EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000104852 (Gene tree)
Gene ID
6625
Gene Symbol
SNRNP70
Alias
U1-70K|Snp1|RNPU1Z|RPU1|SNRP70
Full Name
small nuclear ribonucleoprotein U1 subunit 70
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
23,474 bases
Position
chr19:49,085,140-49,108,613
Accession
11150
RBP type
canonical RBP
Summary
(Small Nuclear Ribonucleoprotein U1 Subunit 70) is a Protein Coding gene. Diseases associated with SNRNP70 include Mixed Connective Tissue Disease and Systemic Lupus Erythematosus. Among its related pathways are mRNA Splicing - Major Pathway and Gene Expression. Gene Ontology (GO) annotations related to this gene include nucleic acid binding and RNA binding. An important paralog of this gene is SNRNP35.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000221448RRM_1PF00076.222.1e-1711
ENSP00000472998RRM_1PF00076.222.2e-1711
ENSP00000470023RRM_1PF00076.222.4e-1311
ENSP00000221448U1snRNP70_NPF12220.83.8e-2711
ENSP00000472998U1snRNP70_NPF12220.83.9e-2711
ENSP00000468828U1snRNP70_NPF12220.80.0002711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
19196664Alternative pre-mRNA splicing switches modulate gene expression in late erythropoiesis.Blood2009 Apr 2Yamamoto MLdoi: 10.1182/blood-2008-05-160325
21536904Interaction between the RNA binding domains of Ser-Arg splicing factor 1 and U1-70K snRNP protein determines early spliceosome assembly.Proc Natl Acad Sci U S A2011 May 17Cho Sdoi: 10.1073/pnas.1017700108
8253214Evolutionary clustering and functional similarity of RNA-binding proteins.FEBS Lett1993 Dec 6Fukami-Kobayashi K-
2531275Direct, sequence-specific binding of the human U1-70K ribonucleoprotein antigen protein to loop I of U1 small nuclear RNA.Mol Cell Biol1989 OctSurowy CS-
2447561The human U1-70K snRNP protein: cDNA cloning, chromosomal localization, expression, alternative splicing and RNA-binding.Nucleic Acids Res1987 Dec 23Spritz RA-
2147422Human U1-70K ribonucleoprotein antigen gene: organization, nucleotide sequence, and mapping to locus 19q13.3.Genomics1990 OctSpritz RA-
1714384Cloning of a yeast U1 snRNP 70K protein homologue: functional conservation of an RNA-binding domain between humans and yeast.EMBO J1991 SepSmith V-
9451595Autoepitope-mapping of the U1-70K protein with human-Drosophila chimeric proteins.J Autoimmun1997 DecHenriksson EW-
9473574Cloning of a gene, YT521, for a novel RNA splicing-related protein induced by hypoxia/reoxygenation.Brain Res Mol Brain Res1998 JanImai Y-
8972845In vitro reconstitution of mammalian U1 snRNPs active in splicing: the U1-C protein enhances the formation of early (E) spliceosomal complexes.Nucleic Acids Res1996 Dec 1Will CL-
12657633The structure of the zinc finger domain from human splicing factor ZNF265 fold.J Biol Chem2003 Jun 20Plambeck CA-
11069087Characterization of recombinant human autoantibody fragments directed toward the autoantigenic U1-70K protein.Eur J Immunol2000 OctDegen WG-
15863726U1 small nuclear RNP from Trypanosoma brucei: a minimal U1 snRNA with unusual protein components.Nucleic Acids Res2005 Apr 29Palfi Z-
19325628Crystal structure of human spliceosomal U1 snRNP at 5.5 A resolution.Nature2009 Mar 26Pomeranz Krummel DAdoi: 10.1038/nature07851.
20722023Anti-U1 RNP antibodies in cerebrospinal fluid are associated with central neuropsychiatric manifestations in systemic lupus erythematosus and mixed connective tissue disease.Arthritis Rheum2010 DecSato Tdoi: 10.1002/art.27700.
24748659Genome-wide RNA-binding analysis of the trypanosome U1 snRNP proteins U1C and U1-70K reveals cis/trans-spliceosomal network.Nucleic Acids Res2014 JunPreuBer Cdoi: 10.1093/nar/gku286
26333287Mapping epitopes of U1-70K autoantibodies at single-amino acid resolution.Autoimmunity2015Haddon DJdoi: 10.3109/08916934.2015.1077233
29802200RNA-binding proteins with basic-acidic dipeptide (BAD) domains self-assemble and aggregate in Alzheimer's disease.J Biol Chem2018 Jul 13Bishof Idoi: 10.1074/jbc.RA118.001747
7516470The U1 small nuclear ribonucleoprotein (snRNP) 70K protein is transported independently of U1 snRNP particles via a nuclear localization signal in the RNA-binding domain.Mol Cell Biol1994 JulRomac JM-
8076607The association of the U1-specific 70K and C proteins with U1 snRNPs is mediated in part by common U snRNP proteins.EMBO J1994 Sep 1Nelissen RL-
20194618HMGA1a trapping of U1 snRNP at an authentic 5' splice site induces aberrant exon skipping in sporadic Alzheimer's disease.Mol Cell Biol2010 MayOhe Kdoi: 10.1128/MCB.00114-10
25052091The splicing factor U1-70K interacts with the SMN complex and is required for nuclear gem integrity.J Cell Sci2014 Sep 15Stejskalova Edoi: 10.1242/jcs.155838
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000598984SNRNP70-207547-ENSP0000047002394 (aa)-M0QYR1
ENST00000601411SNRNP70-210377-ENSP0000046882833 (aa)-M0QX04
ENST00000544278SNRNP70-2033221--- (aa)--
ENST00000595231SNRNP70-2041673-ENSP00000471006166 (aa)-P08621
ENST00000401730SNRNP70-2023144-ENSP00000385077166 (aa)-P08621
ENST00000221448SNRNP70-2011603-ENSP00000221448428 (aa)-P08621
ENST00000597936SNRNP70-205580--- (aa)--
ENST00000599687SNRNP70-208563--- (aa)--
ENST00000598441SNRNP70-2061574-ENSP00000472998437 (aa)-P08621
ENST00000601065SNRNP70-2091757-ENSP00000468952166 (aa)-P08621
Gene Model
Click here to download ENSG00000104852's gene model file
Pathways
Pathway IDPathway NameSource
hsa03040SpliceosomeKEGG
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000104852rs730467921949102448?Systolic blood pressure30595370EFO_0006335
ENSG00000104852rs730467921949102448GSystolic blood pressure30224653[0.27-0.44] mmHg increase0.3554EFO_0006335
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000104852's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000104852SNRNP705536.538ENSG00000242389RBMY1E8534.286
ENSG00000104852SNRNP706039.286ENSG00000188529SRSF108139.286
ENSG00000104852SNRNP705536.538ENSG00000234414RBMY1A18534.286
ENSG00000104852SNRNP705536.538ENSG00000244395RBMY1D8534.286
ENSG00000104852SNRNP705536.538ENSG00000242875RBMY1B8534.286
ENSG00000104852SNRNP705137.500ENSG00000132819RBM386332.468
ENSG00000104852SNRNP705532.692ENSG00000099622CIRBP9134.247
ENSG00000104852SNRNP705141.667ENSG00000265241RBM8A7033.784
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000104852SNRNP708688.028ENSAPOG00000009322snrnp708988.028Acanthochromis_polyacanthus
ENSG00000104852SNRNP70100100.000ENSAMEG00000014468SNRNP7010093.878Ailuropoda_melanoleuca
ENSG00000104852SNRNP709989.634ENSAOCG00000011672snrnp705083.482Amphiprion_ocellaris
ENSG00000104852SNRNP709993.902ENSACAG00000013276SNRNP705197.297Anolis_carolinensis
ENSG00000104852SNRNP70100100.000ENSANAG00000036787SNRNP70100100.000Aotus_nancymaae
ENSG00000104852SNRNP70100100.000ENSBTAG00000048800-100100.000Bos_taurus
ENSG00000104852SNRNP709952.688WBGene00004390rnp-75653.723Caenorhabditis_elegans
ENSG00000104852SNRNP70100100.000ENSCJAG00000000193SNRNP70100100.000Callithrix_jacchus
ENSG00000104852SNRNP70100100.000ENSCAFG00000003711SNRNP70100100.000Canis_familiaris
ENSG00000104852SNRNP70100100.000ENSCAFG00020025470SNRNP7010096.388Canis_lupus_dingo
ENSG00000104852SNRNP70100100.000ENSCHIG00000018534-100100.000Capra_hircus
ENSG00000104852SNRNP706388.571ENSTSYG00000032350-8588.571Carlito_syrichta
ENSG00000104852SNRNP70100100.000ENSCPOG00000019589SNRNP7010097.059Cavia_porcellus
ENSG00000104852SNRNP70100100.000ENSCCAG00000036551SNRNP7010099.486Cebus_capucinus
ENSG00000104852SNRNP70100100.000ENSCATG00000016149SNRNP70100100.000Cercocebus_atys
ENSG00000104852SNRNP70100100.000ENSCLAG00000007991SNRNP7010098.178Chinchilla_lanigera
ENSG00000104852SNRNP70100100.000ENSCSAG00000002759SNRNP70100100.000Chlorocebus_sabaeus
ENSG00000104852SNRNP7010096.970ENSCPBG00000014841SNRNP705199.099Chrysemys_picta_bellii
ENSG00000104852SNRNP709771.429ENSCSAVG00000010109-5070.681Ciona_savignyi
ENSG00000104852SNRNP70100100.000ENSCANG00000036607SNRNP7010099.772Colobus_angolensis_palliatus
ENSG00000104852SNRNP70100100.000ENSCGRG00001020676Snrnp7010095.973Cricetulus_griseus_chok1gshd
ENSG00000104852SNRNP70100100.000ENSCGRG00000018048Snrnp7010095.973Cricetulus_griseus_crigri
ENSG00000104852SNRNP709988.415ENSCSEG00000011978snrnp709991.480Cynoglossus_semilaevis
ENSG00000104852SNRNP709689.937ENSCVAG00000003912snrnp709989.937Cyprinodon_variegatus
ENSG00000104852SNRNP709986.585ENSDARG00000077126snrnp709988.820Danio_rerio
ENSG00000104852SNRNP70100100.000ENSDNOG00000035849-100100.000Dasypus_novemcinctus
ENSG00000104852SNRNP70100100.000ENSDORG00000010228Snrnp7010095.946Dipodomys_ordii
ENSG00000104852SNRNP7074100.000ENSETEG00000005009SNRNP7074100.000Echinops_telfairi
ENSG00000104852SNRNP70100100.000ENSEASG00005004917SNRNP7010097.955Equus_asinus_asinus
ENSG00000104852SNRNP70100100.000ENSECAG00000013936-100100.000Equus_caballus
ENSG00000104852SNRNP7010097.872ENSEEUG00000005666SNRNP7010082.232Erinaceus_europaeus
ENSG00000104852SNRNP70100100.000ENSFCAG00000042603SNRNP7010091.591Felis_catus
ENSG00000104852SNRNP70100100.000ENSFDAG00000013830SNRNP709699.682Fukomys_damarensis
ENSG00000104852SNRNP709987.805ENSGMOG00000011492snrnp709791.403Gadus_morhua
ENSG00000104852SNRNP709988.415ENSGACG00000000448snrnp707091.928Gasterosteus_aculeatus
ENSG00000104852SNRNP709695.556ENSGAGG00000012628SNRNP709980.000Gopherus_agassizii
ENSG00000104852SNRNP70100100.000ENSGGOG00000008245SNRNP70100100.000Gorilla_gorilla
ENSG00000104852SNRNP70100100.000ENSHGLG00100001651-100100.000Heterocephalus_glaber_male
ENSG00000104852SNRNP70100100.000ENSSTOG00000013988-100100.000Ictidomys_tridecemlineatus
ENSG00000104852SNRNP70100100.000ENSJJAG00000002614Snrnp7010095.291Jaculus_jaculus
ENSG00000104852SNRNP70100100.000ENSLAFG00000028536SNRNP70100100.000Loxodonta_africana
ENSG00000104852SNRNP70100100.000ENSMFAG00000039824SNRNP70100100.000Macaca_fascicularis
ENSG00000104852SNRNP70100100.000ENSMMUG00000004928SNRNP70100100.000Macaca_mulatta
ENSG00000104852SNRNP70100100.000ENSMNEG00000038057SNRNP7010098.974Macaca_nemestrina
ENSG00000104852SNRNP70100100.000ENSMLEG00000030967SNRNP70100100.000Mandrillus_leucophaeus
ENSG00000104852SNRNP70100100.000ENSMAUG00000020970Snrnp7010096.188Mesocricetus_auratus
ENSG00000104852SNRNP70100100.000ENSMICG00000038437SNRNP70100100.000Microcebus_murinus
ENSG00000104852SNRNP70100100.000ENSMOCG00000012825Snrnp7010095.323Microtus_ochrogaster
ENSG00000104852SNRNP707576.716ENSMODG00000023381SNRNP7010080.000Monodelphis_domestica
ENSG00000104852SNRNP70100100.000MGP_CAROLIEiJ_G0029714Snrnp70100100.000Mus_caroli
ENSG00000104852SNRNP70100100.000ENSMUSG00000063511Snrnp70100100.000Mus_musculus
ENSG00000104852SNRNP70100100.000MGP_PahariEiJ_G0012939Snrnp70100100.000Mus_pahari
ENSG00000104852SNRNP70100100.000MGP_SPRETEiJ_G0030812Snrnp70100100.000Mus_spretus
ENSG00000104852SNRNP70100100.000ENSMPUG00000003258SNRNP7010098.182Mustela_putorius_furo
ENSG00000104852SNRNP70100100.000ENSMLUG00000011766SNRNP7010098.182Myotis_lucifugus
ENSG00000104852SNRNP70100100.000ENSNGAG00000021191Snrnp709597.531Nannospalax_galili
ENSG00000104852SNRNP709989.024ENSNBRG00000003126snrnp709692.377Neolamprologus_brichardi
ENSG00000104852SNRNP70100100.000ENSNLEG00000004899SNRNP70100100.000Nomascus_leucogenys
ENSG00000104852SNRNP70100100.000ENSODEG00000017499SNRNP7010093.290Octodon_degus
ENSG00000104852SNRNP709988.415ENSONIG00000007822snrnp705291.928Oreochromis_niloticus
ENSG00000104852SNRNP7010097.872ENSOANG00000005213SNRNP709799.550Ornithorhynchus_anatinus
ENSG00000104852SNRNP70100100.000ENSOCUG00000015081SNRNP708592.268Oryctolagus_cuniculus
ENSG00000104852SNRNP7010097.895ENSOGAG00000029310SNRNP7010097.511Otolemur_garnettii
ENSG00000104852SNRNP70100100.000ENSOARG00000012608SNRNP7093100.000Ovis_aries
ENSG00000104852SNRNP70100100.000ENSPPAG00000035067SNRNP70100100.000Pan_paniscus
ENSG00000104852SNRNP70100100.000ENSPPRG00000005579SNRNP7010098.182Panthera_pardus
ENSG00000104852SNRNP70100100.000ENSPTRG00000011277SNRNP70100100.000Pan_troglodytes
ENSG00000104852SNRNP70100100.000ENSPANG00000004068SNRNP70100100.000Papio_anubis
ENSG00000104852SNRNP709680.503ENSPKIG00000019992snrnp708679.012Paramormyrops_kingsleyae
ENSG00000104852SNRNP7010096.970ENSPSIG00000015251SNRNP709085.217Pelodiscus_sinensis
ENSG00000104852SNRNP709690.566ENSPMGG00000010153snrnp707790.062Periophthalmus_magnuspinnatus
ENSG00000104852SNRNP70100100.000ENSPEMG00000019011Snrnp7010095.333Peromyscus_maniculatus_bairdii
ENSG00000104852SNRNP709979.878ENSPMAG00000008502snrnp709783.422Petromyzon_marinus
ENSG00000104852SNRNP70100100.000ENSPCIG00000007296SNRNP7010088.018Phascolarctos_cinereus
ENSG00000104852SNRNP70100100.000ENSPPYG00000010234SNRNP7010099.542Pongo_abelii
ENSG00000104852SNRNP709985.976ENSPCOG00000023103SNRNP7010090.787Propithecus_coquereli
ENSG00000104852SNRNP7010094.545ENSPVAG00000009578SNRNP7010092.955Pteropus_vampyrus
ENSG00000104852SNRNP70100100.000ENSRBIG00000042387SNRNP7010099.771Rhinopithecus_bieti
ENSG00000104852SNRNP70100100.000ENSRROG00000033636SNRNP70100100.000Rhinopithecus_roxellana
ENSG00000104852SNRNP70100100.000ENSSBOG00000020026SNRNP70100100.000Saimiri_boliviensis_boliviensis
ENSG00000104852SNRNP70100100.000ENSSHAG00000002194SNRNP7010088.710Sarcophilus_harrisii
ENSG00000104852SNRNP70100100.000ENSSPUG00000016621SNRNP705298.649Sphenodon_punctatus
ENSG00000104852SNRNP70100100.000ENSSSCG00000023792-100100.000Sus_scrofa
ENSG00000104852SNRNP705293.878ENSTGUG00000016869-10092.157Taeniopygia_guttata
ENSG00000104852SNRNP706690.000ENSTNIG00000014186-9990.000Tetraodon_nigroviridis
ENSG00000104852SNRNP70100100.000ENSTTRG00000017099SNRNP7010097.506Tursiops_truncatus
ENSG00000104852SNRNP70100100.000ENSUAMG00000016147SNRNP7010098.182Ursus_americanus
ENSG00000104852SNRNP70100100.000ENSUMAG00000001467SNRNP70100100.000Ursus_maritimus
ENSG00000104852SNRNP7010096.970ENSVPAG00000005959-10080.995Vicugna_pacos
ENSG00000104852SNRNP70100100.000ENSVVUG00000022976SNRNP70100100.000Vulpes_vulpes
ENSG00000104852SNRNP709993.293ENSXETG00000022919snrnp705795.595Xenopus_tropicalis
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome9731529.ICProcess
GO:0000398mRNA splicing, via spliceosome9531537.IDAProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003723RNA binding2467746.IMPFunction
GO:0003729mRNA binding21873635.IBAFunction
GO:0005515protein binding9447963.14561889.18559666.18951082.19928837.21988832.22365833.23602568.23793891.25719862.26124092.26828962.IPIFunction
GO:0005634nucleus18559850.21113136.IDAComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005681spliceosomal complex9531537.9731529.IDAComponent
GO:0005685U1 snRNP21873635.IBAComponent
GO:0005685U1 snRNP21113136.23793891.25555158.IDAComponent
GO:0016607nuclear speck-ISSComponent
GO:0030619U1 snRNA binding21113136.25555158.IDAFunction
GO:0043462regulation of ATPase activity25719862.TASProcess
GO:0043484regulation of RNA splicing2467746.IMPProcess
GO:0048026positive regulation of mRNA splicing, via spliceosome-IEAProcess
GO:0061084negative regulation of protein refolding25719862.TASProcess
GO:1904715negative regulation of chaperone-mediated autophagy25719862.TASProcess

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