EuRBPDB

Description

Ensembl ID: ENSG00000103932 (Gene tree)
Gene ID: 26015
Gene Symbol: RPAP1
Alias: DKFZP727M111|KIAA1403|MGC858|FLJ12732
Full Name: RNA polymerase II associated protein 1
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Minus strand
Length: 27,102 bases
Position: chr15:41,517,176-41,544,277
Accession: 24567
RBP type: non-canonical RBP
Summary: This protein forms part of the RNA polymerase II (RNAPII) enzyme complex and may recruit RNAPII to chromatin through its interaction with acetylated histones. [provided by RefSeq, Jul 2012]

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & HEK293	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & U2OS	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000304330	RPAP1-201	4665	XM_005254297	ENSP00000306123	1393 (aa)	XP_005254354	Q9BWH6
ENST00000566863	RPAP1-209	545	-	ENSP00000455527	128 (aa)	-	H3BPY8
ENST00000565167	RPAP1-208	1712	-	-	- (aa)	-	-
ENST00000564934	RPAP1-206	639	-	-	- (aa)	-	-
ENST00000561631	RPAP1-203	401	-	-	- (aa)	-	-
ENST00000563293	RPAP1-205	499	-	-	- (aa)	-	-
ENST00000561603	RPAP1-202	3906	-	ENSP00000456207	1128 (aa)	-	H3BRE8
ENST00000565035	RPAP1-207	601	-	ENSP00000457203	200 (aa)	-	H3BTJ6
ENST00000569829	RPAP1-212	597	-	-	- (aa)	-	-
ENST00000562303	RPAP1-204	5897	-	ENSP00000455363	1315 (aa)	-	Q9BWH6
ENST00000567866	RPAP1-210	955	-	ENSP00000455381	180 (aa)	-	H3BPM3
ENST00000568413	RPAP1-211	586	-	-	- (aa)	-	-

Gene Model

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000103932	Platelet Function Tests	6.0900000E-006	-
ENSG00000103932	alpha-Linolenic Acid	1.8860000E-005	21829377
ENSG00000103932	Blood Pressure	3.9101486E-007	-

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000103932	rs721772	15	41537032	?	Lipid traits (pleiotropy) (HIPO component 1)	30289880			EFO_0004574\|EFO_0004530\|EFO_0004611\|EFO_0004612

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	-	IEA	Function
GO:0005515	protein binding	21044950.25416956.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0006366	transcription by RNA polymerase II	-	IEA	Process