EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • PRI
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000105323 (Gene tree)
Gene ID
11100
Gene Symbol
HNRNPUL1
Alias
E1B-AP5|E1BAP5|FLJ12944|HNRPUL1
Full Name
heterogeneous nuclear ribonucleoprotein U like 1
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
45,218 bases
Position
chr19:41,262,476-41,307,693
Accession
17011
RBP type
canonical RBP
Summary
This gene encodes a nuclear RNA-binding protein of the heterogeneous nuclear ribonucleoprotein (hnRNP) family. This protein binds specifically to adenovirus early-1B-55kDa oncoprotein. It may play an important role in nucleocytoplasmic RNA transport, and its function is modulated by early-1B-55kDa in adenovirus-infected cells. [provided by RefSeq, Mar 2016]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000478946SAPPF02037.272.4e-1011
ENSP00000484226SAPPF02037.272.4e-1011
ENSP00000470687SAPPF02037.271.2e-0911
ENSP00000375863SAPPF02037.271.4e-0911
ENSP00000367460SAPPF02037.272.9e-0911
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNANascentRICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8
Protein-RNA interaction(RNA-Binding Site)
Click here to download all RNA binding sites
Click here to download all RNA binding sites

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
27577262Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells.Sci Signal2016 Aug 30Larsen SCdoi: 10.1126/scisignal.aaf7329.
9733834E1B 55-kilodalton-associated protein: a cellular protein with RNA-binding activity implicated in nucleocytoplasmic transport of adenovirus and cellular mRNAs.J Virol1998 OctGabler S-
21083500Identification and characterization of adenovirus early region 1B-associated protein 5 as a surface marker on undifferentiated human embryonic stem cells.Stem Cells Dev2011 AprChoi HSdoi: 10.1089/scd.2010.0265
26412854A BRCA1-interacting lncRNA regulates homologous recombination.EMBO Rep2015 NovSharma Vdoi: 10.15252/embr.201540437
26020839Arginine methylation of hnRNPUL1 regulates interaction with NBS1 and recruitment to sites of DNA damage.Sci Rep2015 May 28Gurunathan Gdoi: 10.1038/srep10475.
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000352456HNRNPUL1-2023426XM_005258463ENSP00000340857766 (aa)XP_005258520A0A0A0MRA5
ENST00000378215HNRNPUL1-2032864-ENSP00000367460752 (aa)-Q9BUJ2
ENST00000593587HNRNPUL1-2052725-ENSP00000472629756 (aa)-Q9BUJ2
ENST00000597725HNRNPUL1-211573-ENSP00000469858172 (aa)-M0QYI8
ENST00000600596HNRNPUL1-217581-ENSP0000046993490 (aa)-M0QYM5
ENST00000392006HNRNPUL1-2043555XM_005258459ENSP00000375863856 (aa)XP_005258516Q9BUJ2
ENST00000602130HNRNPUL1-2202932-ENSP00000470687804 (aa)-Q9BUJ2
ENST00000601309HNRNPUL1-218672-ENSP00000470793118 (aa)-M0QZV6
ENST00000599521HNRNPUL1-212336--- (aa)--
ENST00000617774HNRNPUL1-222451-ENSP00000478946122 (aa)-A0A087X1I2
ENST00000600493HNRNPUL1-216531--- (aa)--
ENST00000595806HNRNPUL1-2101659--- (aa)--
ENST00000595196HNRNPUL1-2083043-ENSP00000472315105 (aa)-M0R247
ENST00000599614HNRNPUL1-2132447-ENSP00000473178641 (aa)-M0R3F1
ENST00000594207HNRNPUL1-206816--- (aa)--
ENST00000601336HNRNPUL1-219754-ENSP00000471302158 (aa)-M0R0K8
ENST00000595018HNRNPUL1-2072794-ENSP00000473132756 (aa)-Q9BUJ2
ENST00000599719HNRNPUL1-2141473-ENSP00000470172371 (aa)-M0QYZ0
ENST00000595336HNRNPUL1-209393-ENSP0000047222181 (aa)-M0R203
ENST00000617305HNRNPUL1-2211018-ENSP00000484226122 (aa)-A0A087X1I2
ENST00000600332HNRNPUL1-215644-ENSP0000046981626 (aa)-M0QYG9
ENST00000263367HNRNPUL1-2012952XM_005258461ENSP00000263367767 (aa)XP_005258518B7Z4B8
Gene Model
Click here to download ENSG00000105323's gene model file
Pathways
Pathway IDPathway NameSource
hsa05164Influenza AKEGG
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000105323rs133454561941301013CHeel bone mineral density28869591[0.018-0.033] unit decrease0.0255354EFO_0009270
ENSG00000105323rs133454561941301013CHeel bone mineral density28869591[0.023-0.044] unit decrease0.0337348EFO_0009270
ENSG00000105323rs7465491241941278449?Heel bone mineral density30048462[0.018-0.028] unit decrease0.0229806EFO_0009270
ENSG00000105323rs133454561941301013?Heel bone mineral density30048462[0.015-0.024] unit decrease0.0194043EFO_0009270
ENSG00000105323rs129833391941264985?Mean corpuscular hemoglobin30595370EFO_0004527
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000105323's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000105323HNRNPUL19850.000ENSG00000214753HNRNPUL28643.981
ENSG00000105323HNRNPUL19860.227ENSG00000153187HNRNPU9959.000
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000105323HNRNPUL19885.227ENSAPOG00000013078HNRNPUL16778.058Acanthochromis_polyacanthus
ENSG00000105323HNRNPUL110098.547ENSAMEG00000011681HNRNPUL110098.133Ailuropoda_melanoleuca
ENSG00000105323HNRNPUL19886.364ENSACIG00000024072HNRNPUL16778.777Amphilophus_citrinellus
ENSG00000105323HNRNPUL19885.227ENSAOCG00000006694HNRNPUL15781.250Amphiprion_ocellaris
ENSG00000105323HNRNPUL19885.227ENSAPEG00000014298HNRNPUL15781.250Amphiprion_percula
ENSG00000105323HNRNPUL19881.818ENSATEG00000008814HNRNPUL17760.320Anabas_testudineus
ENSG00000105323HNRNPUL1100100.000ENSANAG00000027262HNRNPUL110099.069Aotus_nancymaae
ENSG00000105323HNRNPUL19887.500ENSAMXG00000004623-6678.417Astyanax_mexicanus
ENSG00000105323HNRNPUL19886.364ENSAMXG00000013644HNRNPUL17763.798Astyanax_mexicanus
ENSG00000105323HNRNPUL110098.256ENSBTAG00000003168HNRNPUL110097.669Bos_taurus
ENSG00000105323HNRNPUL1100100.000ENSCJAG00000020106HNRNPUL110097.575Callithrix_jacchus
ENSG00000105323HNRNPUL110098.942ENSCAFG00000005026HNRNPUL110098.481Canis_familiaris
ENSG00000105323HNRNPUL197100.000ENSCAFG00020014782HNRNPUL110094.412Canis_lupus_dingo
ENSG00000105323HNRNPUL110098.256ENSCHIG00000015165HNRNPUL110094.289Capra_hircus
ENSG00000105323HNRNPUL198100.000ENSCPOG00000008101-10095.333Cavia_porcellus
ENSG00000105323HNRNPUL1100100.000ENSCCAG00000038049HNRNPUL110097.806Cebus_capucinus
ENSG00000105323HNRNPUL1100100.000ENSCATG00000039807HNRNPUL110099.734Cercocebus_atys
ENSG00000105323HNRNPUL198100.000ENSCLAG00000000985HNRNPUL110096.966Chinchilla_lanigera
ENSG00000105323HNRNPUL1100100.000ENSCSAG00000003544HNRNPUL110099.650Chlorocebus_sabaeus
ENSG00000105323HNRNPUL1100100.000ENSCANG00000027995HNRNPUL110099.601Colobus_angolensis_palliatus
ENSG00000105323HNRNPUL198100.000ENSCGRG00001015368Hnrnpul18793.841Cricetulus_griseus_chok1gshd
ENSG00000105323HNRNPUL19878.409ENSCSEG00000005657HNRNPUL16175.180Cynoglossus_semilaevis
ENSG00000105323HNRNPUL19884.091ENSCVAG00000009524-7278.231Cyprinodon_variegatus
ENSG00000105323HNRNPUL198100.000ENSDORG00000003603Hnrnpul19292.193Dipodomys_ordii
ENSG00000105323HNRNPUL18755.814ENSEBUG00000012163HNRNPUL17078.218Eptatretus_burgeri
ENSG00000105323HNRNPUL110098.837ENSEASG00005006344HNRNPUL110098.133Equus_asinus_asinus
ENSG00000105323HNRNPUL110098.837ENSECAG00000024149HNRNPUL110098.019Equus_caballus
ENSG00000105323HNRNPUL19884.091ENSELUG00000021668-5175.983Esox_lucius
ENSG00000105323HNRNPUL19887.500ENSELUG00000019520HNRNPUL16175.000Esox_lucius
ENSG00000105323HNRNPUL110099.419ENSFCAG00000005433HNRNPUL110098.715Felis_catus
ENSG00000105323HNRNPUL110098.256ENSFDAG00000011784HNRNPUL19396.715Fukomys_damarensis
ENSG00000105323HNRNPUL19882.955ENSGAFG00000015786HNRNPUL17171.290Gambusia_affinis
ENSG00000105323HNRNPUL1100100.000ENSGGOG00000009804HNRNPUL110099.734Gorilla_gorilla
ENSG00000105323HNRNPUL19885.227ENSHBUG00000010129HNRNPUL17761.493Haplochromis_burtoni
ENSG00000105323HNRNPUL110098.256ENSHGLG00000007171HNRNPUL110096.733Heterocephalus_glaber_female
ENSG00000105323HNRNPUL110090.349ENSHGLG00100005101HNRNPUL18997.059Heterocephalus_glaber_male
ENSG00000105323HNRNPUL19885.227ENSHCOG00000017927HNRNPUL17859.259Hippocampus_comes
ENSG00000105323HNRNPUL19888.636ENSIPUG00000024012HNRNPUL16764.632Ictalurus_punctatus
ENSG00000105323HNRNPUL19954.146ENSIPUG00000011639-7559.738Ictalurus_punctatus
ENSG00000105323HNRNPUL110098.256ENSSTOG00000001605HNRNPUL110097.550Ictidomys_tridecemlineatus
ENSG00000105323HNRNPUL198100.000ENSJJAG00000011986Hnrnpul110085.830Jaculus_jaculus
ENSG00000105323HNRNPUL19885.227ENSKMAG00000009438HNRNPUL17660.769Kryptolebias_marmoratus
ENSG00000105323HNRNPUL19886.364ENSLBEG00000018092HNRNPUL16974.820Labrus_bergylta
ENSG00000105323HNRNPUL19894.318ENSLACG00000018039HNRNPUL16877.104Latimeria_chalumnae
ENSG00000105323HNRNPUL19888.636ENSLOCG00000014236HNRNPUL16680.576Lepisosteus_oculatus
ENSG00000105323HNRNPUL1100100.000ENSMFAG00000034257HNRNPUL110099.734Macaca_fascicularis
ENSG00000105323HNRNPUL1100100.000ENSMMUG00000008139HNRNPUL110099.734Macaca_mulatta
ENSG00000105323HNRNPUL1100100.000ENSMNEG00000035264HNRNPUL110099.734Macaca_nemestrina
ENSG00000105323HNRNPUL1100100.000ENSMLEG00000024704HNRNPUL110099.734Mandrillus_leucophaeus
ENSG00000105323HNRNPUL19885.227ENSMAMG00000014383HNRNPUL17863.287Mastacembelus_armatus
ENSG00000105323HNRNPUL19885.227ENSMZEG00005024205HNRNPUL17761.377Maylandia_zebra
ENSG00000105323HNRNPUL198100.000ENSMAUG00000020435Hnrnpul18895.922Mesocricetus_auratus
ENSG00000105323HNRNPUL110097.754ENSMICG00000001989HNRNPUL110097.550Microcebus_murinus
ENSG00000105323HNRNPUL198100.000ENSMOCG00000008200Hnrnpul18895.752Microtus_ochrogaster
ENSG00000105323HNRNPUL19884.091ENSMMOG00000004808HNRNPUL17463.666Mola_mola
ENSG00000105323HNRNPUL198100.000MGP_CAROLIEiJ_G0029381Hnrnpul19992.604Mus_caroli
ENSG00000105323HNRNPUL198100.000ENSMUSG00000040725Hnrnpul19992.308Mus_musculus
ENSG00000105323HNRNPUL198100.000MGP_PahariEiJ_G0021234Hnrnpul19992.012Mus_pahari
ENSG00000105323HNRNPUL198100.000MGP_SPRETEiJ_G0030477Hnrnpul19992.308Mus_spretus
ENSG00000105323HNRNPUL110098.383ENSMPUG00000017654HNRNPUL19497.664Mustela_putorius_furo
ENSG00000105323HNRNPUL198100.000ENSNGAG00000017197Hnrnpul18896.574Nannospalax_galili
ENSG00000105323HNRNPUL19885.227ENSNBRG00000004398HNRNPUL17762.826Neolamprologus_brichardi
ENSG00000105323HNRNPUL1100100.000ENSNLEG00000013751HNRNPUL110099.180Nomascus_leucogenys
ENSG00000105323HNRNPUL198100.000ENSOPRG00000008773HNRNPUL110093.349Ochotona_princeps
ENSG00000105323HNRNPUL198100.000ENSODEG00000000913HNRNPUL110096.499Octodon_degus
ENSG00000105323HNRNPUL19885.227ENSONIG00000004004HNRNPUL16778.777Oreochromis_niloticus
ENSG00000105323HNRNPUL198100.000ENSOCUG00000016666HNRNPUL110096.383Oryctolagus_cuniculus
ENSG00000105323HNRNPUL19885.227ENSORLG00000001002HNRNPUL18062.090Oryzias_latipes
ENSG00000105323HNRNPUL19885.227ENSORLG00020020272HNRNPUL17862.980Oryzias_latipes_hni
ENSG00000105323HNRNPUL19885.227ENSORLG00015009059HNRNPUL16973.226Oryzias_latipes_hsok
ENSG00000105323HNRNPUL19886.364ENSOMEG00000021915HNRNPUL17563.014Oryzias_melastigma
ENSG00000105323HNRNPUL110097.886ENSOGAG00000013395-10097.433Otolemur_garnettii
ENSG00000105323HNRNPUL1100100.000ENSPPAG00000038140HNRNPUL19699.214Pan_paniscus
ENSG00000105323HNRNPUL110098.545ENSPPRG00000003397HNRNPUL110098.248Panthera_pardus
ENSG00000105323HNRNPUL1100100.000ENSPTRG00000011019HNRNPUL110099.867Pan_troglodytes
ENSG00000105323HNRNPUL1100100.000ENSPANG00000009467HNRNPUL110099.734Papio_anubis
ENSG00000105323HNRNPUL19890.909ENSPKIG00000017308-7279.496Paramormyrops_kingsleyae
ENSG00000105323HNRNPUL198100.000ENSPEMG00000009618Hnrnpul19793.731Peromyscus_maniculatus_bairdii
ENSG00000105323HNRNPUL19884.091ENSPFOG00000014230HNRNPUL15381.250Poecilia_formosa
ENSG00000105323HNRNPUL19884.091ENSPLAG00000004833HNRNPUL16773.226Poecilia_latipinna
ENSG00000105323HNRNPUL19884.091ENSPREG00000017804HNRNPUL16777.698Poecilia_reticulata
ENSG00000105323HNRNPUL110099.367ENSPPYG00000010011HNRNPUL19995.789Pongo_abelii
ENSG00000105323HNRNPUL198100.000ENSPCAG00000013414HNRNPUL19294.108Procavia_capensis
ENSG00000105323HNRNPUL199100.000ENSPCOG00000020358HNRNPUL110096.886Propithecus_coquereli
ENSG00000105323HNRNPUL19885.227ENSPNYG00000007583HNRNPUL17762.654Pundamilia_nyererei
ENSG00000105323HNRNPUL19888.636ENSPNAG00000019775HNRNPUL18063.677Pygocentrus_nattereri
ENSG00000105323HNRNPUL198100.000ENSRNOG00000020683Hnrnpul18896.078Rattus_norvegicus
ENSG00000105323HNRNPUL1100100.000ENSRBIG00000036625HNRNPUL110099.468Rhinopithecus_bieti
ENSG00000105323HNRNPUL1100100.000ENSRROG00000030124HNRNPUL110099.468Rhinopithecus_roxellana
ENSG00000105323HNRNPUL1100100.000ENSSBOG00000035512HNRNPUL110099.065Saimiri_boliviensis_boliviensis
ENSG00000105323HNRNPUL19892.045ENSSFOG00015022940HNRNPUL16879.859Scleropages_formosus
ENSG00000105323HNRNPUL19888.636ENSSFOG00015007000-8363.691Scleropages_formosus
ENSG00000105323HNRNPUL19887.500ENSSMAG00000020270HNRNPUL16176.259Scophthalmus_maximus
ENSG00000105323HNRNPUL19884.091ENSSDUG00000000399HNRNPUL16977.698Seriola_dumerili
ENSG00000105323HNRNPUL19884.091ENSSLDG00000005140HNRNPUL15976.044Seriola_lalandi_dorsalis
ENSG00000105323HNRNPUL18990.000ENSSPUG00000014431HNRNPUL17568.058Sphenodon_punctatus
ENSG00000105323HNRNPUL19885.227ENSSPAG00000018378HNRNPUL17761.152Stegastes_partitus
ENSG00000105323HNRNPUL19879.545ENSTRUG00000015154HNRNPUL16475.180Takifugu_rubripes
ENSG00000105323HNRNPUL110098.942ENSVVUG00000005386HNRNPUL110098.481Vulpes_vulpes
ENSG00000105323HNRNPUL19881.818ENSXCOG00000012492HNRNPUL16577.338Xiphophorus_couchianus
ENSG00000105323HNRNPUL19881.818ENSXMAG00000004815HNRNPUL16776.978Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005515protein binding12489984.17267598.21516116.22365833.24965446.25416956.IPIFunction
GO:0005634nucleus11513728.IDAComponent
GO:0005654nucleoplasm-IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0006396RNA processing9733834.TASProcess
GO:0009615response to virus-IEAProcess
GO:0019899enzyme binding11513728.IPIFunction

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