EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000102241 (Gene tree)
Gene ID
27336
Gene Symbol
HTATSF1
Alias
TAT-SF1
Full Name
HIV-1 Tat specific factor 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
15,415 bases
Position
chrX:136,496,932-136,512,346
Accession
5276
RBP type
canonical RBP
Summary
The protein encoded by this gene functions as a cofactor for the stimulation of transcriptional elongation by HIV-1 Tat, which binds to the HIV-1 promoter through Tat-TAR interaction. This protein may also serve as a dual-function factor to couple transcription and splicing and to facilitate their reciprocal activation. Alternatively spliced transcript variants have been found for this gene.[provided by RefSeq, Sep 2009]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000218364RRM_1PF00076.223.3e-1612
ENSP00000218364RRM_1PF00076.223.3e-1622
ENSP00000442699RRM_1PF00076.223.3e-1612
ENSP00000442699RRM_1PF00076.223.3e-1622
ENSP00000412420RRM_1PF00076.221.1e-0611
ENSP00000411381RRM_1PF00076.221.3e-0611
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
29625069Coordinated Control of mRNA and rRNA Processing Controls Embryonic Stem Cell Pluripotency and Differentiation.Cell Stem Cell2018 Apr 5Corsini NSdoi: 10.1016/j.stem.2018.03.002.
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000448450HTATSF1-2031014-ENSP00000411381244 (aa)-Q5H918
ENST00000218364HTATSF1-2012775-ENSP00000218364755 (aa)-O43719
ENST00000425695HTATSF1-202885-ENSP00000412420223 (aa)-Q5H919
ENST00000535601HTATSF1-2043019XM_005262404ENSP00000442699755 (aa)XP_005262461O43719
Gene Model
Click here to download ENSG00000102241's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000102241's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000102241HTATSF110057.322ENSAPOG00000009823htatsf19260.941Acanthochromis_polyacanthus
ENSG00000102241HTATSF110091.031ENSAMEG00000002921HTATSF19981.299Ailuropoda_melanoleuca
ENSG00000102241HTATSF110056.855ENSACIG00000020459htatsf19559.502Amphilophus_citrinellus
ENSG00000102241HTATSF110056.017ENSAOCG00000020994htatsf19258.933Amphiprion_ocellaris
ENSG00000102241HTATSF110056.379ENSAPEG00000016432htatsf18960.432Amphiprion_percula
ENSG00000102241HTATSF19754.167ENSATEG00000008903htatsf18161.559Anabas_testudineus
ENSG00000102241HTATSF17971.196ENSAPLG00000012401HTATSF19268.783Anas_platyrhynchos
ENSG00000102241HTATSF17568.750ENSACAG00000009346HTATSF18270.988Anolis_carolinensis
ENSG00000102241HTATSF19489.802ENSANAG00000025458-9988.889Aotus_nancymaae
ENSG00000102241HTATSF19580.641ENSANAG00000027986-9680.112Aotus_nancymaae
ENSG00000102241HTATSF110054.286ENSACLG00000008096htatsf19558.087Astatotilapia_calliptera
ENSG00000102241HTATSF110057.509ENSAMXG00000008387htatsf17963.298Astyanax_mexicanus
ENSG00000102241HTATSF110085.656ENSBTAG00000032711HTATSF19976.431Bos_taurus
ENSG00000102241HTATSF110091.393ENSBTAG00000054942HTATSF19979.948Bos_taurus
ENSG00000102241HTATSF110091.393ENSBTAG00000055212HTATSF19979.948Bos_taurus
ENSG00000102241HTATSF18040.566WBGene00022025Y65B4A.17139.385Caenorhabditis_elegans
ENSG00000102241HTATSF110095.102ENSCJAG00000003676HTATSF19991.055Callithrix_jacchus
ENSG00000102241HTATSF110091.803ENSCAFG00000023294HTATSF19982.157Canis_familiaris
ENSG00000102241HTATSF110091.803ENSCAFG00020024635HTATSF19980.909Canis_lupus_dingo
ENSG00000102241HTATSF110091.803ENSCHIG00000000312HTATSF19981.092Capra_hircus
ENSG00000102241HTATSF110090.574ENSTSYG00000028876HTATSF19986.418Carlito_syrichta
ENSG00000102241HTATSF110093.852ENSCCAG00000025329-9987.166Cebus_capucinus
ENSG00000102241HTATSF110095.492ENSCCAG00000022701-9992.647Cebus_capucinus
ENSG00000102241HTATSF110098.361ENSCATG00000029963HTATSF19997.477Cercocebus_atys
ENSG00000102241HTATSF110087.295ENSCLAG00000002718HTATSF19976.556Chinchilla_lanigera
ENSG00000102241HTATSF110098.361ENSCSAG00000007505HTATSF19997.742Chlorocebus_sabaeus
ENSG00000102241HTATSF19969.600ENSCPBG00000026092HTATSF18967.554Chrysemys_picta_bellii
ENSG00000102241HTATSF17957.500ENSCING00000005914-7746.835Ciona_intestinalis
ENSG00000102241HTATSF18039.894ENSCSAVG00000000371-5753.962Ciona_savignyi
ENSG00000102241HTATSF110098.770ENSCANG00000028495HTATSF19997.477Colobus_angolensis_palliatus
ENSG00000102241HTATSF110087.347ENSCGRG00001021602Htatsf19974.776Cricetulus_griseus_chok1gshd
ENSG00000102241HTATSF17370.796ENSCGRG00000002085Htatsf19968.759Cricetulus_griseus_crigri
ENSG00000102241HTATSF110059.551ENSCVAG00000014070htatsf18163.492Cyprinodon_variegatus
ENSG00000102241HTATSF110054.043ENSDARG00000056649htatsf18059.673Danio_rerio
ENSG00000102241HTATSF110089.344ENSDNOG00000002254HTATSF19981.711Dasypus_novemcinctus
ENSG00000102241HTATSF17745.263FBgn0037081barc5747.368Drosophila_melanogaster
ENSG00000102241HTATSF19950.000ENSETEG00000006377-6850.000Echinops_telfairi
ENSG00000102241HTATSF19946.212ENSEBUG00000001534htatsf17550.392Eptatretus_burgeri
ENSG00000102241HTATSF110088.934ENSEASG00005003440HTATSF19980.729Equus_asinus_asinus
ENSG00000102241HTATSF110088.934ENSECAG00000009156HTATSF19980.859Equus_caballus
ENSG00000102241HTATSF110088.211ENSEEUG00000010668HTATSF19967.806Erinaceus_europaeus
ENSG00000102241HTATSF19856.746ENSELUG00000005486htatsf18458.782Esox_lucius
ENSG00000102241HTATSF110089.344ENSFCAG00000031924HTATSF19982.314Felis_catus
ENSG00000102241HTATSF110061.472ENSFALG00000003728HTATSF18766.917Ficedula_albicollis
ENSG00000102241HTATSF110086.066ENSFDAG00000008617HTATSF19975.462Fukomys_damarensis
ENSG00000102241HTATSF110058.300ENSFHEG00000020286htatsf18364.116Fundulus_heteroclitus
ENSG00000102241HTATSF19758.590ENSGMOG00000016444htatsf19963.510Gadus_morhua
ENSG00000102241HTATSF110063.830ENSGALG00000006410HTATSF19065.707Gallus_gallus
ENSG00000102241HTATSF110059.350ENSGAFG00000003041htatsf18164.021Gambusia_affinis
ENSG00000102241HTATSF110058.824ENSGACG00000020459htatsf19758.486Gasterosteus_aculeatus
ENSG00000102241HTATSF1100100.000ENSGGOG00000026072HTATSF110099.735Gorilla_gorilla
ENSG00000102241HTATSF110054.286ENSHBUG00000004392htatsf19558.087Haplochromis_burtoni
ENSG00000102241HTATSF110087.295ENSHGLG00000005328HTATSF19977.454Heterocephalus_glaber_female
ENSG00000102241HTATSF110056.067ENSHCOG00000009056htatsf19061.097Hippocampus_comes
ENSG00000102241HTATSF110059.914ENSIPUG00000017828htatsf17664.754Ictalurus_punctatus
ENSG00000102241HTATSF110092.213ENSSTOG00000012505HTATSF19880.395Ictidomys_tridecemlineatus
ENSG00000102241HTATSF110057.490ENSKMAG00000007622htatsf19659.368Kryptolebias_marmoratus
ENSG00000102241HTATSF110056.723ENSLBEG00000001154htatsf18062.432Labrus_bergylta
ENSG00000102241HTATSF110062.948ENSLACG00000015989HTATSF18065.746Latimeria_chalumnae
ENSG00000102241HTATSF16246.207ENSLOCG00000015118htatsf18940.995Lepisosteus_oculatus
ENSG00000102241HTATSF110092.623ENSLAFG00000014307HTATSF19972.112Loxodonta_africana
ENSG00000102241HTATSF110097.951ENSMFAG00000044705HTATSF19997.477Macaca_fascicularis
ENSG00000102241HTATSF110098.361ENSMMUG00000006450HTATSF19997.477Macaca_mulatta
ENSG00000102241HTATSF110098.361ENSMNEG00000024084HTATSF19986.454Macaca_nemestrina
ENSG00000102241HTATSF110097.951ENSMLEG00000035511HTATSF19997.211Mandrillus_leucophaeus
ENSG00000102241HTATSF110056.504ENSMAMG00000021225htatsf18362.698Mastacembelus_armatus
ENSG00000102241HTATSF110054.286ENSMZEG00005000485htatsf19558.087Maylandia_zebra
ENSG00000102241HTATSF17871.978ENSMGAG00000003558HTATSF18570.330Meleagris_gallopavo
ENSG00000102241HTATSF110088.525ENSMAUG00000007235Htatsf19973.850Mesocricetus_auratus
ENSG00000102241HTATSF110091.393ENSMICG00000009348HTATSF19985.353Microcebus_murinus
ENSG00000102241HTATSF110087.295ENSMOCG00000022370-9569.467Microtus_ochrogaster
ENSG00000102241HTATSF110088.525ENSMOCG00000023007-9971.742Microtus_ochrogaster
ENSG00000102241HTATSF110054.472ENSMMOG00000011013htatsf19060.723Mola_mola
ENSG00000102241HTATSF110066.400ENSMODG00000000199-10066.400Monodelphis_domestica
ENSG00000102241HTATSF110067.611ENSMODG00000014087-9465.340Monodelphis_domestica
ENSG00000102241HTATSF19755.508ENSMALG00000019977htatsf19458.124Monopterus_albus
ENSG00000102241HTATSF110086.122MGP_CAROLIEiJ_G0033094Htatsf19973.193Mus_caroli
ENSG00000102241HTATSF110086.939ENSMUSG00000067873Htatsf19974.016Mus_musculus
ENSG00000102241HTATSF110087.347MGP_SPRETEiJ_G0034249Htatsf19973.885Mus_spretus
ENSG00000102241HTATSF110092.623ENSMPUG00000001901HTATSF19979.454Mustela_putorius_furo
ENSG00000102241HTATSF110083.607ENSMLUG00000028418-9975.658Myotis_lucifugus
ENSG00000102241HTATSF110086.996ENSMLUG00000009234-9872.533Myotis_lucifugus
ENSG00000102241HTATSF110088.115ENSNGAG00000017831Htatsf19976.831Nannospalax_galili
ENSG00000102241HTATSF110055.600ENSNBRG00000003818htatsf19558.784Neolamprologus_brichardi
ENSG00000102241HTATSF110098.770ENSNLEG00000002746HTATSF19998.143Nomascus_leucogenys
ENSG00000102241HTATSF110068.571ENSMEUG00000004133-9569.949Notamacropus_eugenii
ENSG00000102241HTATSF110056.400ENSONIG00000008638htatsf19559.009Oreochromis_niloticus
ENSG00000102241HTATSF18174.500ENSOANG00000011674-8574.063Ornithorhynchus_anatinus
ENSG00000102241HTATSF110093.033ENSOCUG00000012570HTATSF19982.082Oryctolagus_cuniculus
ENSG00000102241HTATSF19756.356ENSORLG00000002356htatsf18363.731Oryzias_latipes
ENSG00000102241HTATSF19756.356ENSORLG00020017818htatsf18063.990Oryzias_latipes_hni
ENSG00000102241HTATSF19754.733ENSORLG00015002268htatsf18462.595Oryzias_latipes_hsok
ENSG00000102241HTATSF19758.333ENSOMEG00000007564htatsf19459.954Oryzias_melastigma
ENSG00000102241HTATSF110087.295ENSOGAG00000005565HTATSF110082.237Otolemur_garnettii
ENSG00000102241HTATSF110086.475ENSOARG00000000481-9975.750Ovis_aries
ENSG00000102241HTATSF110090.984ENSOARG00000011215-9979.557Ovis_aries
ENSG00000102241HTATSF1100100.000ENSPPAG00000024268HTATSF110099.868Pan_paniscus
ENSG00000102241HTATSF110090.164ENSPPRG00000014209HTATSF19982.846Panthera_pardus
ENSG00000102241HTATSF19382.128ENSPTIG00000016887HTATSF19582.209Panthera_tigris_altaica
ENSG00000102241HTATSF1100100.000ENSPTRG00000044591HTATSF110099.868Pan_troglodytes
ENSG00000102241HTATSF19984.728ENSPANG00000010946HTATSF19984.728Papio_anubis
ENSG00000102241HTATSF110062.667ENSPKIG00000024852htatsf17966.480Paramormyrops_kingsleyae
ENSG00000102241HTATSF15780.315ENSPSIG00000010192HTATSF18376.271Pelodiscus_sinensis
ENSG00000102241HTATSF19958.607ENSPMGG00000006172htatsf18263.660Periophthalmus_magnuspinnatus
ENSG00000102241HTATSF110088.525ENSPEMG00000022397Htatsf19974.346Peromyscus_maniculatus_bairdii
ENSG00000102241HTATSF110065.200ENSPCIG00000030173-9963.616Phascolarctos_cinereus
ENSG00000102241HTATSF110065.587ENSPCIG00000018896-9562.824Phascolarctos_cinereus
ENSG00000102241HTATSF110058.943ENSPFOG00000007871htatsf18064.286Poecilia_formosa
ENSG00000102241HTATSF110060.300ENSPLAG00000007532htatsf18263.757Poecilia_latipinna
ENSG00000102241HTATSF110059.350ENSPMEG00000000352htatsf18264.286Poecilia_mexicana
ENSG00000102241HTATSF110061.049ENSPREG00000007811htatsf18264.550Poecilia_reticulata
ENSG00000102241HTATSF110099.590ENSPPYG00000020765HTATSF18298.867Pongo_abelii
ENSG00000102241HTATSF110089.344ENSPCAG00000010576HTATSF19968.533Procavia_capensis
ENSG00000102241HTATSF110091.393ENSPCOG00000021823HTATSF19986.400Propithecus_coquereli
ENSG00000102241HTATSF19890.000ENSPVAG00000010281HTATSF19974.899Pteropus_vampyrus
ENSG00000102241HTATSF110054.286ENSPNYG00000016693htatsf19558.087Pundamilia_nyererei
ENSG00000102241HTATSF110059.641ENSPNAG00000006166htatsf17965.278Pygocentrus_nattereri
ENSG00000102241HTATSF110086.885ENSRNOG00000027761Htatsf19973.643Rattus_norvegicus
ENSG00000102241HTATSF19986.193ENSRBIG00000035486HTATSF19985.695Rhinopithecus_bieti
ENSG00000102241HTATSF110097.951ENSRROG00000021939HTATSF19997.078Rhinopithecus_roxellana
ENSG00000102241HTATSF110089.754ENSSBOG00000017914-9987.433Saimiri_boliviensis_boliviensis
ENSG00000102241HTATSF110096.311ENSSBOG00000027186-9991.043Saimiri_boliviensis_boliviensis
ENSG00000102241HTATSF19766.529ENSSHAG00000018908-9165.942Sarcophilus_harrisii
ENSG00000102241HTATSF19966.122ENSSHAG00000006440-9968.734Sarcophilus_harrisii
ENSG00000102241HTATSF19957.143ENSSFOG00015012002htatsf18163.421Scleropages_formosus
ENSG00000102241HTATSF19756.780ENSSMAG00000002970htatsf19458.770Scophthalmus_maximus
ENSG00000102241HTATSF110055.870ENSSDUG00000020002htatsf18762.005Seriola_dumerili
ENSG00000102241HTATSF110055.466ENSSLDG00000016880htatsf19658.465Seriola_lalandi_dorsalis
ENSG00000102241HTATSF19885.833ENSSARG00000005193HTATSF19763.179Sorex_araneus
ENSG00000102241HTATSF110063.948ENSSPUG00000014767HTATSF18468.394Sphenodon_punctatus
ENSG00000102241HTATSF110055.187ENSSPAG00000000732htatsf19259.485Stegastes_partitus
ENSG00000102241HTATSF110092.623ENSSSCG00000023062HTATSF19873.907Sus_scrofa
ENSG00000102241HTATSF19762.882ENSTGUG00000002099HTATSF18667.506Taeniopygia_guttata
ENSG00000102241HTATSF110055.602ENSTRUG00000013383htatsf18362.963Takifugu_rubripes
ENSG00000102241HTATSF110056.098ENSTNIG00000016140htatsf18362.169Tetraodon_nigroviridis
ENSG00000102241HTATSF19490.393ENSTTRG00000002269HTATSF19972.031Tursiops_truncatus
ENSG00000102241HTATSF110090.984ENSUAMG00000012048HTATSF19983.533Ursus_americanus
ENSG00000102241HTATSF110090.984ENSUMAG00000010393HTATSF19981.558Ursus_maritimus
ENSG00000102241HTATSF19277.331ENSVPAG00000004569HTATSF19976.812Vicugna_pacos
ENSG00000102241HTATSF110091.803ENSVVUG00000024802HTATSF19980.779Vulpes_vulpes
ENSG00000102241HTATSF19761.134ENSXETG00000019749htatsf16765.181Xenopus_tropicalis
ENSG00000102241HTATSF110061.039ENSXCOG00000006912htatsf18265.840Xiphophorus_couchianus
ENSG00000102241HTATSF110060.593ENSXMAG00000000490htatsf18265.761Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome-IEAProcess
GO:0003723RNA binding22658674.HDAFunction
GO:0005634nucleus10454543.TASComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005684U2-type spliceosomal complex21873635.IBAComponent
GO:0005686U2 snRNP21873635.IBAComponent
GO:0006357regulation of transcription by RNA polymerase II10454543.TASProcess
GO:0019079viral genome replication10454543.TASProcess
GO:0032784regulation of DNA-templated transcription, elongation10454543.TASProcess

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