EuRBPDB

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  • Description
  • RBDs
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000100601 (Gene tree)
Gene ID
8846
Gene Symbol
ALKBH1
Alias
hABH|alkB|ABH|ALKBH
Full Name
alkB homolog 1, histone H2A dioxygenase
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
35,629 bases
Position
chr14:77,672,404-77,708,032
Accession
17911
RBP type
canonical RBP
Summary
This gene encodes a homolog to the E. coli alkB gene product. The E. coli alkB protein is part of the adaptive response mechanism of DNA alkylation damage repair. It is involved in damage reversal by oxidative demethylation of 1-methyladenine and 3-methylcytosine. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP000002164892OG-FeII_Oxy_2PF13532.66.4e-3611

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
22065580Crystal structure and RNA binding properties of the RNA recognition motif (RRM) and AlkB domains in human AlkB homolog 8 (ABH8), an enzyme catalyzing tRNA hypermodification.J Biol Chem2012 Jan 13Pastore Cdoi: 10.1074/jbc.M111.286187
16858410Human ABH3 structure and key residues for oxidative demethylation to reverse DNA/RNA damage.EMBO J2006 Jul 26Sundheim O-
30338756ALKB-8, a 2-Oxoglutarate-Dependent Dioxygenase and S-Adenosine Methionine-Dependent Methyltransferase Modulates Metabolic Events Linked to Lysosome-Related Organelles and Aging in C. elegans.Folia Biol (Praha)2018Kollarova J-
18539108A silencing safeguard: links between RNA silencing and mRNA processing in Arabidopsis.Dev Cell2008 JunChen Xdoi: 10.1016/j.devcel.2008.05.012.
22443471Changes in protein dynamics of the DNA repair dioxygenase AlkB upon binding of Fe(2+) and 2-oxoglutarate.Biochemistry2012 Apr 24Bleijlevens Bdoi: 10.1021/bi201699e
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000557057ALKBH1-2041750-ENSP00000451886116 (aa)-G3V4M4
ENST00000555100ALKBH1-203649-ENSP00000451386112 (aa)-H0YJF3
ENST00000554097ALKBH1-202497--- (aa)--
ENST00000216489ALKBH1-2012594-ENSP00000216489389 (aa)-Q13686
Gene Model
Click here to download ENSG00000100601's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000100601Blood Pressure2.1844638E-005-
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000100601's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000100601ALKBH19157.062ENSAPOG00000001293alkbh18957.062Acanthochromis_polyacanthus
ENSG00000100601ALKBH110088.432ENSAMEG00000003966ALKBH110088.432Ailuropoda_melanoleuca
ENSG00000100601ALKBH19753.158ENSACIG00000000165alkbh19853.158Amphilophus_citrinellus
ENSG00000100601ALKBH18453.231ENSAOCG00000009356-8953.231Amphiprion_ocellaris
ENSG00000100601ALKBH17357.292ENSAOCG00000004578-9357.292Amphiprion_ocellaris
ENSG00000100601ALKBH19654.545ENSAOCG00000006323alkbh19854.545Amphiprion_ocellaris
ENSG00000100601ALKBH110054.103ENSAPEG00000015899alkbh19854.103Amphiprion_percula
ENSG00000100601ALKBH19846.494ENSAPEG00000006841-9646.494Amphiprion_percula
ENSG00000100601ALKBH16859.023ENSAPEG00000008720-8959.023Amphiprion_percula
ENSG00000100601ALKBH19555.556ENSATEG00000013518alkbh19655.556Anabas_testudineus
ENSG00000100601ALKBH18570.517ENSAPLG00000015685ALKBH110070.517Anas_platyrhynchos
ENSG00000100601ALKBH19066.382ENSACAG00000017276ALKBH19963.990Anolis_carolinensis
ENSG00000100601ALKBH110092.031ENSANAG00000023679ALKBH110092.031Aotus_nancymaae
ENSG00000100601ALKBH110046.310ENSACLG00000017932alkbh19846.310Astatotilapia_calliptera
ENSG00000100601ALKBH19457.221ENSAMXG00000034307alkbh19257.221Astyanax_mexicanus
ENSG00000100601ALKBH19986.856ENSBTAG00000008133ALKBH19986.856Bos_taurus
ENSG00000100601ALKBH110091.517ENSCJAG00000016936ALKBH110091.517Callithrix_jacchus
ENSG00000100601ALKBH110087.404ENSCAFG00000017229ALKBH110087.404Canis_familiaris
ENSG00000100601ALKBH110087.147ENSCAFG00020000856ALKBH110087.147Canis_lupus_dingo
ENSG00000100601ALKBH19986.340ENSCHIG00000017896ALKBH19986.340Capra_hircus
ENSG00000100601ALKBH110082.519ENSTSYG00000010944ALKBH110082.519Carlito_syrichta
ENSG00000100601ALKBH18468.293ENSCAPG00000016188ALKBH110067.683Cavia_aperea
ENSG00000100601ALKBH110086.118ENSCPOG00000001498ALKBH110086.118Cavia_porcellus
ENSG00000100601ALKBH110091.517ENSCCAG00000037198ALKBH110091.517Cebus_capucinus
ENSG00000100601ALKBH110096.401ENSCATG00000003846ALKBH110096.401Cercocebus_atys
ENSG00000100601ALKBH110085.861ENSCLAG00000014129ALKBH110085.861Chinchilla_lanigera
ENSG00000100601ALKBH18584.848ENSCHOG00000001531ALKBH17588.742Choloepus_hoffmanni
ENSG00000100601ALKBH19669.786ENSCPBG00000026326ALKBH110069.231Chrysemys_picta_bellii
ENSG00000100601ALKBH18335.185ENSCING00000022762-9935.185Ciona_intestinalis
ENSG00000100601ALKBH16940.000ENSCSAVG00000011640-9936.228Ciona_savignyi
ENSG00000100601ALKBH110096.144ENSCANG00000028132ALKBH110096.144Colobus_angolensis_palliatus
ENSG00000100601ALKBH110085.861ENSCGRG00001009815Alkbh110085.861Cricetulus_griseus_chok1gshd
ENSG00000100601ALKBH110084.062ENSCGRG00000009963Alkbh110084.062Cricetulus_griseus_crigri
ENSG00000100601ALKBH19852.094ENSCSEG00000015769alkbh19652.094Cynoglossus_semilaevis
ENSG00000100601ALKBH19953.708ENSCVAG00000012507alkbh19553.708Cyprinodon_variegatus
ENSG00000100601ALKBH18758.407ENSDARG00000071164alkbh19958.407Danio_rerio
ENSG00000100601ALKBH110087.661ENSDNOG00000007719ALKBH110087.661Dasypus_novemcinctus
ENSG00000100601ALKBH110086.375ENSDORG00000012377Alkbh110086.375Dipodomys_ordii
ENSG00000100601ALKBH18435.608FBgn0065035AlkB9835.608Drosophila_melanogaster
ENSG00000100601ALKBH110082.005ENSETEG00000010342ALKBH110082.005Echinops_telfairi
ENSG00000100601ALKBH19148.370ENSEBUG00000006261alkbh19848.370Eptatretus_burgeri
ENSG00000100601ALKBH110087.404ENSEASG00005020190ALKBH110087.404Equus_asinus_asinus
ENSG00000100601ALKBH110087.404ENSECAG00000022027ALKBH110087.404Equus_caballus
ENSG00000100601ALKBH18576.842ENSEEUG00000007227-10071.545Erinaceus_europaeus
ENSG00000100601ALKBH19957.576ENSELUG00000016747alkbh19457.576Esox_lucius
ENSG00000100601ALKBH110075.703ENSFCAG00000037897ALKBH110075.703Felis_catus
ENSG00000100601ALKBH19768.351ENSFALG00000012588ALKBH19868.351Ficedula_albicollis
ENSG00000100601ALKBH110088.175ENSFDAG00000019064ALKBH110088.175Fukomys_damarensis
ENSG00000100601ALKBH19955.928ENSFHEG00000015690alkbh19855.928Fundulus_heteroclitus
ENSG00000100601ALKBH17556.849ENSGMOG00000016932alkbh110056.849Gadus_morhua
ENSG00000100601ALKBH19469.041ENSGALG00000010485ALKBH18968.241Gallus_gallus
ENSG00000100601ALKBH19954.756ENSGAFG00000010990alkbh19854.756Gambusia_affinis
ENSG00000100601ALKBH17553.925ENSGACG00000013378alkbh19953.925Gasterosteus_aculeatus
ENSG00000100601ALKBH19768.700ENSGAGG00000009957ALKBH110068.205Gopherus_agassizii
ENSG00000100601ALKBH110099.229ENSGGOG00000011055ALKBH110099.229Gorilla_gorilla
ENSG00000100601ALKBH110086.889ENSHGLG00000015533ALKBH110086.889Heterocephalus_glaber_female
ENSG00000100601ALKBH110086.889ENSHGLG00100013968ALKBH110086.889Heterocephalus_glaber_male
ENSG00000100601ALKBH18955.143ENSHCOG00000006780alkbh19155.143Hippocampus_comes
ENSG00000100601ALKBH19160.169ENSIPUG00000010201alkbh19060.169Ictalurus_punctatus
ENSG00000100601ALKBH19977.835ENSSTOG00000024819-9877.835Ictidomys_tridecemlineatus
ENSG00000100601ALKBH110087.661ENSSTOG00000003254-10087.661Ictidomys_tridecemlineatus
ENSG00000100601ALKBH110086.632ENSJJAG00000019755Alkbh110086.632Jaculus_jaculus
ENSG00000100601ALKBH19454.670ENSKMAG00000002019alkbh19154.670Kryptolebias_marmoratus
ENSG00000100601ALKBH19456.831ENSLBEG00000007472alkbh19256.831Labrus_bergylta
ENSG00000100601ALKBH19660.533ENSLACG00000013496ALKBH19860.533Latimeria_chalumnae
ENSG00000100601ALKBH19161.408ENSLOCG00000008800alkbh19161.408Lepisosteus_oculatus
ENSG00000100601ALKBH110087.147ENSLAFG00000003475ALKBH110087.147Loxodonta_africana
ENSG00000100601ALKBH110096.144ENSMFAG00000001551ALKBH110096.144Macaca_fascicularis
ENSG00000100601ALKBH110096.401ENSMMUG00000023626ALKBH110096.401Macaca_mulatta
ENSG00000100601ALKBH110089.460ENSMNEG00000033314ALKBH110089.460Macaca_nemestrina
ENSG00000100601ALKBH110096.144ENSMLEG00000033965ALKBH110096.144Mandrillus_leucophaeus
ENSG00000100601ALKBH18857.637ENSMAMG00000016048alkbh19657.637Mastacembelus_armatus
ENSG00000100601ALKBH110055.612ENSMZEG00005004627alkbh19855.612Maylandia_zebra
ENSG00000100601ALKBH18570.821ENSMGAG00000012910ALKBH110070.821Meleagris_gallopavo
ENSG00000100601ALKBH110068.123ENSMAUG00000012502Alkbh110068.123Mesocricetus_auratus
ENSG00000100601ALKBH110089.460ENSMICG00000030789ALKBH110089.460Microcebus_murinus
ENSG00000100601ALKBH110083.805ENSMOCG00000005374Alkbh110083.805Microtus_ochrogaster
ENSG00000100601ALKBH19553.659ENSMMOG00000018265alkbh19652.793Mola_mola
ENSG00000100601ALKBH19975.648ENSMODG00000005263ALKBH110075.648Monodelphis_domestica
ENSG00000100601ALKBH19855.208ENSMALG00000012608alkbh19855.208Monopterus_albus
ENSG00000100601ALKBH110082.776ENSMUSG00000079036Alkbh110082.776Mus_musculus
ENSG00000100601ALKBH110083.290MGP_PahariEiJ_G0029753Alkbh110083.290Mus_pahari
ENSG00000100601ALKBH110082.262MGP_SPRETEiJ_G0018839Alkbh110082.262Mus_spretus
ENSG00000100601ALKBH110086.632ENSMPUG00000008742ALKBH110086.632Mustela_putorius_furo
ENSG00000100601ALKBH110087.404ENSMLUG00000005220ALKBH110087.404Myotis_lucifugus
ENSG00000100601ALKBH110085.128ENSNGAG00000006997Alkbh110085.897Nannospalax_galili
ENSG00000100601ALKBH110048.855ENSNBRG00000012113alkbh19848.855Neolamprologus_brichardi
ENSG00000100601ALKBH110082.519ENSNLEG00000016766ALKBH110082.519Nomascus_leucogenys
ENSG00000100601ALKBH19867.801ENSMEUG00000015005ALKBH19967.801Notamacropus_eugenii
ENSG00000100601ALKBH110084.576ENSOPRG00000007549ALKBH110084.576Ochotona_princeps
ENSG00000100601ALKBH19557.825ENSONIG00000011694alkbh19756.667Oreochromis_niloticus
ENSG00000100601ALKBH19972.656ENSOANG00000010841ALKBH19972.656Ornithorhynchus_anatinus
ENSG00000100601ALKBH110086.118ENSOCUG00000001438ALKBH110086.118Oryctolagus_cuniculus
ENSG00000100601ALKBH110055.612ENSORLG00000010750alkbh19955.612Oryzias_latipes
ENSG00000100601ALKBH110055.612ENSORLG00020022193alkbh19955.612Oryzias_latipes_hni
ENSG00000100601ALKBH110055.102ENSORLG00015020192alkbh19955.102Oryzias_latipes_hsok
ENSG00000100601ALKBH19856.883ENSOMEG00000019337alkbh19156.883Oryzias_melastigma
ENSG00000100601ALKBH19887.895ENSOGAG00000006929ALKBH110087.895Otolemur_garnettii
ENSG00000100601ALKBH19985.825ENSOARG00000002621ALKBH19985.825Ovis_aries
ENSG00000100601ALKBH110099.743ENSPPAG00000041592ALKBH110099.743Pan_paniscus
ENSG00000100601ALKBH110088.689ENSPPRG00000014697ALKBH110088.689Panthera_pardus
ENSG00000100601ALKBH110088.689ENSPTIG00000014206ALKBH110088.689Panthera_tigris_altaica
ENSG00000100601ALKBH110099.743ENSPTRG00000006586ALKBH110099.743Pan_troglodytes
ENSG00000100601ALKBH110095.887ENSPANG00000006979ALKBH110095.887Papio_anubis
ENSG00000100601ALKBH19956.331ENSPKIG00000014959alkbh19856.331Paramormyrops_kingsleyae
ENSG00000100601ALKBH18170.846ENSPSIG00000011527ALKBH110070.393Pelodiscus_sinensis
ENSG00000100601ALKBH18754.493ENSPMGG00000010538alkbh19554.493Periophthalmus_magnuspinnatus
ENSG00000100601ALKBH110080.457ENSPEMG00000022798Alkbh110080.457Peromyscus_maniculatus_bairdii
ENSG00000100601ALKBH19975.389ENSPCIG00000026843ALKBH110075.389Phascolarctos_cinereus
ENSG00000100601ALKBH19954.615ENSPFOG00000006775alkbh19854.615Poecilia_formosa
ENSG00000100601ALKBH19954.615ENSPLAG00000011128alkbh19854.615Poecilia_latipinna
ENSG00000100601ALKBH19954.592ENSPMEG00000019521alkbh19854.592Poecilia_mexicana
ENSG00000100601ALKBH19954.847ENSPREG00000011690alkbh19854.847Poecilia_reticulata
ENSG00000100601ALKBH110098.201ENSPPYG00000006029ALKBH110098.201Pongo_abelii
ENSG00000100601ALKBH110088.432ENSPCAG00000004251ALKBH110088.432Procavia_capensis
ENSG00000100601ALKBH110089.460ENSPCOG00000027372ALKBH110089.460Propithecus_coquereli
ENSG00000100601ALKBH110087.661ENSPVAG00000006418ALKBH110087.661Pteropus_vampyrus
ENSG00000100601ALKBH19155.462ENSPNYG00000003199alkbh19955.462Pundamilia_nyererei
ENSG00000100601ALKBH19159.887ENSPNAG00000008625alkbh19059.887Pygocentrus_nattereri
ENSG00000100601ALKBH19982.902ENSRNOG00000012264Alkbh19982.902Rattus_norvegicus
ENSG00000100601ALKBH110095.887ENSRBIG00000026838ALKBH110095.887Rhinopithecus_bieti
ENSG00000100601ALKBH110095.887ENSRROG00000041777ALKBH110095.887Rhinopithecus_roxellana
ENSG00000100601ALKBH110092.031ENSSBOG00000014817ALKBH110092.031Saimiri_boliviensis_boliviensis
ENSG00000100601ALKBH19976.166ENSSHAG00000017615ALKBH19976.166Sarcophilus_harrisii
ENSG00000100601ALKBH19953.885ENSSFOG00015022204alkbh19953.885Scleropages_formosus
ENSG00000100601ALKBH19954.948ENSSMAG00000012912alkbh19754.948Scophthalmus_maximus
ENSG00000100601ALKBH19156.620ENSSDUG00000021889alkbh19256.620Seriola_dumerili
ENSG00000100601ALKBH19655.585ENSSLDG00000023125alkbh19755.585Seriola_lalandi_dorsalis
ENSG00000100601ALKBH110073.265ENSSARG00000006523ALKBH110073.265Sorex_araneus
ENSG00000100601ALKBH19855.643ENSSPUG00000009359ALKBH19955.643Sphenodon_punctatus
ENSG00000100601ALKBH19653.989ENSSPAG00000013486alkbh19753.989Stegastes_partitus
ENSG00000100601ALKBH19986.598ENSSSCG00000025906ALKBH19986.598Sus_scrofa
ENSG00000100601ALKBH19768.966ENSTGUG00000012335ALKBH19968.966Taeniopygia_guttata
ENSG00000100601ALKBH19954.805ENSTRUG00000022051alkbh19854.805Takifugu_rubripes
ENSG00000100601ALKBH19955.469ENSTNIG00000003557alkbh19955.469Tetraodon_nigroviridis
ENSG00000100601ALKBH110088.432ENSTBEG00000013830ALKBH110088.432Tupaia_belangeri
ENSG00000100601ALKBH18585.859ENSTTRG00000009325ALKBH18381.560Tursiops_truncatus
ENSG00000100601ALKBH110087.404ENSUAMG00000022446ALKBH110087.404Ursus_americanus
ENSG00000100601ALKBH110087.661ENSUMAG00000007173ALKBH110087.661Ursus_maritimus
ENSG00000100601ALKBH19987.887ENSVPAG00000001780ALKBH19987.887Vicugna_pacos
ENSG00000100601ALKBH110087.661ENSVVUG00000004431ALKBH110087.661Vulpes_vulpes
ENSG00000100601ALKBH19657.447ENSXETG00000011086alkbh19157.447Xenopus_tropicalis
ENSG00000100601ALKBH18956.897ENSXCOG00000009419alkbh19756.897Xiphophorus_couchianus
ENSG00000100601ALKBH19954.453ENSXMAG00000015656alkbh19854.453Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000049tRNA binding27497299.IDAFunction
GO:0001701in utero embryonic development-IEAProcess
GO:0001764neuron migration-IEAProcess
GO:0001890placenta development-IEAProcess
GO:0002101tRNA wobble cytosine modification27497299.IDAProcess
GO:0005719nuclear euchromatin21873635.IBAComponent
GO:0005739mitochondrion21873635.IBAComponent
GO:0005739mitochondrion18603530.27497299.IDAComponent
GO:0006281DNA repair18603530.19959401.IDAProcess
GO:0006307DNA dealkylation involved in DNA repair18603530.IDAProcess
GO:0006446regulation of translational initiation27745969.IMPProcess
GO:0006448regulation of translational elongation27745969.IMPProcess
GO:0008198ferrous iron binding21873635.IBAFunction
GO:0008198ferrous iron binding18603530.IDAFunction
GO:0016706oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors27497299.IDAFunction
GO:0031175neuron projection development-IEAProcess
GO:0035511oxidative DNA demethylation-IEAProcess
GO:0035516oxidative DNA demethylase activity30017583.IDAFunction
GO:0042056chemoattractant activity-IEAFunction
GO:0042245RNA repair18603530.IDAProcess
GO:0043524negative regulation of neuron apoptotic process-IEAProcess
GO:0048589developmental growth-IEAProcess
GO:0050918positive chemotaxis-IEAProcess
GO:0051213dioxygenase activity21873635.IBAFunction
GO:0070129regulation of mitochondrial translation27497299.IMPProcess
GO:0070579methylcytosine dioxygenase activity18603530.IDAFunction
GO:0070989oxidative demethylation18603530.IDAProcess
GO:0080111DNA demethylation18603530.30017583.IDAProcess
GO:01030531-ethyladenine demethylase activity-IEAFunction
GO:0140078class I DNA-(apurinic or apyrimidinic site) endonuclease activity19959401.IDAFunction
GO:1990983tRNA demethylation27745969.IDAProcess
GO:1990984tRNA demethylase activity27745969.IDAFunction

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