EuRBPDB

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  • Description
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000105321 (Gene tree)
Gene ID
26093
Gene Symbol
CCDC9
Alias
DKFZP586M1019
Full Name
coiled-coil domain containing 9
Gene Type
protein_coding
Species
Homo_sapiens
Status
putative
Strand
Plus strand
Length
17,722 bases
Position
chr19:47,255,980-47,273,701
Accession
24560
RBP type
non-canonical RBP
Summary
(Coiled-Coil Domain Containing 9) is a Protein Coding gene. An important paralog of this gene is CCDC9B.
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000643617CCDC9-2072163-ENSP00000494410587 (aa)-A0A2R8Y4Z8
ENST00000599398CCDC9-204834-ENSP00000469717128 (aa)-M0QYB4
ENST00000600117CCDC9-205580--- (aa)--
ENST00000595659CCDC9-202356-ENSP0000047070656 (aa)-M0QZR0
ENST00000596938CCDC9-203457-ENSP0000047284348 (aa)-M0R2W0
ENST00000221922CCDC9-2012093XM_017026578ENSP00000221922531 (aa)XP_016882067Q9Y3X0
ENST00000601154CCDC9-206454--- (aa)--
Gene Model
Click here to download ENSG00000105321's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000105321rs562045111947272755?White blood cell count30595370EFO_0004308
ENSG00000105321rs8888381947270529?Eosinophil counts30595370EFO_0004842
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000105321's network
Orthologs identified by RBPome
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000105321CCDC910098.214ENSMUSG00000041375Ccdc99897.778Mus_musculus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005515protein binding21044950.IPIFunction

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