EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSG00000104679 (Gene tree)
Gene ID: 203069
Gene Symbol: R3HCC1
Alias: DKFZp564N123
Full Name: R3H domain and coiled-coil containing 1
Gene Type: protein_coding
Species: Homo_sapiens
Status: confidence
Strand: Plus strand
Length: 26,160 bases
Position: chr8:23,270,120-23,296,279
Accession: 27329
RBP type: canonical RBP
Summary: (R3H Domain And Coiled-Coil Containing 1) is a Protein Coding gene. Diseases associated with R3HCC1 include Mixed Cell Type Cancer. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and nucleotide binding. An important paralog of this gene is R3HCC1L.

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSP00000429604	R3H	PF01424.22	4.6e-16	1	1
ENSP00000486278	R3H	PF01424.22	6.1e-16	1	1
ENSP00000428395	R3H	PF01424.22	6.5e-16	1	1
ENSP00000265806	R3H	PF01424.22	7.7e-16	1	1
ENSP00000397555	R3H	PF01424.22	9.3e-16	1	1
ENSP00000429417	R3H	PF01424.22	1.3e-10	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30528433	The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest	XRNAX & HEK293	2018 Dec 6	Trendel J	DOI: 10.1016/j.cell.2018.11.004

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000265806	R3HCC1-201	1773	-	ENSP00000265806	440 (aa)	-	A0A0R4J2E2
ENST00000522012	R3HCC1-208	1500	-	ENSP00000487121	201 (aa)	-	A0A0D9SG39
ENST00000519952	R3HCC1-205	985	-	ENSP00000429417	311 (aa)	-	E5RIK1
ENST00000520480	R3HCC1-206	569	-	ENSP00000430339	148 (aa)	-	H0YBU3
ENST00000521588	R3HCC1-207	953	-	ENSP00000428395	283 (aa)	-	E5RIQ4
ENST00000517633	R3HCC1-203	271	-	ENSP00000486624	43 (aa)	-	A0A0D9SFI4
ENST00000518840	R3HCC1-204	781	-	ENSP00000429604	223 (aa)	-	E5RHX3
ENST00000523720	R3HCC1-209	629	-	-	- (aa)	-	-
ENST00000411463	R3HCC1-202	1467	-	ENSP00000397555	480 (aa)	-	Q9Y3T6
ENST00000625275	R3HCC1-210	1489	-	ENSP00000486278	398 (aa)	-	A0A0D9SF44

Gene Model

Click here to download ENSG00000104679's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSG00000104679's network

* RBP PPI network refers to all genes directly bind to RBP

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSG00000104679	R3HCC1	80	40.000	ENSAPOG00000003616	r3hcc1	91	32.794	Acanthochromis_polyacanthus
ENSG00000104679	R3HCC1	100	100.000	ENSAMEG00000002963	R3HCC1	99	76.842	Ailuropoda_melanoleuca
ENSG00000104679	R3HCC1	100	44.186	ENSACIG00000017144	r3hcc1	98	38.788	Amphilophus_citrinellus
ENSG00000104679	R3HCC1	93	33.412	ENSAOCG00000003945	r3hcc1	97	34.204	Amphiprion_ocellaris
ENSG00000104679	R3HCC1	93	32.941	ENSAPEG00000003613	r3hcc1	97	33.647	Amphiprion_percula
ENSG00000104679	R3HCC1	81	38.017	ENSATEG00000023860	r3hcc1	99	32.542	Anabas_testudineus
ENSG00000104679	R3HCC1	100	79.070	ENSACAG00000016627	R3HCC1	97	49.543	Anolis_carolinensis
ENSG00000104679	R3HCC1	100	97.674	ENSANAG00000036169	R3HCC1	100	92.462	Aotus_nancymaae
ENSG00000104679	R3HCC1	100	93.023	ENSBTAG00000025830	R3HCC1	99	76.059	Bos_taurus
ENSG00000104679	R3HCC1	100	97.674	ENSCJAG00000020118	R3HCC1	100	90.452	Callithrix_jacchus
ENSG00000104679	R3HCC1	100	97.674	ENSCAFG00000009210	R3HCC1	96	77.602	Canis_familiaris
ENSG00000104679	R3HCC1	100	100.000	ENSCAFG00020012870	R3HCC1	93	70.833	Canis_lupus_dingo
ENSG00000104679	R3HCC1	100	93.023	ENSCHIG00000009107	R3HCC1	99	71.744	Capra_hircus
ENSG00000104679	R3HCC1	100	97.674	ENSTSYG00000000511	R3HCC1	78	86.966	Carlito_syrichta
ENSG00000104679	R3HCC1	81	73.481	ENSCAPG00000015813	R3HCC1	99	62.181	Cavia_aperea
ENSG00000104679	R3HCC1	100	95.349	ENSCPOG00000009696	R3HCC1	99	69.492	Cavia_porcellus
ENSG00000104679	R3HCC1	100	97.674	ENSCCAG00000037811	R3HCC1	100	91.206	Cebus_capucinus
ENSG00000104679	R3HCC1	100	100.000	ENSCATG00000032971	R3HCC1	100	95.980	Cercocebus_atys
ENSG00000104679	R3HCC1	100	95.349	ENSCLAG00000015556	R3HCC1	91	73.629	Chinchilla_lanigera
ENSG00000104679	R3HCC1	100	100.000	ENSCSAG00000016250	R3HCC1	99	94.990	Chlorocebus_sabaeus
ENSG00000104679	R3HCC1	100	86.047	ENSCHOG00000000396	R3HCC1	95	75.399	Choloepus_hoffmanni
ENSG00000104679	R3HCC1	100	74.419	ENSCPBG00000002491	-	64	64.062	Chrysemys_picta_bellii
ENSG00000104679	R3HCC1	100	100.000	ENSCANG00000029441	R3HCC1	100	95.729	Colobus_angolensis_palliatus
ENSG00000104679	R3HCC1	100	97.674	ENSCGRG00001014977	R3hcc1	99	64.256	Cricetulus_griseus_chok1gshd
ENSG00000104679	R3HCC1	100	97.674	ENSCGRG00000004454	R3hcc1	99	64.256	Cricetulus_griseus_crigri
ENSG00000104679	R3HCC1	95	33.255	ENSCSEG00000005748	r3hcc1	98	32.783	Cynoglossus_semilaevis
ENSG00000104679	R3HCC1	99	30.303	ENSCVAG00000002640	r3hcc1	98	32.258	Cyprinodon_variegatus
ENSG00000104679	R3HCC1	100	44.186	ENSDARG00000099593	r3hcc1	98	33.099	Danio_rerio
ENSG00000104679	R3HCC1	100	100.000	ENSDNOG00000007168	R3HCC1	99	76.471	Dasypus_novemcinctus
ENSG00000104679	R3HCC1	100	95.349	ENSDORG00000026365	R3hcc1	99	66.318	Dipodomys_ordii
ENSG00000104679	R3HCC1	100	95.349	ENSETEG00000001147	R3HCC1	98	67.416	Echinops_telfairi
ENSG00000104679	R3HCC1	100	95.349	ENSEASG00005018782	R3HCC1	80	82.609	Equus_asinus_asinus
ENSG00000104679	R3HCC1	100	95.349	ENSECAG00000025013	R3HCC1	98	81.633	Equus_caballus
ENSG00000104679	R3HCC1	100	90.698	ENSEEUG00000011918	R3HCC1	97	75.621	Erinaceus_europaeus
ENSG00000104679	R3HCC1	86	41.732	ENSELUG00000023650	r3hcc1	78	46.218	Esox_lucius
ENSG00000104679	R3HCC1	100	100.000	ENSFCAG00000012395	R3HCC1	96	81.093	Felis_catus
ENSG00000104679	R3HCC1	100	97.674	ENSFDAG00000001572	R3HCC1	99	70.236	Fukomys_damarensis
ENSG00000104679	R3HCC1	70	39.716	ENSGMOG00000017590	-	66	46.429	Gadus_morhua
ENSG00000104679	R3HCC1	100	44.186	ENSGAFG00000008747	-	91	34.103	Gambusia_affinis
ENSG00000104679	R3HCC1	97	32.207	ENSGACG00000008447	r3hcc1	97	33.693	Gasterosteus_aculeatus
ENSG00000104679	R3HCC1	100	100.000	ENSGGOG00000013817	R3HCC1	100	97.500	Gorilla_gorilla
ENSG00000104679	R3HCC1	100	44.186	ENSHBUG00000022250	-	63	49.398	Haplochromis_burtoni
ENSG00000104679	R3HCC1	100	97.674	ENSHGLG00000010517	R3HCC1	97	72.842	Heterocephalus_glaber_female
ENSG00000104679	R3HCC1	100	97.674	ENSHGLG00100006388	R3HCC1	97	72.842	Heterocephalus_glaber_male
ENSG00000104679	R3HCC1	100	50.000	ENSHCOG00000011745	r3hcc1	95	32.227	Hippocampus_comes
ENSG00000104679	R3HCC1	100	46.512	ENSIPUG00000024504	r3hcc1	87	35.909	Ictalurus_punctatus
ENSG00000104679	R3HCC1	100	95.349	ENSSTOG00000027130	R3HCC1	99	72.318	Ictidomys_tridecemlineatus
ENSG00000104679	R3HCC1	100	93.023	ENSJJAG00000013075	R3hcc1	100	70.538	Jaculus_jaculus
ENSG00000104679	R3HCC1	91	32.282	ENSKMAG00000000286	r3hcc1	98	32.282	Kryptolebias_marmoratus
ENSG00000104679	R3HCC1	100	58.140	ENSLACG00000011894	R3HCC1	97	40.498	Latimeria_chalumnae
ENSG00000104679	R3HCC1	100	48.837	ENSLOCG00000015442	r3hcc1	99	34.515	Lepisosteus_oculatus
ENSG00000104679	R3HCC1	100	97.674	ENSLAFG00000016137	R3HCC1	96	72.279	Loxodonta_africana
ENSG00000104679	R3HCC1	100	100.000	ENSMFAG00000032894	R3HCC1	100	95.729	Macaca_fascicularis
ENSG00000104679	R3HCC1	100	100.000	ENSMMUG00000016655	R3HCC1	100	95.729	Macaca_mulatta
ENSG00000104679	R3HCC1	100	100.000	ENSMNEG00000043283	R3HCC1	100	95.729	Macaca_nemestrina
ENSG00000104679	R3HCC1	100	100.000	ENSMLEG00000030147	R3HCC1	100	95.477	Mandrillus_leucophaeus
ENSG00000104679	R3HCC1	84	40.476	ENSMAMG00000018146	r3hcc1	98	31.690	Mastacembelus_armatus
ENSG00000104679	R3HCC1	100	62.791	ENSMGAG00000001356	R3HCC1	93	46.861	Meleagris_gallopavo
ENSG00000104679	R3HCC1	100	97.674	ENSMAUG00000016096	R3hcc1	99	65.474	Mesocricetus_auratus
ENSG00000104679	R3HCC1	100	97.674	ENSMICG00000011146	R3HCC1	100	84.925	Microcebus_murinus
ENSG00000104679	R3HCC1	100	97.674	ENSMOCG00000018508	R3hcc1	86	81.212	Microtus_ochrogaster
ENSG00000104679	R3HCC1	88	73.684	ENSMODG00000016809	-	100	51.549	Monodelphis_domestica
ENSG00000104679	R3HCC1	82	40.496	ENSMALG00000000731	r3hcc1	98	31.678	Monopterus_albus
ENSG00000104679	R3HCC1	100	97.674	MGP_CAROLIEiJ_G0019467	R3hcc1	99	63.692	Mus_caroli
ENSG00000104679	R3HCC1	100	97.674	ENSMUSG00000034194	R3hcc1	99	60.041	Mus_musculus
ENSG00000104679	R3HCC1	100	95.349	MGP_PahariEiJ_G0030484	R3hcc1	84	80.723	Mus_pahari
ENSG00000104679	R3HCC1	100	97.674	MGP_SPRETEiJ_G0020359	R3hcc1	99	59.838	Mus_spretus
ENSG00000104679	R3HCC1	100	100.000	ENSMPUG00000003457	R3HCC1	92	77.944	Mustela_putorius_furo
ENSG00000104679	R3HCC1	100	93.023	ENSMLUG00000000266	R3HCC1	97	76.824	Myotis_lucifugus
ENSG00000104679	R3HCC1	100	95.349	ENSNGAG00000016747	R3hcc1	100	74.565	Nannospalax_galili
ENSG00000104679	R3HCC1	100	44.186	ENSNBRG00000016975	-	74	32.323	Neolamprologus_brichardi
ENSG00000104679	R3HCC1	100	100.000	ENSNLEG00000015944	R3HCC1	100	88.981	Nomascus_leucogenys
ENSG00000104679	R3HCC1	100	81.395	ENSMEUG00000010587	R3HCC1	98	58.503	Notamacropus_eugenii
ENSG00000104679	R3HCC1	98	85.714	ENSOPRG00000013390	R3HCC1	96	71.812	Ochotona_princeps
ENSG00000104679	R3HCC1	100	93.023	ENSODEG00000007529	R3HCC1	99	70.149	Octodon_degus
ENSG00000104679	R3HCC1	100	79.070	ENSOANG00000013877	R3HCC1	97	60.000	Ornithorhynchus_anatinus
ENSG00000104679	R3HCC1	98	88.095	ENSOCUG00000023554	R3HCC1	87	71.396	Oryctolagus_cuniculus
ENSG00000104679	R3HCC1	90	34.828	ENSORLG00000016816	r3hcc1	97	34.474	Oryzias_latipes
ENSG00000104679	R3HCC1	92	34.115	ENSORLG00020012005	r3hcc1	97	33.858	Oryzias_latipes_hni
ENSG00000104679	R3HCC1	92	33.850	ENSORLG00015007018	r3hcc1	99	33.504	Oryzias_latipes_hsok
ENSG00000104679	R3HCC1	93	33.010	ENSOMEG00000000816	r3hcc1	99	32.908	Oryzias_melastigma
ENSG00000104679	R3HCC1	100	97.674	ENSOGAG00000001291	R3HCC1	99	77.215	Otolemur_garnettii
ENSG00000104679	R3HCC1	100	93.023	ENSOARG00000010146	R3HCC1	99	74.684	Ovis_aries
ENSG00000104679	R3HCC1	100	98.958	ENSPPAG00000033165	R3HCC1	100	98.958	Pan_paniscus
ENSG00000104679	R3HCC1	100	100.000	ENSPPRG00000002522	R3HCC1	100	80.227	Panthera_pardus
ENSG00000104679	R3HCC1	87	88.372	ENSPTIG00000011230	R3HCC1	95	78.500	Panthera_tigris_altaica
ENSG00000104679	R3HCC1	100	100.000	ENSPTRG00000020076	R3HCC1	100	98.958	Pan_troglodytes
ENSG00000104679	R3HCC1	100	100.000	ENSPANG00000000453	R3HCC1	100	95.729	Papio_anubis
ENSG00000104679	R3HCC1	91	36.870	ENSPKIG00000014426	-	73	46.875	Paramormyrops_kingsleyae
ENSG00000104679	R3HCC1	92	34.043	ENSPKIG00000020397	-	97	34.606	Paramormyrops_kingsleyae
ENSG00000104679	R3HCC1	100	76.744	ENSPSIG00000017664	R3HCC1	98	48.802	Pelodiscus_sinensis
ENSG00000104679	R3HCC1	100	55.814	ENSPMGG00000007792	r3hcc1	51	57.831	Periophthalmus_magnuspinnatus
ENSG00000104679	R3HCC1	100	97.674	ENSPEMG00000007118	R3hcc1	99	61.491	Peromyscus_maniculatus_bairdii
ENSG00000104679	R3HCC1	87	70.769	ENSPCIG00000022718	-	85	52.133	Phascolarctos_cinereus
ENSG00000104679	R3HCC1	100	41.860	ENSPFOG00000022301	r3hcc1	90	33.257	Poecilia_formosa
ENSG00000104679	R3HCC1	100	41.860	ENSPLAG00000010794	r3hcc1	90	33.562	Poecilia_latipinna
ENSG00000104679	R3HCC1	100	41.860	ENSPMEG00000022515	r3hcc1	90	33.257	Poecilia_mexicana
ENSG00000104679	R3HCC1	100	41.860	ENSPREG00000000713	r3hcc1	90	33.721	Poecilia_reticulata
ENSG00000104679	R3HCC1	92	97.044	ENSPPYG00000018436	R3HCC1	100	97.044	Pongo_abelii
ENSG00000104679	R3HCC1	100	97.674	ENSPCAG00000012229	R3HCC1	73	83.871	Procavia_capensis
ENSG00000104679	R3HCC1	100	97.674	ENSPCOG00000027554	R3HCC1	100	84.673	Propithecus_coquereli
ENSG00000104679	R3HCC1	100	90.698	ENSPVAG00000009829	R3HCC1	96	79.148	Pteropus_vampyrus
ENSG00000104679	R3HCC1	91	53.846	ENSPNAG00000023875	r3hcc1	66	54.545	Pygocentrus_nattereri
ENSG00000104679	R3HCC1	100	97.674	ENSRNOG00000016777	AABR07018321.1	85	62.475	Rattus_norvegicus
ENSG00000104679	R3HCC1	100	100.000	ENSRBIG00000028045	R3HCC1	100	96.231	Rhinopithecus_bieti
ENSG00000104679	R3HCC1	100	100.000	ENSRROG00000031126	R3HCC1	100	96.231	Rhinopithecus_roxellana
ENSG00000104679	R3HCC1	100	95.349	ENSSBOG00000022590	R3HCC1	100	90.455	Saimiri_boliviensis_boliviensis
ENSG00000104679	R3HCC1	100	79.070	ENSSHAG00000016526	-	98	53.636	Sarcophilus_harrisii
ENSG00000104679	R3HCC1	96	32.300	ENSSFOG00015013507	r3hcc1	98	34.278	Scleropages_formosus
ENSG00000104679	R3HCC1	91	31.678	ENSSMAG00000008647	r3hcc1	98	31.787	Scophthalmus_maximus
ENSG00000104679	R3HCC1	98	42.857	ENSSDUG00000022786	r3hcc1	97	32.118	Seriola_dumerili
ENSG00000104679	R3HCC1	98	42.857	ENSSLDG00000019031	r3hcc1	97	32.037	Seriola_lalandi_dorsalis
ENSG00000104679	R3HCC1	100	86.047	ENSSARG00000013514	-	70	80.282	Sorex_araneus
ENSG00000104679	R3HCC1	100	79.070	ENSSPUG00000012520	-	95	55.782	Sphenodon_punctatus
ENSG00000104679	R3HCC1	93	32.847	ENSSPAG00000013497	r3hcc1	97	32.847	Stegastes_partitus
ENSG00000104679	R3HCC1	100	100.000	ENSSSCG00000037347	-	91	72.584	Sus_scrofa
ENSG00000104679	R3HCC1	100	100.000	ENSSSCG00000039915	-	98	79.095	Sus_scrofa
ENSG00000104679	R3HCC1	95	32.326	ENSTRUG00000015880	r3hcc1	98	32.326	Takifugu_rubripes
ENSG00000104679	R3HCC1	93	97.500	ENSTTRG00000012247	R3HCC1	96	72.437	Tursiops_truncatus
ENSG00000104679	R3HCC1	100	97.674	ENSUAMG00000007344	R3HCC1	98	78.341	Ursus_americanus
ENSG00000104679	R3HCC1	100	100.000	ENSVVUG00000005056	R3HCC1	96	78.281	Vulpes_vulpes
ENSG00000104679	R3HCC1	93	33.333	ENSXCOG00000017626	r3hcc1	88	33.493	Xiphophorus_couchianus
ENSG00000104679	R3HCC1	100	41.860	ENSXMAG00000018375	r3hcc1	91	33.842	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0035145	exon-exon junction complex	21873635.	IBA	Component