EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • Phenotypes
  • GWAS
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000105618 (Gene tree)
Gene ID
26121
Gene Symbol
PRPF31
Alias
NY-BR-99|PRP31|hPrp31|SNRNP61|RP11
Full Name
pre-mRNA processing factor 31
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Plus strand
Length
16,344 bases
Position
chr19:54,115,376-54,131,719
Accession
15446
RBP type
canonical RBP
Summary
This gene encodes a component of the spliceosome complex and is one of several retinitis pigmentosa-causing genes. When the gene product is added to the spliceosome complex, activation occurs.[provided by RefSeq, Jan 2009]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000324122Prp31_CPF09785.93.6e-4511
ENSP00000375635Prp31_CPF09785.93.6e-4511
ENSP00000405166Prp31_CPF09785.92.3e-3311
ENSP00000405166NopPF01798.182.2e-8311
ENSP00000324122NopPF01798.182.3e-8311
ENSP00000375635NopPF01798.181.9e-7911
ENSP00000395894NopPF01798.181.4e-6411
ENSP00000408980NopPF01798.183.7e-6111
ENSP00000395089NopPF01798.182.6e-5711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
12374753Hierarchical, clustered protein interactions with U4/U6 snRNA: a biochemical role for U4/U6 proteins.EMBO J2002 Oct 15Nottrott S-
26161500A composite double-/single-stranded RNA-binding region in protein Prp3 supports tri-snRNP stability and splicing.Elife2015 Jul 10Liu Sdoi: 10.7554/eLife.07320.
30099644A novel mutation in the PRPF31 in a North Indian adRP family with incomplete penetrance.Doc Ophthalmol2018 OctBhatia Sdoi: 10.1007/s10633-018-9654-x
26503251Assembly and dynamics of the U4/U6 di-snRNP by single-molecule FRET.Nucleic Acids Res2015 Dec 15Hardin JWdoi: 10.1093/nar/gkv1011
16857676RNA structural requirements for the association of the spliceosomal hPrp31 protein with the U4 and U4atac small nuclear ribonucleoproteins.J Biol Chem2006 Sep 22Schultz A-
17412961Binding of the human Prp31 Nop domain to a composite RNA-protein platform in U4 snRNP.Science2007 Apr 6Liu S-
21784869Structural basis for the dual U4 and U4atac snRNA-binding specificity of spliceosomal protein hPrp31.RNA2011 SepLiu Sdoi: 10.1261/rna.2690611
21385873CTNNBL1 is a novel nuclear localization sequence-binding protein that recognizes RNA-splicing factors CDC5L and Prp31.J Biol Chem2011 May 13Ganesh Kdoi: 10.1074/jbc.M110.208769
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000466404PRPF31-2071837--- (aa)--
ENST00000419967PRPF31-2032269-ENSP00000405166491 (aa)-Q8WWY3
ENST00000498612PRPF31-209881--- (aa)--
ENST00000321030PRPF31-2012126XM_006723137ENSP00000324122499 (aa)XP_006723200Q8WWY3
ENST00000447810PRPF31-206854-ENSP00000395089260 (aa)-E7EU94
ENST00000445811PRPF31-205928-ENSP00000395894284 (aa)-E7EN72
ENST00000391755PRPF31-2021767-ENSP00000375635493 (aa)-E7EVX8
ENST00000467851PRPF31-208289--- (aa)--
ENST00000445124PRPF31-204886-ENSP00000408980276 (aa)-E7ESX0
Gene Model
Click here to download ENSG00000105618's gene model file
Pathways
Pathway IDPathway NameSource
hsa03040SpliceosomeKEGG
Phenotypes
ensgIDTraitpValuePubmed ID
ENSG00000105618Triglycerides7.3930000E-005-
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000105618rs2542711954127382?Change in HbA1c levels in response to metformin treatment in type 2 diabetes29650774EFO_0004541|EFO_0001360|GO_1901558
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000105618's network

* RBP PPI network refers to all genes directly bind to RBP
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000105618PRPF319385.745ENSAPOG00000020310prpf319785.745Acanthochromis_polyacanthus
ENSG00000105618PRPF3110099.648ENSAMEG00000004502PRPF3110099.399Ailuropoda_melanoleuca
ENSG00000105618PRPF319983.168ENSACIG00000006591prpf319186.177Amphilophus_citrinellus
ENSG00000105618PRPF319983.773ENSAOCG00000021333prpf319385.652Amphiprion_ocellaris
ENSG00000105618PRPF319983.773ENSAPEG00000008035prpf319385.652Amphiprion_percula
ENSG00000105618PRPF319982.970ENSATEG00000022705prpf319185.745Anabas_testudineus
ENSG00000105618PRPF319694.990ENSACAG00000016061PRPF319495.745Anolis_carolinensis
ENSG00000105618PRPF318499.761ENSANAG00000020822PRPF3110099.761Aotus_nancymaae
ENSG00000105618PRPF319983.532ENSACLG00000021238prpf319185.961Astatotilapia_calliptera
ENSG00000105618PRPF319982.961ENSAMXG00000012329prpf319384.017Astyanax_mexicanus
ENSG00000105618PRPF3110099.648ENSBTAG00000007757PRPF3110099.399Bos_taurus
ENSG00000105618PRPF3110041.980WBGene00022458prp-319147.174Caenorhabditis_elegans
ENSG00000105618PRPF31100100.000ENSCJAG00000018525PRPF31100100.000Callithrix_jacchus
ENSG00000105618PRPF3110099.648ENSCAFG00000002700PRPF3110099.599Canis_familiaris
ENSG00000105618PRPF3110099.648ENSCAFG00020018376PRPF3110099.599Canis_lupus_dingo
ENSG00000105618PRPF3110099.648ENSCHIG00000021020PRPF319495.532Capra_hircus
ENSG00000105618PRPF3110098.998ENSTSYG00000013569PRPF3110098.998Carlito_syrichta
ENSG00000105618PRPF3110099.296ENSCAPG00000013797PRPF3110098.597Cavia_aperea
ENSG00000105618PRPF3110099.296ENSCPOG00000011507PRPF3110098.597Cavia_porcellus
ENSG00000105618PRPF31100100.000ENSCCAG00000020552-100100.000Cebus_capucinus
ENSG00000105618PRPF319289.107ENSCCAG00000022236-9889.107Cebus_capucinus
ENSG00000105618PRPF3110099.800ENSCATG00000006020PRPF3110099.800Cercocebus_atys
ENSG00000105618PRPF3110098.944ENSCLAG00000001700PRPF3110098.397Chinchilla_lanigera
ENSG00000105618PRPF31100100.000ENSCSAG00000001903PRPF31100100.000Chlorocebus_sabaeus
ENSG00000105618PRPF315499.286ENSCHOG00000008394-5499.286Choloepus_hoffmanni
ENSG00000105618PRPF318995.711ENSCPBG00000011670PRPF319295.711Chrysemys_picta_bellii
ENSG00000105618PRPF318356.561ENSCING00000002806-8557.979Ciona_intestinalis
ENSG00000105618PRPF319862.772ENSCSAVG00000010862-8763.812Ciona_savignyi
ENSG00000105618PRPF3110099.800ENSCANG00000029967PRPF3110099.800Colobus_angolensis_palliatus
ENSG00000105618PRPF3110099.399ENSCGRG00001004873Prpf3110099.399Cricetulus_griseus_chok1gshd
ENSG00000105618PRPF319498.929ENSCGRG00000012910Prpf3110098.929Cricetulus_griseus_crigri
ENSG00000105618PRPF319882.400ENSCSEG00000018961prpf319185.033Cynoglossus_semilaevis
ENSG00000105618PRPF319984.990ENSCVAG00000000226prpf319385.931Cyprinodon_variegatus
ENSG00000105618PRPF319982.213ENSDARG00000095904prpf319185.345Danio_rerio
ENSG00000105618PRPF3110099.399ENSDNOG00000032884PRPF319999.399Dasypus_novemcinctus
ENSG00000105618PRPF3110099.198ENSDORG00000008022Prpf3110099.198Dipodomys_ordii
ENSG00000105618PRPF319860.239FBgn0036487Prp318963.252Drosophila_melanogaster
ENSG00000105618PRPF318398.291ENSETEG00000017891PRPF318298.291Echinops_telfairi
ENSG00000105618PRPF316275.141ENSEBUG00000004819prpf319055.820Eptatretus_burgeri
ENSG00000105618PRPF3110099.648ENSEASG00005021593PRPF3110099.599Equus_asinus_asinus
ENSG00000105618PRPF3110099.648ENSECAG00000020667PRPF3110099.599Equus_caballus
ENSG00000105618PRPF317790.885ENSEEUG00000006128PRPF3110090.885Erinaceus_europaeus
ENSG00000105618PRPF319982.271ENSELUG00000014820prpf319483.051Esox_lucius
ENSG00000105618PRPF3110099.648ENSFCAG00000014037PRPF3110099.599Felis_catus
ENSG00000105618PRPF3110099.296ENSFDAG00000011961PRPF3110098.798Fukomys_damarensis
ENSG00000105618PRPF318289.944ENSFHEG00000003642prpf316688.268Fundulus_heteroclitus
ENSG00000105618PRPF319981.386ENSGMOG00000005345prpf318983.766Gadus_morhua
ENSG00000105618PRPF319984.584ENSGAFG00000013128prpf319485.714Gambusia_affinis
ENSG00000105618PRPF319981.584ENSGACG00000011464prpf319184.449Gasterosteus_aculeatus
ENSG00000105618PRPF319694.979ENSGAGG00000000670PRPF319495.957Gopherus_agassizii
ENSG00000105618PRPF31100100.000ENSGGOG00000016516PRPF31100100.000Gorilla_gorilla
ENSG00000105618PRPF319983.333ENSHBUG00000005311prpf319185.745Haplochromis_burtoni
ENSG00000105618PRPF3110098.592ENSHGLG00000010504PRPF3110098.196Heterocephalus_glaber_female
ENSG00000105618PRPF3110098.592ENSHGLG00100005911PRPF3110087.221Heterocephalus_glaber_male
ENSG00000105618PRPF319981.386ENSHCOG00000020890prpf319184.233Hippocampus_comes
ENSG00000105618PRPF319981.782ENSIPUG00000000171prpf319184.449Ictalurus_punctatus
ENSG00000105618PRPF3110099.296ENSSTOG00000001287PRPF3110099.198Ictidomys_tridecemlineatus
ENSG00000105618PRPF3110099.648ENSJJAG00000015594Prpf3110099.599Jaculus_jaculus
ENSG00000105618PRPF319982.376ENSKMAG00000004967prpf319185.313Kryptolebias_marmoratus
ENSG00000105618PRPF319982.574ENSLBEG00000017225prpf319185.097Labrus_bergylta
ENSG00000105618PRPF319381.385ENSLACG00000009449PRPF319381.385Latimeria_chalumnae
ENSG00000105618PRPF319976.699ENSLOCG00000000007prpf319079.574Lepisosteus_oculatus
ENSG00000105618PRPF3110099.648ENSLAFG00000004559PRPF3110099.399Loxodonta_africana
ENSG00000105618PRPF31100100.000ENSMFAG00000001108PRPF31100100.000Macaca_fascicularis
ENSG00000105618PRPF31100100.000ENSMMUG00000022297PRPF31100100.000Macaca_mulatta
ENSG00000105618PRPF31100100.000ENSMNEG00000035943PRPF31100100.000Macaca_nemestrina
ENSG00000105618PRPF31100100.000ENSMLEG00000031953PRPF31100100.000Mandrillus_leucophaeus
ENSG00000105618PRPF319983.168ENSMAMG00000019433prpf319185.714Mastacembelus_armatus
ENSG00000105618PRPF319983.532ENSMZEG00005016314prpf319185.961Maylandia_zebra
ENSG00000105618PRPF3110099.296ENSMAUG00000011581Prpf3110099.198Mesocricetus_auratus
ENSG00000105618PRPF3110099.648ENSMICG00000002355PRPF3110099.399Microcebus_murinus
ENSG00000105618PRPF3110099.399ENSMOCG00000002128Prpf3110099.399Microtus_ochrogaster
ENSG00000105618PRPF319981.386ENSMMOG00000016451prpf319184.881Mola_mola
ENSG00000105618PRPF3110097.194ENSMODG00000004098PRPF3110097.194Monodelphis_domestica
ENSG00000105618PRPF319982.591ENSMALG00000009251prpf319383.948Monopterus_albus
ENSG00000105618PRPF3110099.399MGP_CAROLIEiJ_G0029094Prpf3110099.399Mus_caroli
ENSG00000105618PRPF3110098.998ENSMUSG00000008373Prpf3110098.998Mus_musculus
ENSG00000105618PRPF3110098.998MGP_PahariEiJ_G0020963Prpf3110098.998Mus_pahari
ENSG00000105618PRPF3110099.296MGP_SPRETEiJ_G0030147Prpf319999.595Mus_spretus
ENSG00000105618PRPF3110099.648ENSMPUG00000010341PRPF3110099.599Mustela_putorius_furo
ENSG00000105618PRPF3110097.101ENSMLUG00000016862PRPF319996.787Myotis_lucifugus
ENSG00000105618PRPF3110098.798ENSNGAG00000024131Prpf3110098.798Nannospalax_galili
ENSG00000105618PRPF319983.333ENSNBRG00000002354prpf319185.745Neolamprologus_brichardi
ENSG00000105618PRPF3110089.409ENSNLEG00000006261-10089.409Nomascus_leucogenys
ENSG00000105618PRPF319896.063ENSMEUG00000002943PRPF319389.141Notamacropus_eugenii
ENSG00000105618PRPF315899.298ENSOPRG00000000055PRPF3110098.962Ochotona_princeps
ENSG00000105618PRPF3110099.648ENSODEG00000000855PRPF3110098.798Octodon_degus
ENSG00000105618PRPF319983.532ENSONIG00000006574prpf319185.961Oreochromis_niloticus
ENSG00000105618PRPF319395.437ENSOANG00000009386-9378.517Ornithorhynchus_anatinus
ENSG00000105618PRPF319490.234ENSOCUG00000002027PRPF319490.234Oryctolagus_cuniculus
ENSG00000105618PRPF319984.211ENSORLG00000011189prpf319385.498Oryzias_latipes
ENSG00000105618PRPF319983.976ENSORLG00020007965prpf319385.435Oryzias_latipes_hni
ENSG00000105618PRPF319981.854ENSORLG00015013676prpf319185.498Oryzias_latipes_hsok
ENSG00000105618PRPF319981.657ENSOMEG00000010384prpf319185.097Oryzias_melastigma
ENSG00000105618PRPF316299.674ENSOGAG00000006936PRPF3110099.674Otolemur_garnettii
ENSG00000105618PRPF319599.262ENSOARG00000003033PRPF319586.638Ovis_aries
ENSG00000105618PRPF31100100.000ENSPPAG00000032209PRPF31100100.000Pan_paniscus
ENSG00000105618PRPF3110099.648ENSPPRG00000011686PRPF3110099.599Panthera_pardus
ENSG00000105618PRPF3110099.648ENSPTIG00000008467PRPF3110099.599Panthera_tigris_altaica
ENSG00000105618PRPF31100100.000ENSPTRG00000045480-100100.000Pan_troglodytes
ENSG00000105618PRPF31100100.000ENSPTRG00000011443PRPF31100100.000Pan_troglodytes
ENSG00000105618PRPF31100100.000ENSPANG00000025402PRPF31100100.000Papio_anubis
ENSG00000105618PRPF319982.122ENSPKIG00000011812prpf319185.622Paramormyrops_kingsleyae
ENSG00000105618PRPF316595.356ENSPSIG00000003405PRPF319595.806Pelodiscus_sinensis
ENSG00000105618PRPF318871.605ENSPMGG00000012045prpf318376.238Periophthalmus_magnuspinnatus
ENSG00000105618PRPF3110094.188ENSPEMG00000011678Prpf3110094.188Peromyscus_maniculatus_bairdii
ENSG00000105618PRPF3110097.194ENSPCIG00000014820PRPF3110097.194Phascolarctos_cinereus
ENSG00000105618PRPF319983.168ENSPFOG00000008822prpf319185.961Poecilia_formosa
ENSG00000105618PRPF319982.574ENSPLAG00000013314prpf319185.313Poecilia_latipinna
ENSG00000105618PRPF319984.990ENSPMEG00000017707prpf319386.147Poecilia_mexicana
ENSG00000105618PRPF319982.574ENSPREG00000007764prpf319185.313Poecilia_reticulata
ENSG00000105618PRPF31100100.000ENSPPYG00000010371PRPF31100100.000Pongo_abelii
ENSG00000105618PRPF3110075.150ENSPCAG00000011872PRPF3110075.150Procavia_capensis
ENSG00000105618PRPF3110099.648ENSPCOG00000020393PRPF3110099.399Propithecus_coquereli
ENSG00000105618PRPF3110099.648ENSPVAG00000015562PRPF3110098.798Pteropus_vampyrus
ENSG00000105618PRPF319983.135ENSPNYG00000002232prpf319185.529Pundamilia_nyererei
ENSG00000105618PRPF319981.693ENSPNAG00000003485prpf319184.979Pygocentrus_nattereri
ENSG00000105618PRPF3110099.399ENSRNOG00000061039Prpf3110099.399Rattus_norvegicus
ENSG00000105618PRPF3110099.800ENSRBIG00000034963PRPF3110099.800Rhinopithecus_bieti
ENSG00000105618PRPF3110099.800ENSRROG00000038740PRPF3110099.800Rhinopithecus_roxellana
ENSG00000105618PRPF316631.700YGR091W-7131.073Saccharomyces_cerevisiae
ENSG00000105618PRPF31100100.000ENSSBOG00000028915PRPF31100100.000Saimiri_boliviensis_boliviensis
ENSG00000105618PRPF3110097.194ENSSHAG00000009065PRPF3110097.194Sarcophilus_harrisii
ENSG00000105618PRPF319982.583ENSSFOG00015000288prpf319285.684Scleropages_formosus
ENSG00000105618PRPF319982.376ENSSMAG00000013211prpf319185.097Scophthalmus_maximus
ENSG00000105618PRPF319984.040ENSSDUG00000008360prpf319384.017Seriola_dumerili
ENSG00000105618PRPF319974.749ENSSLDG00000002851prpf319177.243Seriola_lalandi_dorsalis
ENSG00000105618PRPF319694.154ENSSPUG00000008622PRPF319494.894Sphenodon_punctatus
ENSG00000105618PRPF319978.571ENSSPAG00000022547prpf319281.224Stegastes_partitus
ENSG00000105618PRPF3110098.597ENSSSCG00000003263PRPF3110098.597Sus_scrofa
ENSG00000105618PRPF319981.151ENSTRUG00000015769prpf319184.416Takifugu_rubripes
ENSG00000105618PRPF319981.102ENSTNIG00000008083prpf319184.120Tetraodon_nigroviridis
ENSG00000105618PRPF319486.200ENSTTRG00000006566PRPF319484.926Tursiops_truncatus
ENSG00000105618PRPF3110099.648ENSUAMG00000005241PRPF3110099.599Ursus_americanus
ENSG00000105618PRPF3110099.648ENSUMAG00000011212PRPF3110099.599Ursus_maritimus
ENSG00000105618PRPF3110099.648ENSVVUG00000008257PRPF3110099.599Vulpes_vulpes
ENSG00000105618PRPF319591.139ENSXETG00000010916prpf319492.291Xenopus_tropicalis
ENSG00000105618PRPF319984.381ENSXCOG00000019456prpf319485.281Xiphophorus_couchianus
ENSG00000105618PRPF319984.584ENSXMAG00000012272prpf319485.498Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000244spliceosomal tri-snRNP complex assembly11867543.IDAProcess
GO:0000244spliceosomal tri-snRNP complex assembly15257298.IMPProcess
GO:0000398mRNA splicing, via spliceosome21873635.IBAProcess
GO:0000398mRNA splicing, via spliceosome15257298.ICProcess
GO:0000398mRNA splicing, via spliceosome11867543.28781166.IDAProcess
GO:0000398mRNA splicing, via spliceosome-TASProcess
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005515protein binding21385873.22365833.23793891.25416956.25910212.27107012.IPIFunction
GO:0005634nucleus26912367.28781166.IDAComponent
GO:0005654nucleoplasm-TASComponent
GO:0005684U2-type spliceosomal complex17412961.ICComponent
GO:0005687U4 snRNP21873635.IBAComponent
GO:0005687U4 snRNP17412961.IDAComponent
GO:0005690U4atac snRNP21784869.IDAComponent
GO:0005690U4atac snRNP17412961.TASComponent
GO:0015030Cajal body11867543.IDAComponent
GO:0016607nuclear speck11867543.IDAComponent
GO:0030621U4 snRNA binding16857676.IDAFunction
GO:0030622U4atac snRNA binding16857676.21784869.IDAFunction
GO:0043021ribonucleoprotein complex binding11867543.IDAFunction
GO:0046540U4/U6 x U5 tri-snRNP complex11867543.23793891.26912367.IDAComponent
GO:0048254snoRNA localization17636026.IMPProcess
GO:0070990snRNP binding17412961.IPIFunction
GO:0071005U2-type precatalytic spliceosome28781166.IDAComponent
GO:0071166ribonucleoprotein complex localization17636026.IMPProcess
GO:0071339MLL1 complex15960975.IDAComponent

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