EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Phenotypes
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000105576 (Gene tree)
Gene ID
30000
Gene Symbol
TNPO2
Alias
IPO3|KPNB2B|FLJ12155|TRN2
Full Name
transportin 2
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
24,818 bases
Position
chr19:12,699,194-12,724,011
Accession
19998
RBP type
canonical RBP
Summary
(Transportin 2) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include binding and nuclear localization sequence binding. An important paralog of this gene is TNPO1.
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000349321IBN_NPF03810.192.2e-1511
ENSP00000397379IBN_NPF03810.192.2e-1511
ENSP00000465625IBN_NPF03810.192.2e-1511
ENSP00000407182IBN_NPF03810.192.3e-1511
ENSP00000468434IBN_NPF03810.192.3e-1511
ENSP00000467115IBN_NPF03810.194.3e-1311
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
14981248Transportin2 functions as importin and mediates nuclear import of HuR.Proc Natl Acad Sci U S A2004 Mar 2Guttinger S-
21646354Transportin 2 regulates apoptosis through the RNA-binding protein HuR.J Biol Chem2011 Jul 22von Roretz Cdoi: 10.1074/jbc.M110.216184
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000588491TNPO2-212737-ENSP00000466011119 (aa)-K7ELC3
ENST00000589956TNPO2-216594--- (aa)--
ENST00000588484TNPO2-211545--- (aa)--
ENST00000425528TNPO2-2025122-ENSP00000407182897 (aa)-O14787
ENST00000592287TNPO2-2182914-ENSP00000468434897 (aa)-O14787
ENST00000588216TNPO2-2103056-ENSP00000465625887 (aa)-O14787
ENST00000586775TNPO2-205945-ENSP00000466446109 (aa)-K7ESC1
ENST00000589337TNPO2-214541-ENSP0000046711585 (aa)-K7ENW1
ENST00000587068TNPO2-206377--- (aa)--
ENST00000589572TNPO2-215586-ENSP0000046873951 (aa)-K7ESJ3
ENST00000587155TNPO2-207557--- (aa)--
ENST00000587654TNPO2-208575-ENSP00000468642109 (aa)-K7ESC1
ENST00000450764TNPO2-2034993-ENSP00000397379887 (aa)-O14787
ENST00000585886TNPO2-2042362-ENSP00000468101766 (aa)-A0A075B780
ENST00000356861TNPO2-2014962-ENSP00000349321887 (aa)-O14787
ENST00000589149TNPO2-213564-ENSP00000468698117 (aa)-K7ESG1
ENST00000590781TNPO2-217547-ENSP0000046642156 (aa)-K7EMA3
ENST00000588151TNPO2-209546--- (aa)--
Gene Model
Click here to download ENSG00000105576's gene model file
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000105576Parkinson Disease8.618065E-617052657
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000105576's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000105576TNPO29985.344ENSG00000083312TNPO110087.565
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000105576TNPO210091.071ENSAPOG00000013185-9690.897Acanthochromis_polyacanthus
ENSG00000105576TNPO210093.026ENSAPOG00000009339TNPO210093.026Acanthochromis_polyacanthus
ENSG00000105576TNPO2100100.000ENSAMEG00000012123TNPO210098.105Ailuropoda_melanoleuca
ENSG00000105576TNPO210093.229ENSACIG00000007518tnpo29893.256Amphilophus_citrinellus
ENSG00000105576TNPO210092.448ENSACIG00000009586-10092.358Amphilophus_citrinellus
ENSG00000105576TNPO210092.839ENSAOCG00000010374tnpo210092.801Amphiprion_ocellaris
ENSG00000105576TNPO210093.026ENSAOCG00000010152-10093.026Amphiprion_ocellaris
ENSG00000105576TNPO210092.839ENSAPEG00000008429tnpo210092.801Amphiprion_percula
ENSG00000105576TNPO210093.026ENSAPEG00000013268-10093.026Amphiprion_percula
ENSG00000105576TNPO210092.708ENSATEG00000024761TNPO210092.688Anabas_testudineus
ENSG00000105576TNPO210092.801ENSATEG00000019171-10092.801Anabas_testudineus
ENSG00000105576TNPO2100100.000ENSACAG00000003576TNPO210096.622Anolis_carolinensis
ENSG00000105576TNPO2100100.000ENSANAG00000036645TNPO210099.887Aotus_nancymaae
ENSG00000105576TNPO210090.588ENSACLG00000020672-10086.839Astatotilapia_calliptera
ENSG00000105576TNPO210092.969ENSACLG00000001853tnpo210092.913Astatotilapia_calliptera
ENSG00000105576TNPO210092.941ENSAMXG00000010246tnpo210091.353Astyanax_mexicanus
ENSG00000105576TNPO2100100.000ENSBTAG00000011811TNPO210099.662Bos_taurus
ENSG00000105576TNPO2100100.000ENSCJAG00000005096TNPO210099.889Callithrix_jacchus
ENSG00000105576TNPO2100100.000ENSCAFG00000017226TNPO28599.887Canis_familiaris
ENSG00000105576TNPO2100100.000ENSCAFG00020005115TNPO210099.887Canis_lupus_dingo
ENSG00000105576TNPO2100100.000ENSCHIG00000011718TNPO210096.098Capra_hircus
ENSG00000105576TNPO2100100.000ENSTSYG00000003828TNPO210099.775Carlito_syrichta
ENSG00000105576TNPO29498.093ENSCAPG00000015700TNPO29698.093Cavia_aperea
ENSG00000105576TNPO210099.478ENSCPOG00000007033TNPO210099.436Cavia_porcellus
ENSG00000105576TNPO2100100.000ENSCCAG00000024574TNPO2100100.000Cebus_capucinus
ENSG00000105576TNPO2100100.000ENSCATG00000042599TNPO2100100.000Cercocebus_atys
ENSG00000105576TNPO210099.478ENSCLAG00000013442TNPO210099.443Chinchilla_lanigera
ENSG00000105576TNPO2100100.000ENSCSAG00000006597TNPO2100100.000Chlorocebus_sabaeus
ENSG00000105576TNPO210098.214ENSCPBG00000023892TNPO210096.847Chrysemys_picta_bellii
ENSG00000105576TNPO296100.000ENSCANG00000027834TNPO298100.000Colobus_angolensis_palliatus
ENSG00000105576TNPO2100100.000ENSCGRG00001015917Tnpo210099.889Cricetulus_griseus_chok1gshd
ENSG00000105576TNPO2100100.000ENSCGRG00000012601Tnpo210099.889Cricetulus_griseus_crigri
ENSG00000105576TNPO210091.016ENSCSEG00000011477-10090.827Cynoglossus_semilaevis
ENSG00000105576TNPO210089.286ENSCSEG00000012923tnpo210088.652Cynoglossus_semilaevis
ENSG00000105576TNPO210092.913ENSCVAG00000001908TNPO210092.913Cyprinodon_variegatus
ENSG00000105576TNPO210092.857ENSCVAG00000002750tnpo210091.348Cyprinodon_variegatus
ENSG00000105576TNPO210090.588ENSDARG00000113296LO017722.18989.908Danio_rerio
ENSG00000105576TNPO210091.071ENSDARG00000038239tnpo210089.876Danio_rerio
ENSG00000105576TNPO2100100.000ENSDNOG00000043264TNPO28489.359Dasypus_novemcinctus
ENSG00000105576TNPO2100100.000ENSDORG00000014993Tnpo2100100.000Dipodomys_ordii
ENSG00000105576TNPO210072.483FBgn0024921Tnpo10072.371Drosophila_melanogaster
ENSG00000105576TNPO2100100.000ENSETEG00000014785TNPO29291.509Echinops_telfairi
ENSG00000105576TNPO2100100.000ENSEASG00005004160TNPO210099.662Equus_asinus_asinus
ENSG00000105576TNPO2100100.000ENSECAG00000013673TNPO210099.775Equus_caballus
ENSG00000105576TNPO210092.857ENSELUG00000008680tnpo210092.342Esox_lucius
ENSG00000105576TNPO210090.588ENSELUG00000016542-9983.526Esox_lucius
ENSG00000105576TNPO2100100.000ENSFCAG00000000467TNPO210099.777Felis_catus
ENSG00000105576TNPO210099.608ENSFDAG00000021543TNPO210099.554Fukomys_damarensis
ENSG00000105576TNPO210092.578ENSFHEG00000009734TNPO29992.442Fundulus_heteroclitus
ENSG00000105576TNPO210091.573ENSFHEG00000016501tnpo210091.573Fundulus_heteroclitus
ENSG00000105576TNPO210092.857ENSGMOG00000009021tnpo210085.090Gadus_morhua
ENSG00000105576TNPO210091.765ENSGMOG00000014237-9090.865Gadus_morhua
ENSG00000105576TNPO210091.910ENSGAFG00000018993tnpo210091.910Gambusia_affinis
ENSG00000105576TNPO210092.913ENSGAFG00000010401TNPO210092.913Gambusia_affinis
ENSG00000105576TNPO2100100.000ENSGAGG00000010150TNPO210096.959Gopherus_agassizii
ENSG00000105576TNPO210092.913ENSHBUG00000018317-10092.913Haplochromis_burtoni
ENSG00000105576TNPO210092.969ENSHBUG00000014849tnpo210092.913Haplochromis_burtoni
ENSG00000105576TNPO210099.478ENSHGLG00000016928TNPO210099.436Heterocephalus_glaber_female
ENSG00000105576TNPO210098.885ENSHGLG00100009938TNPO210098.885Heterocephalus_glaber_male
ENSG00000105576TNPO210092.913ENSHCOG00000020440-10092.913Hippocampus_comes
ENSG00000105576TNPO210091.564ENSHCOG00000005914tnpo210091.564Hippocampus_comes
ENSG00000105576TNPO210092.941ENSIPUG00000005768tnpo210092.576Ictalurus_punctatus
ENSG00000105576TNPO210092.238ENSIPUG00000006884TNPO29992.238Ictalurus_punctatus
ENSG00000105576TNPO2100100.000ENSSTOG00000006952TNPO210099.777Ictidomys_tridecemlineatus
ENSG00000105576TNPO2100100.000ENSJJAG00000016820Tnpo210099.777Jaculus_jaculus
ENSG00000105576TNPO210092.801ENSKMAG00000018430TNPO210092.801Kryptolebias_marmoratus
ENSG00000105576TNPO210091.071ENSKMAG00000021274TNPO210090.643Kryptolebias_marmoratus
ENSG00000105576TNPO210093.251ENSLBEG00000005301-10093.251Labrus_bergylta
ENSG00000105576TNPO210092.913ENSLBEG00000026241tnpo210092.913Labrus_bergylta
ENSG00000105576TNPO210091.206ENSLACG00000012322TNPO29991.206Latimeria_chalumnae
ENSG00000105576TNPO210094.151ENSLOCG00000006178tnpo29994.151Lepisosteus_oculatus
ENSG00000105576TNPO2100100.000ENSLAFG00000003661TNPO210099.554Loxodonta_africana
ENSG00000105576TNPO2100100.000ENSMFAG00000037531TNPO2100100.000Macaca_fascicularis
ENSG00000105576TNPO2100100.000ENSMMUG00000005684TNPO2100100.000Macaca_mulatta
ENSG00000105576TNPO2100100.000ENSMNEG00000041024TNPO2100100.000Macaca_nemestrina
ENSG00000105576TNPO296100.000ENSMLEG00000018391TNPO298100.000Mandrillus_leucophaeus
ENSG00000105576TNPO210091.226ENSMAMG00000023658tnpo210091.121Mastacembelus_armatus
ENSG00000105576TNPO210093.026ENSMAMG00000011862-10093.026Mastacembelus_armatus
ENSG00000105576TNPO210091.071ENSMZEG00005011298TNPO210088.989Maylandia_zebra
ENSG00000105576TNPO210092.969ENSMZEG00005023965tnpo210092.913Maylandia_zebra
ENSG00000105576TNPO210092.913ENSMZEG00005007408-10092.913Maylandia_zebra
ENSG00000105576TNPO2100100.000ENSMAUG00000007313-100100.000Mesocricetus_auratus
ENSG00000105576TNPO2100100.000ENSMICG00000016153TNPO2100100.000Microcebus_murinus
ENSG00000105576TNPO2100100.000ENSMOCG00000016489Tnpo210099.887Microtus_ochrogaster
ENSG00000105576TNPO210091.071ENSMMOG00000005063TNPO29387.419Mola_mola
ENSG00000105576TNPO210092.448ENSMMOG00000021390TNPO29992.477Mola_mola
ENSG00000105576TNPO210099.083ENSMODG00000006888TNPO210097.887Monodelphis_domestica
ENSG00000105576TNPO210091.339ENSMALG00000004721tnpo210091.676Monopterus_albus
ENSG00000105576TNPO210092.913ENSMALG00000006232TNPO210092.913Monopterus_albus
ENSG00000105576TNPO2100100.000MGP_CAROLIEiJ_G0031326Tnpo210099.666Mus_caroli
ENSG00000105576TNPO2100100.000ENSMUSG00000031691Tnpo2100100.000Mus_musculus
ENSG00000105576TNPO210099.478MGP_PahariEiJ_G0022931Tnpo210099.443Mus_pahari
ENSG00000105576TNPO2100100.000MGP_SPRETEiJ_G0032445Tnpo210099.666Mus_spretus
ENSG00000105576TNPO2100100.000ENSMPUG00000004663TNPO210099.887Mustela_putorius_furo
ENSG00000105576TNPO29699.864ENSMLUG00000012669TNPO29999.766Myotis_lucifugus
ENSG00000105576TNPO2100100.000ENSNGAG00000000650Tnpo210099.889Nannospalax_galili
ENSG00000105576TNPO210092.913ENSNBRG00000023849TNPO210092.913Neolamprologus_brichardi
ENSG00000105576TNPO210091.071ENSNBRG00000006242TNPO210087.739Neolamprologus_brichardi
ENSG00000105576TNPO2100100.000ENSNLEG00000012758TNPO210090.635Nomascus_leucogenys
ENSG00000105576TNPO210091.657ENSMEUG00000016658TNPO210091.657Notamacropus_eugenii
ENSG00000105576TNPO210099.608ENSODEG00000009670TNPO210099.554Octodon_degus
ENSG00000105576TNPO210092.578ENSONIG00000017706-10092.325Oreochromis_niloticus
ENSG00000105576TNPO210092.839ENSONIG00000002147tnpo210092.801Oreochromis_niloticus
ENSG00000105576TNPO210096.429ENSOANG00000010051TNPO210096.171Ornithorhynchus_anatinus
ENSG00000105576TNPO210099.083ENSOCUG00000008251TNPO29081.194Oryctolagus_cuniculus
ENSG00000105576TNPO210090.588ENSORLG00000011763TNPO29991.400Oryzias_latipes
ENSG00000105576TNPO210092.578ENSORLG00000010363tnpo210092.576Oryzias_latipes
ENSG00000105576TNPO210092.578ENSORLG00020015785tnpo210092.576Oryzias_latipes_hni
ENSG00000105576TNPO210090.588ENSORLG00020001020TNPO29991.200Oryzias_latipes_hni
ENSG00000105576TNPO210092.559ENSORLG00015005489tnpo210092.559Oryzias_latipes_hsok
ENSG00000105576TNPO210090.588ENSORLG00015003941TNPO29991.400Oryzias_latipes_hsok
ENSG00000105576TNPO210093.251ENSOMEG00000013440TNPO210093.251Oryzias_melastigma
ENSG00000105576TNPO210092.578ENSOMEG00000014877TNPO210092.576Oryzias_melastigma
ENSG00000105576TNPO2100100.000ENSOARG00000011717TNPO29299.746Ovis_aries
ENSG00000105576TNPO2100100.000ENSPPAG00000019494TNPO2100100.000Pan_paniscus
ENSG00000105576TNPO2100100.000ENSPPRG00000003075TNPO210099.777Panthera_pardus
ENSG00000105576TNPO29699.048ENSPTIG00000011213TNPO29793.617Panthera_tigris_altaica
ENSG00000105576TNPO2100100.000ENSPTRG00000010535TNPO2100100.000Pan_troglodytes
ENSG00000105576TNPO2100100.000ENSPANG00000016857TNPO2100100.000Papio_anubis
ENSG00000105576TNPO210085.714ENSPKIG00000018545-7176.667Paramormyrops_kingsleyae
ENSG00000105576TNPO29791.264ENSPKIG00000002899-9992.419Paramormyrops_kingsleyae
ENSG00000105576TNPO210092.463ENSPKIG00000004824tnpo210092.463Paramormyrops_kingsleyae
ENSG00000105576TNPO210096.429ENSPSIG00000010215TNPO210092.794Pelodiscus_sinensis
ENSG00000105576TNPO210091.071ENSPMGG00000022850tnpo29991.383Periophthalmus_magnuspinnatus
ENSG00000105576TNPO210092.448ENSPMGG00000016459TNPO29991.892Periophthalmus_magnuspinnatus
ENSG00000105576TNPO2100100.000ENSPEMG00000018702Tnpo210099.889Peromyscus_maniculatus_bairdii
ENSG00000105576TNPO29996.241ENSPCIG00000015327TNPO29796.241Phascolarctos_cinereus
ENSG00000105576TNPO210091.685ENSPFOG00000012466tnpo210091.798Poecilia_formosa
ENSG00000105576TNPO210093.026ENSPFOG00000005417TNPO210093.026Poecilia_formosa
ENSG00000105576TNPO210091.798ENSPLAG00000018842tnpo210091.910Poecilia_latipinna
ENSG00000105576TNPO210092.708ENSPLAG00000010687TNPO29793.004Poecilia_latipinna
ENSG00000105576TNPO210091.798ENSPMEG00000006069tnpo210091.910Poecilia_mexicana
ENSG00000105576TNPO210093.026ENSPMEG00000014011-10093.026Poecilia_mexicana
ENSG00000105576TNPO210093.026ENSPREG00000000415TNPO29993.026Poecilia_reticulata
ENSG00000105576TNPO210091.910ENSPREG00000001121TNPO210092.022Poecilia_reticulata
ENSG00000105576TNPO2100100.000ENSPPYG00000009602TNPO2100100.000Pongo_abelii
ENSG00000105576TNPO29994.444ENSPCAG00000014916TNPO210090.889Procavia_capensis
ENSG00000105576TNPO2100100.000ENSPCOG00000018386TNPO2100100.000Propithecus_coquereli
ENSG00000105576TNPO2100100.000ENSPVAG00000013411TNPO210095.768Pteropus_vampyrus
ENSG00000105576TNPO210092.839ENSPNYG00000013748tnpo210092.801Pundamilia_nyererei
ENSG00000105576TNPO210090.588ENSPNYG00000001235-10086.839Pundamilia_nyererei
ENSG00000105576TNPO210092.801ENSPNAG00000026208-10092.801Pygocentrus_nattereri
ENSG00000105576TNPO210092.941ENSPNAG00000024491tnpo210092.576Pygocentrus_nattereri
ENSG00000105576TNPO2100100.000ENSRNOG00000003970Tnpo29799.662Rattus_norvegicus
ENSG00000105576TNPO2100100.000ENSRBIG00000036652TNPO2100100.000Rhinopithecus_bieti
ENSG00000105576TNPO2100100.000ENSRROG00000040402TNPO2100100.000Rhinopithecus_roxellana
ENSG00000105576TNPO2100100.000ENSSBOG00000019551TNPO2100100.000Saimiri_boliviensis_boliviensis
ENSG00000105576TNPO29797.558ENSSHAG00000015858TNPO210097.558Sarcophilus_harrisii
ENSG00000105576TNPO210091.582ENSSFOG00015010934tnpo210091.901Scleropages_formosus
ENSG00000105576TNPO210093.588ENSSFOG00015018955TNPO210093.813Scleropages_formosus
ENSG00000105576TNPO210092.801ENSSMAG00000004050-10092.801Scophthalmus_maximus
ENSG00000105576TNPO210093.138ENSSMAG00000012008tnpo210093.138Scophthalmus_maximus
ENSG00000105576TNPO210093.026ENSSDUG00000002607TNPO210093.026Seriola_dumerili
ENSG00000105576TNPO210092.913ENSSDUG00000001767tnpo210092.913Seriola_dumerili
ENSG00000105576TNPO210092.913ENSSLDG00000025629tnpo210092.913Seriola_lalandi_dorsalis
ENSG00000105576TNPO210093.138ENSSLDG00000013107-10093.138Seriola_lalandi_dorsalis
ENSG00000105576TNPO28299.500ENSSARG00000003825TNPO28699.500Sorex_araneus
ENSG00000105576TNPO2100100.000ENSSPUG00000000736TNPO210096.529Sphenodon_punctatus
ENSG00000105576TNPO210092.839ENSSPAG00000008512tnpo210092.801Stegastes_partitus
ENSG00000105576TNPO210090.899ENSSPAG00000008511-10090.899Stegastes_partitus
ENSG00000105576TNPO2100100.000ENSSSCG00000013726TNPO210099.889Sus_scrofa
ENSG00000105576TNPO210093.026ENSTRUG00000009453TNPO210093.026Takifugu_rubripes
ENSG00000105576TNPO210091.451ENSTRUG00000012698tnpo29991.451Takifugu_rubripes
ENSG00000105576TNPO210089.286ENSTNIG00000003295TNPO29893.103Tetraodon_nigroviridis
ENSG00000105576TNPO210091.657ENSTNIG00000014071TNPO210091.206Tetraodon_nigroviridis
ENSG00000105576TNPO2100100.000ENSTTRG00000005443TNPO210099.889Tursiops_truncatus
ENSG00000105576TNPO2100100.000ENSUAMG00000019621TNPO210099.666Ursus_americanus
ENSG00000105576TNPO2100100.000ENSUMAG00000006504TNPO29995.759Ursus_maritimus
ENSG00000105576TNPO2100100.000ENSVVUG00000023860TNPO210092.221Vulpes_vulpes
ENSG00000105576TNPO210093.348ENSXETG00000004771tnpo29993.236Xenopus_tropicalis
ENSG00000105576TNPO210092.448ENSXCOG00000014460TNPO29989.651Xiphophorus_couchianus
ENSG00000105576TNPO210092.801ENSXMAG00000012793TNPO210092.801Xiphophorus_maculatus
ENSG00000105576TNPO210091.798ENSXMAG00000014217TNPO210091.910Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0005515protein binding12896982.21044950.21516116.25416956.IPIFunction
GO:0005634nucleus9298975.TASComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0006607NLS-bearing protein import into nucleus21873635.IBAProcess
GO:0006610ribosomal protein import into nucleus21873635.IBAProcess
GO:0008139nuclear localization sequence binding21873635.IBAFunction
GO:0008536Ran GTPase binding-IEAFunction
GO:0008565protein transporter activity21873635.IBAFunction
GO:0031965nuclear membrane21873635.IBAComponent
GO:0034399nuclear periphery21873635.IBAComponent

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