EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000100354 (Gene tree)
Gene ID
23112
Gene Symbol
TNRC6B
Alias
KIAA1093
Full Name
trinucleotide repeat containing adaptor 6B
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
290,992 bases
Position
chr22:40,044,817-40,335,808
Accession
29190
RBP type
canonical RBP
Summary
(Trinucleotide Repeat Containing Adaptor 6B) is a Protein Coding gene. Among its related pathways are CDK-mediated phosphorylation and removal of Cdc6 and Signaling by GPCR. Gene Ontology (GO) annotations related to this gene include nucleotide binding. An important paralog of this gene is TNRC6A.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000306759Ago_hookPF10427.92.2e-2011
ENSP00000384795Ago_hookPF10427.92.2e-2011
ENSP00000409429Ago_hookPF10427.92.2e-1911
ENSP00000401946Ago_hookPF10427.93e-1911
ENSP00000338371Ago_hookPF10427.91.3e-0711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
24142921Identification and characterization of FGF2-dependent mRNA: microRNA networks during lens fiber cell differentiation.G3 (Bethesda)2013 Dec 9Wolf Ldoi: 10.1534/g3.113.008698.
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000335727TNRC6B-20217933-ENSP000003383711723 (aa)-Q9UPQ9
ENST00000446273TNRC6B-2054741-ENSP000004094291391 (aa)-H0Y720
ENST00000301923TNRC6B-20115958-ENSP000003067591029 (aa)-Q9UPQ9
ENST00000454349TNRC6B-20618279-ENSP000004019461833 (aa)-Q9UPQ9
ENST00000441751TNRC6B-204415-ENSP0000039749137 (aa)-B0QYM5
ENST00000497559TNRC6B-209582--- (aa)--
ENST00000402203TNRC6B-2033444-ENSP000003847951029 (aa)-Q9UPQ9
ENST00000489500TNRC6B-208564--- (aa)--
ENST00000467658TNRC6B-207496--- (aa)--
Gene Model
Click here to download ENSG00000100354's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000100354Erythrocyte Indices5.74851070816862E-617903294
ENSG00000100354Echocardiography1.26680784322573E-717903301
ENSG00000100354E-Selectin7.1692000E-00519729612
ENSG00000100354Insulin Resistance8.7540000E-005-
ENSG00000100354Insulin Resistance5.9690000E-005-
ENSG00000100354Insulin8.9420000E-005-
ENSG00000100354Insulin5.8120000E-005-
ENSG00000100354Creatinine9.2370000E-005-
ENSG00000100354Platelet Function Tests6.5500000E-006-
ENSG00000100354Platelet Function Tests1.6700000E-006-
ENSG00000100354Child Development Disorders, Pervasive6.9000000E-005-
ENSG00000100354Body Mass Index4E-625673413
ENSG00000100354Circadian Rhythm5E-627494321
ENSG00000100354Body Height2E-719570815
ENSG00000100354Prostatic Neoplasms4E-622219177
ENSG00000100354Body Mass Index2E-625673413
ENSG00000100354Prostatic Neoplasms3E-622219177
ENSG00000100354Leiomyoma3E-1221460842
ENSG00000100354Circadian Rhythm1E-826955885
ENSG00000100354Circadian Rhythm4E-827494321
ENSG00000100354Prostatic Neoplasms4E-622219177
ENSG00000100354Body Mass Index7E-625673413
ENSG00000100354Prostatic Neoplasms5E-719117981
ENSG00000100354Hand Strength5E-625637336
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000100354rs3863954382240151565GAAAAMean corpuscular hemoglobin27863252[0.015-0.029] unit decrease0.02205186EFO_0004527
ENSG00000100354rs113018052240196077CMean corpuscular volume27863252[0.016-0.03] unit decrease0.02283313EFO_0004526
ENSG00000100354rs48219402240263569TChronotype27494321[0.014-0.03] unit increase0.022EFO_0004354
ENSG00000100354rs48219402240263569TMorning vs. evening chronotype27494321[1.03-1.07]1.05EFO_0004354
ENSG00000100354rs48219402240263569CChronotype26955885[0.018-0.034] unit increase0.026EFO_0004354
ENSG00000100354rs96231172240056115CProstate cancer19117981[1.11-1.26]1.18EFO_0001663
ENSG00000100354rs1399092240301577THeight19570815[0.03-0.47] cm increase0.25EFO_0004339
ENSG00000100354rs48204082240208941GBody mass index28892062[0.016-0.024] kg/m2 decrease0.02EFO_0004340
ENSG00000100354rs1399132240317857ABody mass index28892062[0.021-0.033] kg/m2 decrease0.027EFO_0004340
ENSG00000100354rs4701132240333610ASystolic blood pressure27618447[0.15-0.38] mmHg decrease0.2661EFO_0006335
ENSG00000100354rs4701132240333610APulse pressure27618447[0.16-0.32] mmHg decrease0.2427EFO_0005763
ENSG00000100354rs57579062240291753TNeutrophil percentage of white cells27863252[0.016-0.032] unit increase0.02401271EFO_0007990
ENSG00000100354rs48219402240263569CChronotype28604731[0.017-0.035] unit increase0.026EFO_0004354
ENSG00000100354rs124847762240256869GUterine fibroids21460842[1.11-1.37]1.23EFO_0000731
ENSG00000100354rs60018322240196210GHand grip strength25637336[0.66-1.51] unit decrease1.089EFO_0006941
ENSG00000100354rs48204082240208941TBody mass index26426971unit increase0.015630927EFO_0004340
ENSG00000100354rs48204082240208941TBody mass index30108127[NR] unit increase0.016EFO_0004340
ENSG00000100354rs1399132240317857TBody mass index30108127[NR] unit increase0.014EFO_0004340
ENSG00000100354rs60018722240307241GDiverticular disease30177863[NR] unit increase0.002715EFO_1001460
ENSG00000100354rs44028602240158441TUterine fibroids30194396[1.08-1.14]1.11EFO_0000731
ENSG00000100354rs124849512240307071GUterine fibroids30194396[1.08-1.14]1.11EFO_0000731
ENSG00000100354rs48204102240294381?Body mass index30595370EFO_0004340
ENSG00000100354rs1399202240330745CRegular attendance at a pub or social club29970889[0.004-0.0076] unit decrease0.00580574EFO_0009592
ENSG00000100354rs1399192240330179?Systolic blood pressure30595370EFO_0006335
ENSG00000100354rs1399112240308048?Morning person30595370EFO_0008328
ENSG00000100354rs39501732240154103?Mean corpuscular hemoglobin30595370EFO_0004527
ENSG00000100354rs96112792240154101?Red blood cell count30595370EFO_0004305
ENSG00000100354rs124850032240239272APulse pressure30578418[0.31-0.5] mmHg increase0.4076EFO_0005763
ENSG00000100354rs1390559422240318352GDiastolic blood pressure30578418[0.22-0.45] mmHg increase0.3345EFO_0006336
ENSG00000100354rs124850032240239272GPulse pressure27841878unit decrease0.327EFO_0005763
ENSG00000100354rs124850032240239272GPulse pressure27841878unit decrease0.293EFO_0005763
ENSG00000100354rs581336352240075184TProstate cancer29892016[1.05-1.09]1.07EFO_0001663
ENSG00000100354rs124838532240143521CBreast cancer29059683[0.061-0.096] unit increase0.0783EFO_0000305
ENSG00000100354rs1399112240308048CChronotype306968231.0341709EFO_0008328
ENSG00000100354rs1399112240308048CMorning person306968231.0333781EFO_0008328
ENSG00000100354rs60018172240165755GMorning person306968231.0313531EFO_0008328
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000100354's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000100354TNRC6B9445.399ENSG00000090905TNRC6A10050.617
ENSG00000100354TNRC6B8953.012ENSG00000078687TNRC6C9741.026
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000100354TNRC6B9997.380ENSAMEG00000011025TNRC6B9997.380Ailuropoda_melanoleuca
ENSG00000100354TNRC6B9888.529ENSAPLG00000009347TNRC6B10088.765Anas_platyrhynchos
ENSG00000100354TNRC6B9585.697ENSACAG00000007281TNRC6B9972.088Anolis_carolinensis
ENSG00000100354TNRC6B100100.000ENSANAG00000035042TNRC6B10099.514Aotus_nancymaae
ENSG00000100354TNRC6B8963.953ENSAMXG00000008707tnrc6b8244.377Astyanax_mexicanus
ENSG00000100354TNRC6B10096.063ENSBTAG00000021076TNRC6B9996.057Bos_taurus
ENSG00000100354TNRC6B100100.000ENSCJAG00000002732TNRC6B100100.000Callithrix_jacchus
ENSG00000100354TNRC6B100100.000ENSCAFG00000001255TNRC6B10097.219Canis_familiaris
ENSG00000100354TNRC6B9997.059ENSCAFG00020002189TNRC6B9995.204Canis_lupus_dingo
ENSG00000100354TNRC6B9898.193ENSCHIG00000003491TNRC6B9993.047Capra_hircus
ENSG00000100354TNRC6B100100.000ENSTSYG00000011836TNRC6B10098.154Carlito_syrichta
ENSG00000100354TNRC6B100100.000ENSCPOG00000005705TNRC6B9896.935Cavia_porcellus
ENSG00000100354TNRC6B100100.000ENSCCAG00000019912TNRC6B10098.091Cebus_capucinus
ENSG00000100354TNRC6B100100.000ENSCATG00000029291TNRC6B10098.800Cercocebus_atys
ENSG00000100354TNRC6B100100.000ENSCLAG00000016942TNRC6B9893.576Chinchilla_lanigera
ENSG00000100354TNRC6B9994.105ENSCSAG00000006021TNRC6B9990.675Chlorocebus_sabaeus
ENSG00000100354TNRC6B6198.901ENSCHOG00000010004-6298.901Choloepus_hoffmanni
ENSG00000100354TNRC6B9986.150ENSCPBG00000022932TNRC6B9987.587Chrysemys_picta_bellii
ENSG00000100354TNRC6B100100.000ENSCANG00000030776TNRC6B10099.188Colobus_angolensis_palliatus
ENSG00000100354TNRC6B9995.337ENSCGRG00001020166Tnrc6b9792.132Cricetulus_griseus_chok1gshd
ENSG00000100354TNRC6B10095.401ENSCGRG00000016696Tnrc6b9992.316Cricetulus_griseus_crigri
ENSG00000100354TNRC6B10097.518ENSDNOG00000012744TNRC6B9996.347Dasypus_novemcinctus
ENSG00000100354TNRC6B100100.000ENSDORG00000003386Tnrc6b9796.803Dipodomys_ordii
ENSG00000100354TNRC6B9988.331ENSETEG00000006570TNRC6B9988.681Echinops_telfairi
ENSG00000100354TNRC6B9997.409ENSEASG00005005306TNRC6B9996.266Equus_asinus_asinus
ENSG00000100354TNRC6B100100.000ENSECAG00000009759TNRC6B10099.500Equus_caballus
ENSG00000100354TNRC6B7597.436ENSEEUG00000008690-5997.436Erinaceus_europaeus
ENSG00000100354TNRC6B5263.907ENSELUG00000019468-7163.816Esox_lucius
ENSG00000100354TNRC6B100100.000ENSFCAG00000004791TNRC6B10097.120Felis_catus
ENSG00000100354TNRC6B9988.666ENSFALG00000012195TNRC6B10085.111Ficedula_albicollis
ENSG00000100354TNRC6B100100.000ENSFDAG00000021368TNRC6B9893.845Fukomys_damarensis
ENSG00000100354TNRC6B9988.809ENSGALG00000012050TNRC6B9786.102Gallus_gallus
ENSG00000100354TNRC6B9989.301ENSGAGG00000025188TNRC6B9889.247Gopherus_agassizii
ENSG00000100354TNRC6B100100.000ENSGGOG00000008444TNRC6B10099.836Gorilla_gorilla
ENSG00000100354TNRC6B10097.297ENSHGLG00000009306TNRC6B10097.175Heterocephalus_glaber_female
ENSG00000100354TNRC6B10097.297ENSHGLG00100018108TNRC6B9993.559Heterocephalus_glaber_male
ENSG00000100354TNRC6B8957.522ENSIPUG00000001515tnrc6b9350.000Ictalurus_punctatus
ENSG00000100354TNRC6B100100.000ENSSTOG00000008927TNRC6B9893.985Ictidomys_tridecemlineatus
ENSG00000100354TNRC6B10097.297ENSJJAG00000015779Tnrc6b9792.251Jaculus_jaculus
ENSG00000100354TNRC6B9678.808ENSLACG00000000628-9961.079Latimeria_chalumnae
ENSG00000100354TNRC6B9096.397ENSLAFG00000014473TNRC6B10096.653Loxodonta_africana
ENSG00000100354TNRC6B100100.000ENSMFAG00000003862TNRC6B10098.909Macaca_fascicularis
ENSG00000100354TNRC6B100100.000ENSMMUG00000021345TNRC6B10099.417Macaca_mulatta
ENSG00000100354TNRC6B9999.299ENSMNEG00000042745TNRC6B10099.299Macaca_nemestrina
ENSG00000100354TNRC6B100100.000ENSMLEG00000041780TNRC6B10099.417Mandrillus_leucophaeus
ENSG00000100354TNRC6B9989.548ENSMGAG00000012333TNRC6B9989.442Meleagris_gallopavo
ENSG00000100354TNRC6B10095.401ENSMAUG00000016123Tnrc6b9892.203Mesocricetus_auratus
ENSG00000100354TNRC6B100100.000ENSMICG00000014056TNRC6B10098.159Microcebus_murinus
ENSG00000100354TNRC6B95100.000ENSMOCG00000020334Tnrc6b9796.000Microtus_ochrogaster
ENSG00000100354TNRC6B6580.645ENSMMOG00000002799si:dkey-217f16.65969.388Mola_mola
ENSG00000100354TNRC6B10096.108MGP_CAROLIEiJ_G0020043Tnrc6b9892.329Mus_caroli
ENSG00000100354TNRC6B10096.226ENSMUSG00000047888Tnrc6b9995.851Mus_musculus
ENSG00000100354TNRC6B10095.165MGP_PahariEiJ_G0020045Tnrc6b9792.086Mus_pahari
ENSG00000100354TNRC6B10096.344MGP_SPRETEiJ_G0020941Tnrc6b9896.189Mus_spretus
ENSG00000100354TNRC6B9698.473ENSMPUG00000016442TNRC6B10093.298Mustela_putorius_furo
ENSG00000100354TNRC6B9996.889ENSMLUG00000008765TNRC6B9996.889Myotis_lucifugus
ENSG00000100354TNRC6B10097.297ENSNGAG00000021294Tnrc6b9792.381Nannospalax_galili
ENSG00000100354TNRC6B100100.000ENSNLEG00000015311TNRC6B10099.806Nomascus_leucogenys
ENSG00000100354TNRC6B9991.029ENSOPRG00000012054TNRC6B8894.693Ochotona_princeps
ENSG00000100354TNRC6B100100.000ENSODEG00000013146TNRC6B9893.906Octodon_degus
ENSG00000100354TNRC6B9168.889ENSONIG00000019679-9939.928Oreochromis_niloticus
ENSG00000100354TNRC6B10097.393ENSOCUG00000016128TNRC6B9893.521Oryctolagus_cuniculus
ENSG00000100354TNRC6B10097.714ENSOGAG00000011096TNRC6B10097.714Otolemur_garnettii
ENSG00000100354TNRC6B100100.000ENSOARG00000017238TNRC6B9792.684Ovis_aries
ENSG00000100354TNRC6B100100.000ENSPPAG00000028514TNRC6B10099.782Pan_paniscus
ENSG00000100354TNRC6B100100.000ENSPPRG00000017741TNRC6B10098.251Panthera_pardus
ENSG00000100354TNRC6B9992.611ENSPTIG00000022064TNRC6B9894.150Panthera_tigris_altaica
ENSG00000100354TNRC6B100100.000ENSPTRG00000047826TNRC6B10099.673Pan_troglodytes
ENSG00000100354TNRC6B9893.709ENSPANG00000009271TNRC6B9994.268Papio_anubis
ENSG00000100354TNRC6B9988.126ENSPSIG00000005318TNRC6B9985.691Pelodiscus_sinensis
ENSG00000100354TNRC6B10097.297ENSPEMG00000011403Tnrc6b9791.822Peromyscus_maniculatus_bairdii
ENSG00000100354TNRC6B9987.541ENSPCIG00000020347TNRC6B9987.817Phascolarctos_cinereus
ENSG00000100354TNRC6B9256.667ENSPFOG00000006033-9643.891Poecilia_formosa
ENSG00000100354TNRC6B8769.863ENSPLAG00000001418-9937.209Poecilia_latipinna
ENSG00000100354TNRC6B6978.788ENSPMEG00000006371-6159.516Poecilia_mexicana
ENSG00000100354TNRC6B10099.420ENSPPYG00000011849TNRC6B10099.420Pongo_abelii
ENSG00000100354TNRC6B9587.326ENSPCAG00000008739TNRC6B7591.717Procavia_capensis
ENSG00000100354TNRC6B100100.000ENSPCOG00000020790TNRC6B10098.547Propithecus_coquereli
ENSG00000100354TNRC6B100100.000ENSPVAG00000004975TNRC6B9295.785Pteropus_vampyrus
ENSG00000100354TNRC6B8260.714ENSPNAG00000011713tnrc6b7246.531Pygocentrus_nattereri
ENSG00000100354TNRC6B10094.866ENSRNOG00000024907Tnrc6b9791.845Rattus_norvegicus
ENSG00000100354TNRC6B10099.237ENSRBIG00000035576TNRC6B10099.310Rhinopithecus_bieti
ENSG00000100354TNRC6B100100.000ENSRROG00000031135TNRC6B10099.223Rhinopithecus_roxellana
ENSG00000100354TNRC6B9999.357ENSSBOG00000029743TNRC6B10099.357Saimiri_boliviensis_boliviensis
ENSG00000100354TNRC6B9987.760ENSSHAG00000009692TNRC6B9987.869Sarcophilus_harrisii
ENSG00000100354TNRC6B7486.057ENSSARG00000007971-7088.636Sorex_araneus
ENSG00000100354TNRC6B9288.717ENSSPUG00000010801TNRC6B10088.599Sphenodon_punctatus
ENSG00000100354TNRC6B100100.000ENSSSCG00000000078TNRC6B9998.662Sus_scrofa
ENSG00000100354TNRC6B9388.279ENSTGUG00000010138-9988.217Taeniopygia_guttata
ENSG00000100354TNRC6B10097.297ENSTTRG00000011465TNRC6B9598.492Tursiops_truncatus
ENSG00000100354TNRC6B9997.412ENSUAMG00000007174TNRC6B9897.272Ursus_americanus
ENSG00000100354TNRC6B9997.412ENSUMAG00000014336TNRC6B10093.791Ursus_maritimus
ENSG00000100354TNRC6B100100.000ENSVPAG00000001467TNRC6B7291.066Vicugna_pacos
ENSG00000100354TNRC6B100100.000ENSVVUG00000007064TNRC6B9897.277Vulpes_vulpes
ENSG00000100354TNRC6B7249.744ENSXCOG00000003042-8739.324Xiphophorus_couchianus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000932P-body21873635.IBAComponent
GO:0003723RNA binding22658674.HDAFunction
GO:0005515protein binding17932509.19383768.19716330.19838187.21063388.21981923.24043833.24726324.IPIFunction
GO:0005654nucleoplasm21873635.IBAComponent
GO:0005829cytosol-TASComponent
GO:0007223Wnt signaling pathway, calcium modulating pathway-TASProcess
GO:0010628positive regulation of gene expression-TASProcess
GO:0010629negative regulation of gene expression-TASProcess
GO:0031047gene silencing by RNA19716330.IMPProcess
GO:0035068micro-ribonucleoprotein complex21873635.IBAComponent
GO:0035194posttranscriptional gene silencing by RNA-TASProcess
GO:0035195gene silencing by miRNA21873635.IBAProcess
GO:0035278miRNA mediated inhibition of translation-IEAProcess
GO:0045652regulation of megakaryocyte differentiation-TASProcess
GO:0060213positive regulation of nuclear-transcribed mRNA poly(A) tail shortening21873635.IBAProcess
GO:0060213positive regulation of nuclear-transcribed mRNA poly(A) tail shortening19716330.IMPProcess
GO:1900153positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay19716330.IMPProcess

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