389	ZMAT5	100	92.353	Octodon_degus
ENSG00000100319	ZMAT5	100	52.222	ENSONIG00000013964	zmat5	100	52.778	Oreochromis_niloticus
ENSG00000100319	ZMAT5	100	95.882	ENSOCUG00000005282	ZMAT5	100	95.882	Oryctolagus_cuniculus
ENSG00000100319	ZMAT5	99	53.107	ENSORLG00000008131	zmat5	99	53.143	Oryzias_latipes
ENSG00000100319	ZMAT5	99	53.107	ENSORLG00020017564	zmat5	99	53.143	Oryzias_latipes_hni
ENSG00000100319	ZMAT5	99	53.107	ENSORLG00015004714	zmat5	99	53.143	Oryzias_latipes_hsok
ENSG00000100319	ZMAT5	100	53.409	ENSOMEG00000002536	zmat5	100	53.409	Oryzias_melastigma
ENSG00000100319	ZMAT5	100	93.529	ENSOGAG00000016378	ZMAT5	100	93.529	Otolemur_garnettii
ENSG00000100319	ZMAT5	100	89.595	ENSOARG00000005488	ZMAT5	100	89.595	Ovis_aries
ENSG00000100319	ZMAT5	100	100.000	ENSPPAG00000029148	ZMAT5	100	100.000	Pan_paniscus
ENSG00000100319	ZMAT5	100	94.118	ENSPPRG00000016453	ZMAT5	100	94.118	Panthera_pardus
ENSG00000100319	ZMAT5	100	94.118	ENSPTIG00000021188	ZMAT5	100	94.118	Panthera_tigris_altaica
ENSG00000100319	ZMAT5	100	100.000	ENSPTRG00000014229	ZMAT5	100	100.000	Pan_troglodytes
ENSG00000100319	ZMAT5	100	100.000	ENSPANG00000020624	ZMAT5	100	100.000	Papio_anubis
ENSG00000100319	ZMAT5	100	53.448	ENSPKIG00000023667	zmat5	100	53.448	Paramormyrops_kingsleyae
ENSG00000100319	ZMAT5	100	47.283	ENSPSIG00000005043	ZMAT5	100	48.370	Pelodiscus_sinensis
ENSG00000100319	ZMAT5	100	52.273	ENSPMGG00000016190	zmat5	100	52.841	Periophthalmus_magnuspinnatus
ENSG00000100319	ZMAT5	100	95.882	ENSPEMG00000007232	Zmat5	100	95.882	Peromyscus_maniculatus_bairdii
ENSG00000100319	ZMAT5	100	75.294	ENSPCIG00000026919	ZMAT5	100	75.294	Phascolarctos_cinereus
ENSG00000100319	ZMAT5	100	53.409	ENSPFOG00000019788	zmat5	100	52.459	Poecilia_formosa
ENSG00000100319	ZMAT5	99	53.143	ENSPLAG00000022833	zmat5	99	52.198	Poecilia_latipinna
ENSG00000100319	ZMAT5	99	53.143	ENSPMEG00000008885	zmat5	99	52.198	Poecilia_mexicana
ENSG00000100319	ZMAT5	100	53.977	ENSPREG00000012981	zmat5	100	52.841	Poecilia_reticulata
ENSG00000100319	ZMAT5	100	100.000	ENSPPYG00000011696	ZMAT5	100	100.000	Pongo_abelii
ENSG00000100319	ZMAT5	100	80.000	ENSPCAG00000009438	ZMAT5	100	80.000	Procavia_capensis
ENSG00000100319	ZMAT5	100	97.059	ENSPCOG00000020052	ZMAT5	100	97.059	Propithecus_coquereli
ENSG00000100319	ZMAT5	100	81.765	ENSPVAG00000017880	ZMAT5	100	81.765	Pteropus_vampyrus
ENSG00000100319	ZMAT5	100	53.073	ENSPNYG00000008778	zmat5	100	53.073	Pundamilia_nyererei
ENSG00000100319	ZMAT5	69	59.504	ENSPNAG00000008209	zmat5	100	48.876	Pygocentrus_nattereri
ENSG00000100319	ZMAT5	100	93.529	ENSRNOG00000007849	Zmat5	100	93.529	Rattus_norvegicus
ENSG00000100319	ZMAT5	100	100.000	ENSRBIG00000018881	ZMAT5	100	100.000	Rhinopithecus_bieti
ENSG00000100319	ZMAT5	100	100.000	ENSRROG00000023979	ZMAT5	100	100.000	Rhinopithecus_roxellana
ENSG00000100319	ZMAT5	100	99.412	ENSSBOG00000016696	ZMAT5	100	99.412	Saimiri_boliviensis_boliviensis
ENSG00000100319	ZMAT5	100	51.724	ENSSFOG00015017242	zmat5	100	51.724	Scleropages_formosus
ENSG00000100319	ZMAT5	100	52.514	ENSSMAG00000001901	zmat5	100	53.073	Scophthalmus_maximus
ENSG00000100319	ZMAT5	72	65.041	ENSSDUG00000018849	zmat5	99	55.689	Seriola_dumerili
ENSG00000100319	ZMAT5	72	65.041	ENSSLDG00000012409	zmat5	98	55.952	Seriola_lalandi_dorsalis
ENSG00000100319	ZMAT5	100	80.588	ENSSARG00000013381	ZMAT5	100	80.588	Sorex_araneus
ENSG00000100319	ZMAT5	100	68.824	ENSSPUG00000018968	ZMAT5	100	70.000	Sphenodon_punctatus
ENSG00000100319	ZMAT5	100	56.742	ENSSPAG00000006369	zmat5	100	56.742	Stegastes_partitus
ENSG00000100319	ZMAT5	100	93.529	ENSSSCG00000024279	ZMAT5	100	93.529	Sus_scrofa
ENSG00000100319	ZMAT5	100	71.176	ENSTGUG00000010490	ZMAT5	100	71.176	Taeniopygia_guttata
ENSG00000100319	ZMAT5	100	52.514	ENSTRUG00000012501	zmat5	100	52.514	Takifugu_rubripes
ENSG00000100319	ZMAT5	76	60.465	ENSTNIG00000009066	zmat5	100	55.882	Tetraodon_nigroviridis
ENSG00000100319	ZMAT5	100	75.882	ENSTBEG00000012568	ZMAT5	100	75.882	Tupaia_belangeri
ENSG00000100319	ZMAT5	100	92.353	ENSTTRG00000000554	ZMAT5	100	92.353	Tursiops_truncatus
ENSG00000100319	ZMAT5	100	94.706	ENSUAMG00000015558	ZMAT5	100	94.706	Ursus_americanus
ENSG00000100319	ZMAT5	100	94.706	ENSUMAG00000016813	ZMAT5	74	94.706	Ursus_maritimus
ENSG00000100319	ZMAT5	100	94.118	ENSVVUG00000003593	ZMAT5	100	94.118	Vulpes_vulpes
ENSG00000100319	ZMAT5	100	52.273	ENSXMAG00000001402	zmat5	100	52.273	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	TAS	Process
GO:0005654	nucleoplasm	-	IDA	Component
GO:0005654	nucleoplasm	-	TAS	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	15146077.	IDA	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0008380	RNA splicing	15146077.	IC	Process