EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000105364 (Gene tree)
Gene ID
51073
Gene Symbol
MRPL4
Alias
CGI-28
Full Name
mitochondrial ribosomal protein L4
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
8,160 bases
Position
chr19:10,251,901-10,260,060
Accession
14276
RBP type
canonical RBP
Summary
Mammalian mitochondrial ribosomal proteins are encoded by nuclear genes and help in protein synthesis within the mitochondrion. Mitochondrial ribosomes (mitoribosomes) consist of a small 28S subunit and a large 39S subunit. They have an estimated 75% protein to rRNA composition compared to prokaryotic ribosomes, where this ratio is reversed. Another difference between mammalian mitoribosomes and prokaryotic ribosomes is that the latter contain a 5S rRNA. Among different species, the proteins comprising the mitoribosome differ greatly in sequence, and sometimes in biochemical properties, which prevents easy recognition by sequence homology. This gene encodes a 39S subunit protein. Sequence analysis identified alternatively spliced variants that encode different protein isoforms. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000468569Ribosomal_L4PF00573.226.4e-5411
ENSP00000253099Ribosomal_L4PF00573.227.1e-5411
ENSP00000306902Ribosomal_L4PF00573.227.1e-5411
ENSP00000465143Ribosomal_L4PF00573.223.2e-4711
ENSP00000377334Ribosomal_L4PF00573.226.5e-4711
ENSP00000466169Ribosomal_L4PF00573.222.1e-4511
ENSP00000465050Ribosomal_L4PF00573.229.4e-3811
ENSP00000466050Ribosomal_L4PF00573.221.3e-2611
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000590669MRPL4-2071423-ENSP00000465143263 (aa)-Q9BYD3
ENST00000590150MRPL4-206747-ENSP00000466050163 (aa)-K7ELF1
ENST00000253099MRPL4-2011455-ENSP00000253099311 (aa)-Q9BYD3
ENST00000588963MRPL4-205552--- (aa)--
ENST00000592514MRPL4-2111118-ENSP00000468569300 (aa)-K7ES61
ENST00000591054MRPL4-209777-ENSP00000465635127 (aa)-K7EKI4
ENST00000307422MRPL4-2021320-ENSP00000306902311 (aa)-Q9BYD3
ENST00000393733MRPL4-2031620XM_011528045ENSP00000377334357 (aa)XP_011526347X6RAY8
ENST00000590702MRPL4-208876-ENSP00000465050119 (aa)-K7EJ73
ENST00000592071MRPL4-2101487--- (aa)--
ENST00000588502MRPL4-204827-ENSP00000466169220 (aa)-K7ELQ0
Gene Model
Click here to download ENSG00000105364's gene model file
Pathways
Pathway IDPathway NameSource
hsa03010RibosomeKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000105364Pulse Wave Analysis2.436e-006-
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000105364's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000105364MRPL410074.790ENSAPOG00000010156mrpl48269.076Acanthochromis_polyacanthus
ENSG00000105364MRPL410092.437ENSAMEG00000011808MRPL410081.973Ailuropoda_melanoleuca
ENSG00000105364MRPL410073.109ENSACIG00000011523mrpl49071.552Amphilophus_citrinellus
ENSG00000105364MRPL410074.790ENSAOCG00000018507mrpl47769.076Amphiprion_ocellaris
ENSG00000105364MRPL410074.790ENSAPEG00000006208mrpl48269.076Amphiprion_percula
ENSG00000105364MRPL410072.269ENSATEG00000021694mrpl48268.675Anabas_testudineus
ENSG00000105364MRPL410083.193ENSACAG00000008232MRPL49764.261Anolis_carolinensis
ENSG00000105364MRPL410094.118ENSANAG00000025428MRPL410092.177Aotus_nancymaae
ENSG00000105364MRPL410073.950ENSACLG00000017038mrpl48269.076Astatotilapia_calliptera
ENSG00000105364MRPL47573.034ENSACLG00000011069-9868.687Astatotilapia_calliptera
ENSG00000105364MRPL410078.151ENSAMXG00000002236mrpl48269.355Astyanax_mexicanus
ENSG00000105364MRPL49954.622WBGene00020717mrpl-47448.649Caenorhabditis_elegans
ENSG00000105364MRPL410094.958ENSCJAG00000005764MRPL410089.796Callithrix_jacchus
ENSG00000105364MRPL410089.916ENSCAFG00000017881MRPL410080.952Canis_familiaris
ENSG00000105364MRPL410089.916ENSCAFG00020024405MRPL49681.250Canis_lupus_dingo
ENSG00000105364MRPL410089.916ENSCHIG00000000516MRPL410083.333Capra_hircus
ENSG00000105364MRPL410094.118ENSTSYG00000034805MRPL410083.333Carlito_syrichta
ENSG00000105364MRPL410092.437ENSCAPG00000000036MRPL410089.604Cavia_aperea
ENSG00000105364MRPL410094.118ENSCPOG00000006506MRPL410084.797Cavia_porcellus
ENSG00000105364MRPL49873.469ENSCCAG00000036054MRPL410073.469Cebus_capucinus
ENSG00000105364MRPL410091.597ENSCLAG00000004552MRPL410084.354Chinchilla_lanigera
ENSG00000105364MRPL410096.639ENSCSAG00000007362MRPL410094.932Chlorocebus_sabaeus
ENSG00000105364MRPL410079.832ENSCPBG00000005432MRPL49972.289Chrysemys_picta_bellii
ENSG00000105364MRPL49843.590ENSCING00000003144-7539.241Ciona_intestinalis
ENSG00000105364MRPL49847.009ENSCSAVG00000007005-8339.080Ciona_savignyi
ENSG00000105364MRPL49287.333ENSCANG00000033167MRPL410075.000Colobus_angolensis_palliatus
ENSG00000105364MRPL410091.597ENSCGRG00001013642Mrpl410081.973Cricetulus_griseus_chok1gshd
ENSG00000105364MRPL410091.597ENSCGRG00000012922Mrpl410081.973Cricetulus_griseus_crigri
ENSG00000105364MRPL410074.790ENSCSEG00000020580mrpl48266.667Cynoglossus_semilaevis
ENSG00000105364MRPL48269.388ENSCVAG00000017296mrpl48962.722Cyprinodon_variegatus
ENSG00000105364MRPL410079.832ENSDARG00000058824mrpl49564.460Danio_rerio
ENSG00000105364MRPL410077.311ENSDNOG00000010139-10067.687Dasypus_novemcinctus
ENSG00000105364MRPL410086.555ENSDNOG00000044263-10076.190Dasypus_novemcinctus
ENSG00000105364MRPL410090.756ENSDORG00000003723Mrpl49988.142Dipodomys_ordii
ENSG00000105364MRPL49964.407FBgn0001995mRpL47357.143Drosophila_melanogaster
ENSG00000105364MRPL49989.831ENSETEG00000002009MRPL410079.672Echinops_telfairi
ENSG00000105364MRPL410078.151ENSEBUG00000016597mrpl48068.016Eptatretus_burgeri
ENSG00000105364MRPL410089.076ENSEASG00005010556MRPL49881.293Equus_asinus_asinus
ENSG00000105364MRPL410089.076ENSECAG00000017013MRPL49881.633Equus_caballus
ENSG00000105364MRPL49861.092ENSEEUG00000012011MRPL410061.111Erinaceus_europaeus
ENSG00000105364MRPL49974.576ENSELUG00000010463mrpl48665.019Esox_lucius
ENSG00000105364MRPL410089.916ENSFCAG00000043071MRPL49782.072Felis_catus
ENSG00000105364MRPL410084.874ENSFDAG00000001936MRPL410085.398Fukomys_damarensis
ENSG00000105364MRPL410073.950ENSFHEG00000003126mrpl48269.880Fundulus_heteroclitus
ENSG00000105364MRPL49973.729ENSGMOG00000007229mrpl49263.878Gadus_morhua
ENSG00000105364MRPL410074.790ENSGAFG00000018136mrpl48267.470Gambusia_affinis
ENSG00000105364MRPL410071.429ENSGACG00000019808mrpl48365.873Gasterosteus_aculeatus
ENSG00000105364MRPL410079.832ENSGAGG00000018010MRPL410064.379Gopherus_agassizii
ENSG00000105364MRPL4100100.000ENSGGOG00000036529-10097.759Gorilla_gorilla
ENSG00000105364MRPL410073.950ENSHBUG00000006332mrpl48269.076Haplochromis_burtoni
ENSG00000105364MRPL410089.916ENSHGLG00000007839MRPL410082.432Heterocephalus_glaber_female
ENSG00000105364MRPL410089.916ENSHGLG00100002720MRPL410080.272Heterocephalus_glaber_male
ENSG00000105364MRPL410068.067ENSHCOG00000002016mrpl48564.683Hippocampus_comes
ENSG00000105364MRPL410078.992ENSIPUG00000011705mrpl49662.333Ictalurus_punctatus
ENSG00000105364MRPL410094.118ENSSTOG00000030121MRPL48792.486Ictidomys_tridecemlineatus
ENSG00000105364MRPL410089.916ENSJJAG00000010573Mrpl410081.017Jaculus_jaculus
ENSG00000105364MRPL410074.790ENSKMAG00000012769mrpl48167.871Kryptolebias_marmoratus
ENSG00000105364MRPL410076.471ENSLBEG00000000848mrpl48270.683Labrus_bergylta
ENSG00000105364MRPL49984.746ENSLACG00000009255MRPL49263.787Latimeria_chalumnae
ENSG00000105364MRPL410078.151ENSLOCG00000016632mrpl48668.441Lepisosteus_oculatus
ENSG00000105364MRPL410092.437ENSLAFG00000015366MRPL410082.653Loxodonta_africana
ENSG00000105364MRPL410096.639ENSMFAG00000003526MRPL410093.291Macaca_fascicularis
ENSG00000105364MRPL410096.639ENSMMUG00000001219MRPL410094.595Macaca_mulatta
ENSG00000105364MRPL410096.639ENSMNEG00000040746MRPL410094.257Macaca_nemestrina
ENSG00000105364MRPL49883.502ENSMLEG00000041712MRPL410083.502Mandrillus_leucophaeus
ENSG00000105364MRPL410072.269ENSMAMG00000001736mrpl48367.729Mastacembelus_armatus
ENSG00000105364MRPL410073.950ENSMZEG00005005809mrpl48269.076Maylandia_zebra
ENSG00000105364MRPL48968.868ENSMZEG00005026076-7069.524Maylandia_zebra
ENSG00000105364MRPL47573.034ENSMZEG00005025920-9868.687Maylandia_zebra
ENSG00000105364MRPL410093.277ENSMAUG00000013451Mrpl410082.993Mesocricetus_auratus
ENSG00000105364MRPL410094.958ENSMICG00000010267MRPL410085.619Microcebus_murinus
ENSG00000105364MRPL410091.597ENSMOCG00000014755Mrpl410082.653Microtus_ochrogaster
ENSG00000105364MRPL49469.643ENSMMOG00000013673mrpl48270.270Mola_mola
ENSG00000105364MRPL410087.395ENSMODG00000005476MRPL48283.936Monodelphis_domestica
ENSG00000105364MRPL410073.950ENSMALG00000002391mrpl48169.048Monopterus_albus
ENSG00000105364MRPL410090.756MGP_CAROLIEiJ_G0031854Mrpl410081.973Mus_caroli
ENSG00000105364MRPL410089.916ENSMUSG00000003299Mrpl410080.952Mus_musculus
ENSG00000105364MRPL410089.076MGP_PahariEiJ_G0014720Mrpl410081.293Mus_pahari
ENSG00000105364MRPL410090.756MGP_SPRETEiJ_G0032978Mrpl410081.633Mus_spretus
ENSG00000105364MRPL410089.916ENSMPUG00000006825MRPL410081.293Mustela_putorius_furo
ENSG00000105364MRPL410090.756ENSMLUG00000012280MRPL49789.157Myotis_lucifugus
ENSG00000105364MRPL410088.235ENSNGAG00000014705Mrpl410077.891Nannospalax_galili
ENSG00000105364MRPL410074.790ENSNBRG00000004804mrpl48269.880Neolamprologus_brichardi
ENSG00000105364MRPL410072.951ENSNLEG00000012155-10065.919Nomascus_leucogenys
ENSG00000105364MRPL48083.158ENSMEUG00000002199MRPL49767.589Notamacropus_eugenii
ENSG00000105364MRPL410087.395ENSOPRG00000005735MRPL49980.135Ochotona_princeps
ENSG00000105364MRPL410093.277ENSODEG00000016194MRPL410080.952Octodon_degus
ENSG00000105364MRPL410074.790ENSONIG00000000136mrpl48268.675Oreochromis_niloticus
ENSG00000105364MRPL410087.395ENSOANG00000013891MRPL410077.990Ornithorhynchus_anatinus
ENSG00000105364MRPL49674.522ENSOCUG00000029187-9877.707Oryctolagus_cuniculus
ENSG00000105364MRPL410074.790ENSORLG00000000085mrpl48067.857Oryzias_latipes
ENSG00000105364MRPL410073.950ENSORLG00020020476mrpl48367.063Oryzias_latipes_hni
ENSG00000105364MRPL410073.950ENSORLG00015020892mrpl48367.063Oryzias_latipes_hsok
ENSG00000105364MRPL49472.321ENSOMEG00000010800mrpl48772.321Oryzias_melastigma
ENSG00000105364MRPL410094.118ENSOGAG00000011051MRPL49985.666Otolemur_garnettii
ENSG00000105364MRPL410089.916ENSOARG00000015602MRPL410081.633Ovis_aries
ENSG00000105364MRPL410099.160ENSPPAG00000041740-10099.160Pan_paniscus
ENSG00000105364MRPL410089.076ENSPPRG00000004312MRPL49881.452Panthera_pardus
ENSG00000105364MRPL410089.076ENSPTIG00000010912MRPL49681.673Panthera_tigris_altaica
ENSG00000105364MRPL4100100.000ENSPTRG00000010462MRPL410099.440Pan_troglodytes
ENSG00000105364MRPL410096.639ENSPANG00000001265MRPL410093.291Papio_anubis
ENSG00000105364MRPL49974.576ENSPKIG00000008086mrpl410057.895Paramormyrops_kingsleyae
ENSG00000105364MRPL410080.672ENSPMGG00000002329mrpl49862.500Periophthalmus_magnuspinnatus
ENSG00000105364MRPL410092.437ENSPEMG00000017474Mrpl410083.673Peromyscus_maniculatus_bairdii
ENSG00000105364MRPL410083.193ENSPMAG00000007691mrpl49769.600Petromyzon_marinus
ENSG00000105364MRPL410074.790ENSPFOG00000013329mrpl48267.470Poecilia_formosa
ENSG00000105364MRPL410074.790ENSPLAG00000012864mrpl48267.068Poecilia_latipinna
ENSG00000105364MRPL410074.790ENSPMEG00000004937mrpl48267.470Poecilia_mexicana
ENSG00000105364MRPL410074.790ENSPREG00000021621mrpl49859.076Poecilia_reticulata
ENSG00000105364MRPL410099.160ENSPPYG00000009547MRPL410097.106Pongo_abelii
ENSG00000105364MRPL410089.916ENSPCAG00000002385MRPL49877.500Procavia_capensis
ENSG00000105364MRPL49394.595ENSPCOG00000016733MRPL49982.594Propithecus_coquereli
ENSG00000105364MRPL49965.203ENSPVAG00000003681MRPL49864.706Pteropus_vampyrus
ENSG00000105364MRPL410073.950ENSPNYG00000023505mrpl48569.076Pundamilia_nyererei
ENSG00000105364MRPL49563.717ENSPNYG00000001736mrpl49263.717Pundamilia_nyererei
ENSG00000105364MRPL410080.672ENSPNAG00000011785mrpl47370.683Pygocentrus_nattereri
ENSG00000105364MRPL410090.756ENSRNOG00000020659Mrpl410082.313Rattus_norvegicus
ENSG00000105364MRPL410098.319ENSRBIG00000032283-10095.434Rhinopithecus_bieti
ENSG00000105364MRPL410098.319ENSRROG00000003982MRPL410095.918Rhinopithecus_roxellana
ENSG00000105364MRPL410094.118ENSSBOG00000020666MRPL410090.136Saimiri_boliviensis_boliviensis
ENSG00000105364MRPL410085.714ENSSHAG00000008539MRPL48978.947Sarcophilus_harrisii
ENSG00000105364MRPL410078.151ENSSFOG00015003308mrpl48270.800Scleropages_formosus
ENSG00000105364MRPL49863.248ENSSMAG00000021118mrpl48362.698Scophthalmus_maximus
ENSG00000105364MRPL410073.950ENSSDUG00000002078mrpl48269.880Seriola_dumerili
ENSG00000105364MRPL410073.950ENSSLDG00000015083mrpl48269.880Seriola_lalandi_dorsalis
ENSG00000105364MRPL410074.790ENSSPAG00000010120mrpl48269.880Stegastes_partitus
ENSG00000105364MRPL410092.437ENSSSCG00000013656MRPL410084.477Sus_scrofa
ENSG00000105364MRPL410073.950ENSTRUG00000008532mrpl48573.214Takifugu_rubripes
ENSG00000105364MRPL49878.632ENSTNIG00000003265mrpl48369.323Tetraodon_nigroviridis
ENSG00000105364MRPL410092.437ENSTBEG00000006336MRPL410080.081Tupaia_belangeri
ENSG00000105364MRPL410092.437ENSTTRG00000009532MRPL49979.100Tursiops_truncatus
ENSG00000105364MRPL410092.437ENSUAMG00000020392MRPL48281.600Ursus_americanus
ENSG00000105364MRPL410091.597ENSUMAG00000025105MRPL410082.313Ursus_maritimus
ENSG00000105364MRPL49857.679ENSVPAG00000006123MRPL49957.190Vicugna_pacos
ENSG00000105364MRPL410089.916ENSVVUG00000028961MRPL410080.612Vulpes_vulpes
ENSG00000105364MRPL410076.471ENSXETG00000022060mrpl49958.784Xenopus_tropicalis
ENSG00000105364MRPL410070.248ENSXCOG00000011438mrpl48264.542Xiphophorus_couchianus
ENSG00000105364MRPL410074.790ENSXMAG00000030102mrpl48564.940Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0003735structural constituent of ribosome21873635.IBAFunction
GO:0005515protein binding25416956.IPIFunction
GO:0005739mitochondrion28892042.IDAComponent
GO:0005743mitochondrial inner membrane-TASComponent
GO:0005762mitochondrial large ribosomal subunit25278503.28892042.IDAComponent
GO:0070125mitochondrial translational elongation-TASProcess
GO:0070126mitochondrial translational termination-TASProcess

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