EuRBPDB

Description

Ensembl ID: ENSG00000102531 (Gene tree)
Gene ID: 22862
Gene Symbol: FNDC3A
Alias: bA203I16.5|KIAA0970|FNDC3
Full Name: fibronectin type III domain containing 3A
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Plus strand
Length: 233,868 bases
Position: chr13:48,975,912-49,209,779
Accession: 20296
RBP type: non-canonical RBP
Summary: (Fibronectin Type III Domain Containing 3A) is a Protein Coding gene. Diseases associated with FNDC3A include Holoprosencephaly 3. An important paralog of this gene is FNDC3B.

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004
29431736	Capturing the interactome of newly transcribed RNA	RIC & Hela	2018 Feb 12	Bao X	DOI: 10.1038/nmeth.4595
22658674	Insights into RNA biology from an atlas of mammalian mRNA-binding proteins	RIC & Hela	2012 May 31	Castello A	DOI: 10.1016/j.cell.2012.04.031
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & Hela	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000541916	FNDC3A-206	6328	XM_017020440	ENSP00000441831	1198 (aa)	XP_016875929	Q9Y2H6
ENST00000484074	FNDC3A-203	6082	-	ENSP00000420275	684 (aa)	-	G5E9X3
ENST00000497644	FNDC3A-205	582	-	ENSP00000418703	139 (aa)	-	H7C507
ENST00000492622	FNDC3A-204	6286	-	ENSP00000417257	1198 (aa)	-	Q9Y2H6
ENST00000378383	FNDC3A-201	2037	-	ENSP00000484320	326 (aa)	-	A0A087X1M6
ENST00000398316	FNDC3A-202	5714	XM_011534997	ENSP00000381362	1142 (aa)	XP_011533299	Q9Y2H6

Gene Model

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000102531	Child Development Disorders, Pervasive	4.9000000E-005	-
ENSG00000102531	Child Development Disorders, Pervasive	2.5000000E-005	-

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000102531	rs180991625	13	49004804	?	Number of common colds	28928442	[0.16-0.4] unit decrease	0.2773	EFO_0008417
ENSG00000102531	rs4942800	13	49074810	?	White blood cell count	30595370			EFO_0004308

Protein-Protein Interaction (PPI)

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000139	Golgi membrane	-	IEA	Component
GO:0001669	acrosomal vesicle	-	IEA	Component
GO:0003723	RNA binding	22658674.	HDA	Function
GO:0005794	Golgi apparatus	18218838.	IDA	Component
GO:0005829	cytosol	-	IEA	Component
GO:0007286	spermatid development	-	IEA	Process
GO:0009566	fertilization	-	IEA	Process
GO:0012506	vesicle membrane	-	IEA	Component
GO:0016020	membrane	19946888.	HDA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0060009	Sertoli cell development	-	IEA	Process
GO:0098609	cell-cell adhesion	-	IEA	Process