EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • GWAS
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000107929 (Gene tree)
Gene ID
23185
Gene Symbol
LARP4B
Alias
KIAA0217|LARP5
Full Name
La ribonucleoprotein domain family member 4B
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
181,410 bases
Position
chr10:806,914-988,323
Accession
28987
RBP type
canonical RBP
Summary
This gene encodes a member of an evolutionarily conserved protein family implicated in RNA metabolism and translation. Members of this family are characterized by the presence of an La motif, which is often located adjacent to one or more RNA recognition motifs (RRM). Together, the two motifs constitute the functional region of the protein and enable its interaction with the RNA substrate. This protein family is divided into five sub-families: the genuine La proteins and four La-related protein (LARP) sub-families. The protein encoded by this gene belongs to LARP sub-family 4. It is a cytoplasmic protein that may play a stimulatory role in translation. [provided by RefSeq, Oct 2012]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000326128LaPF05383.179.2e-1411
ENSP00000482767LaPF05383.179.2e-1411
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
27453046Comprehensive Identification of RNA-Binding Domains in Human CellsRIC & Hela2016 Aug 18Castello ADOI: 10.1016/j.molcel.2016.06.029
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
26001795LARP4B is an AU-rich sequence associated factor that promotes mRNA accumulation and translation.RNA2015 JulKuspert Mdoi: 10.1261/rna.051441.115
26933087Identification of RNA-Binding Protein LARP4B as a Tumor Suppressor in Glioma.Cancer Res2016 Apr 15Koso Hdoi: 10.1158/0008-5472.CAN-15-2308
29462618Overexpression of Larp4B downregulates dMyc and reduces cell and organ sizes in Drosophila.Biochem Biophys Res Commun2018 Mar 4Funakoshi Mdoi: 10.1016/j.bbrc.2018.02.148
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000316157LARP4B-2015642XM_005252435ENSP00000326128738 (aa)XP_005252492Q92615
ENST00000412411LARP4B-203432-ENSP0000039055657 (aa)-X6RCG6
ENST00000612396LARP4B-2118546-ENSP00000482767738 (aa)-Q92615
ENST00000608970LARP4B-209656--- (aa)--
ENST00000469487LARP4B-206859--- (aa)--
ENST00000440895LARP4B-204656-ENSP00000403018190 (aa)-H0Y641
ENST00000609318LARP4B-2104848--- (aa)--
ENST00000476529LARP4B-207613-ENSP0000047678679 (aa)-V9GYI5
ENST00000448368LARP4B-2051438-ENSP00000394545339 (aa)-H0Y4V9
ENST00000406525LARP4B-202681-ENSP00000385229131 (aa)-B5MCU2
ENST00000481118LARP4B-208421--- (aa)--
ENST00000614908LARP4B-2121826-ENSP00000483973153 (aa)-A0A087X183
Gene Model
Click here to download ENSG00000107929's gene model file
GWAS
ensgIDSNPChromosomePositionSNP-risk TraitPubmedID95% CIOr or BEAT EFO ID
ENSG00000107929rs14153608710808752GCGCAProstate cancer (advanced)29892016[NR]1.09EFO_0001663
ENSG00000107929rs14153608710808752GCGCAProstate cancer (early onset)29892016[NR]1.13EFO_0001663
ENSG00000107929rs8028210310853131AGlomerular filtration rate (creatinine)28452372[0.009-0.0156] unit increase0.0123EFO_0005208|EFO_0004518
ENSG00000107929rs1276297310914821GWhite blood cell count (basophil)27863252[0.03-0.046] unit increase0.03820732EFO_0005090
ENSG00000107929rs1276297310914821GBasophil percentage of white cells27863252[0.028-0.043] unit increase0.03549908EFO_0007992
ENSG00000107929rs1225933810923437TNeutrophil percentage of granulocytes27863252[0.03-0.046] unit decrease0.03822696EFO_0007994
ENSG00000107929rs1226439010913171CSum eosinophil basophil counts27863252[0.038-0.055] unit increase0.04659671EFO_0005090|EFO_0004842
ENSG00000107929rs1276297310914821GBasophil percentage of granulocytes27863252[0.025-0.041] unit increase0.03260451EFO_0007995
ENSG00000107929rs790859010906583?Red blood cell count30595370EFO_0004305
ENSG00000107929rs8028210310853131TEstimated glomerular filtration rate30604766[0.31-0.92] ml/min/1.73m2 decrease0.615EFO_0005208
ENSG00000107929rs1125351110918892?Eosinophil counts30595370EFO_0004842
ENSG00000107929rs14153608710808752GCGCAProstate cancer29892016[1.06-1.11]1.08EFO_0001663
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000107929's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000107929LARP4B8551.515ENSG00000161813LARP49951.515
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000107929LARP4B10055.322ENSAPOG00000020531LARP4B10055.716Acanthochromis_polyacanthus
ENSG00000107929LARP4B10089.474ENSAMEG00000001810LARP4B10085.386Ailuropoda_melanoleuca
ENSG00000107929LARP4B10050.877ENSAOCG00000007887-7984.106Amphiprion_ocellaris
ENSG00000107929LARP4B9657.769ENSAPEG00000002512LARP4B9857.161Amphiprion_percula
ENSG00000107929LARP4B10054.489ENSATEG00000012614LARP4B10055.112Anabas_testudineus
ENSG00000107929LARP4B10074.400ENSAPLG00000003813LARP4B9874.400Anas_platyrhynchos
ENSG00000107929LARP4B10073.431ENSACAG00000002858LARP4B10073.431Anolis_carolinensis
ENSG00000107929LARP4B10098.246ENSANAG00000007531-10096.206Aotus_nancymaae
ENSG00000107929LARP4B10056.538ENSACLG00000026356LARP4B10057.606Astatotilapia_calliptera
ENSG00000107929LARP4B9650.877ENSAMXG00000003335larp4b9750.742Astyanax_mexicanus
ENSG00000107929LARP4B10087.719ENSBTAG00000013899LARP4B10081.646Bos_taurus
ENSG00000107929LARP4B10098.246ENSCJAG00000018434LARP4B10095.393Callithrix_jacchus
ENSG00000107929LARP4B10091.228ENSCAFG00020004209LARP4B10085.656Canis_lupus_dingo
ENSG00000107929LARP4B10092.982ENSCHIG00000013543LARP4B10081.916Capra_hircus
ENSG00000107929LARP4B10088.235ENSTSYG00000002568LARP4B10093.266Carlito_syrichta
ENSG00000107929LARP4B10085.621ENSCAPG00000009725LARP4B9777.840Cavia_aperea
ENSG00000107929LARP4B10091.228ENSCPOG00000009375LARP4B10088.211Cavia_porcellus
ENSG00000107929LARP4B10098.246ENSCCAG00000024869LARP4B10096.070Cebus_capucinus
ENSG00000107929LARP4B100100.000ENSCATG00000019750LARP4B10098.374Cercocebus_atys
ENSG00000107929LARP4B10091.228ENSCLAG00000011570LARP4B10088.498Chinchilla_lanigera
ENSG00000107929LARP4B10079.739ENSCHOG00000007831-6687.903Choloepus_hoffmanni
ENSG00000107929LARP4B10074.232ENSCPBG00000017063LARP4B10074.232Chrysemys_picta_bellii
ENSG00000107929LARP4B100100.000ENSCANG00000038021LARP4B10096.206Colobus_angolensis_palliatus
ENSG00000107929LARP4B10088.243ENSCGRG00001022930Larp4b10088.243Cricetulus_griseus_chok1gshd
ENSG00000107929LARP4B10088.243ENSCGRG00000006022Larp4b10088.243Cricetulus_griseus_crigri
ENSG00000107929LARP4B10053.614ENSCSEG00000007342LARP4B10053.947Cynoglossus_semilaevis
ENSG00000107929LARP4B10055.250ENSCVAG00000008910LARP4B10056.320Cyprinodon_variegatus
ENSG00000107929LARP4B9051.458ENSDARG00000062146larp4b9152.609Danio_rerio
ENSG00000107929LARP4B10083.660ENSDNOG00000045543-10087.097Dasypus_novemcinctus
ENSG00000107929LARP4B10089.474ENSDORG00000009328Larp4b10086.604Dipodomys_ordii
ENSG00000107929LARP4B10082.353ENSETEG00000011249LARP4B9183.448Echinops_telfairi
ENSG00000107929LARP4B10089.474ENSEASG00005019068-10084.844Equus_asinus_asinus
ENSG00000107929LARP4B10089.474ENSECAG00000024040LARP4B10084.844Equus_caballus
ENSG00000107929LARP4B10089.474ENSEEUG00000008391LARP4B9882.075Erinaceus_europaeus
ENSG00000107929LARP4B10055.500ENSELUG00000008626LARP4B10055.875Esox_lucius
ENSG00000107929LARP4B8939.883ENSELUG00000001417-9439.412Esox_lucius
ENSG00000107929LARP4B10091.228ENSFCAG00000000721-10085.425Felis_catus
ENSG00000107929LARP4B10073.965ENSFALG00000006961LARP4B10073.965Ficedula_albicollis
ENSG00000107929LARP4B10091.228ENSFDAG00000006158LARP4B9788.633Fukomys_damarensis
ENSG00000107929LARP4B10051.348ENSFHEG00000013037LARP4B6589.916Fundulus_heteroclitus
ENSG00000107929LARP4B7663.524ENSGMOG00000010818-8963.772Gadus_morhua
ENSG00000107929LARP4B10073.803ENSGALG00000006672LARP4B10073.803Gallus_gallus
ENSG00000107929LARP4B10058.495ENSGACG00000017535LARP4B9858.755Gasterosteus_aculeatus
ENSG00000107929LARP4B10068.182ENSGAGG00000008598LARP4B10076.135Gopherus_agassizii
ENSG00000107929LARP4B100100.000ENSGGOG00000003572LARP4B10099.458Gorilla_gorilla
ENSG00000107929LARP4B10056.040ENSHBUG00000007535LARP4B10056.983Haplochromis_burtoni
ENSG00000107929LARP4B10091.228ENSHGLG00000012936LARP4B10090.685Heterocephalus_glaber_female
ENSG00000107929LARP4B10089.474ENSHGLG00100016220-10089.310Heterocephalus_glaber_male
ENSG00000107929LARP4B9379.245ENSHGLG00100017261-10073.806Heterocephalus_glaber_male
ENSG00000107929LARP4B9954.058ENSHCOG00000011581LARP4B8954.319Hippocampus_comes
ENSG00000107929LARP4B9052.500ENSIPUG00000009705larp4b9152.346Ictalurus_punctatus
ENSG00000107929LARP4B10091.228ENSSTOG00000000587LARP4B10086.081Ictidomys_tridecemlineatus
ENSG00000107929LARP4B10088.889ENSJJAG00000020847Larp4b10088.889Jaculus_jaculus
ENSG00000107929LARP4B10056.250ENSKMAG00000021674LARP4B10057.125Kryptolebias_marmoratus
ENSG00000107929LARP4B8258.631ENSLBEG00000025293-8558.942Labrus_bergylta
ENSG00000107929LARP4B9166.618ENSLACG00000009492LARP4B10066.618Latimeria_chalumnae
ENSG00000107929LARP4B10064.744ENSLOCG00000012290larp4b10065.945Lepisosteus_oculatus
ENSG00000107929LARP4B10084.791ENSLAFG00000015334LARP4B10084.870Loxodonta_africana
ENSG00000107929LARP4B100100.000ENSMFAG00000001766LARP4B10096.477Macaca_fascicularis
ENSG00000107929LARP4B100100.000ENSMMUG00000005279LARP4B10098.645Macaca_mulatta
ENSG00000107929LARP4B100100.000ENSMNEG00000014019LARP4B10096.341Macaca_nemestrina
ENSG00000107929LARP4B100100.000ENSMLEG00000035198LARP4B10098.241Mandrillus_leucophaeus
ENSG00000107929LARP4B10054.421ENSMAMG00000013742LARP4B10055.044Mastacembelus_armatus
ENSG00000107929LARP4B8062.701ENSMZEG00005006498-9662.219Maylandia_zebra
ENSG00000107929LARP4B9157.259ENSMZEG00005014594-10058.424Maylandia_zebra
ENSG00000107929LARP4B10073.298ENSMGAG00000005472LARP4B10073.298Meleagris_gallopavo
ENSG00000107929LARP4B10089.474ENSMAUG00000021657Larp4b10089.631Mesocricetus_auratus
ENSG00000107929LARP4B10083.062ENSMICG00000001301LARP4B10083.062Microcebus_murinus
ENSG00000107929LARP4B10091.228ENSMOCG00000021452Larp4b10089.104Microtus_ochrogaster
ENSG00000107929LARP4B9942.978ENSMMOG00000011253-8961.192Mola_mola
ENSG00000107929LARP4B10072.751ENSMODG00000005957LARP4B10072.751Monodelphis_domestica
ENSG00000107929LARP4B10049.004ENSMALG00000012432LARP4B10050.199Monopterus_albus
ENSG00000107929LARP4B10089.474MGP_CAROLIEiJ_G0018216Larp4b10087.821Mus_caroli
ENSG00000107929LARP4B10087.719ENSMUSG00000033499Larp4b10087.719Mus_musculus
ENSG00000107929LARP4B10087.821MGP_PahariEiJ_G0019266Larp4b10087.821Mus_pahari
ENSG00000107929LARP4B10087.719MGP_SPRETEiJ_G0019074Larp4b10087.584Mus_spretus
ENSG00000107929LARP4B10089.474ENSMPUG00000016220LARP4B9784.709Mustela_putorius_furo
ENSG00000107929LARP4B9482.081ENSMLUG00000005880LARP4B10082.081Myotis_lucifugus
ENSG00000107929LARP4B10094.737ENSNGAG00000001750Larp4b10087.398Nannospalax_galili
ENSG00000107929LARP4B9941.644ENSNBRG00000020018LARP4B8855.769Neolamprologus_brichardi
ENSG00000107929LARP4B10099.237ENSNLEG00000013442LARP4B10098.916Nomascus_leucogenys
ENSG00000107929LARP4B10066.879ENSMEUG00000013114-8370.652Notamacropus_eugenii
ENSG00000107929LARP4B10091.228ENSOPRG00000003300LARP4B10086.309Ochotona_princeps
ENSG00000107929LARP4B10092.982ENSODEG00000001109LARP4B10086.316Octodon_degus
ENSG00000107929LARP4B10058.846ENSONIG00000017705LARP4B10059.359Oreochromis_niloticus
ENSG00000107929LARP4B10072.487ENSOANG00000006100LARP4B10072.619Ornithorhynchus_anatinus
ENSG00000107929LARP4B10087.779ENSOCUG00000004950LARP4B9787.779Oryctolagus_cuniculus
ENSG00000107929LARP4B10054.261ENSORLG00000006080LARP4B10054.511Oryzias_latipes
ENSG00000107929LARP4B10054.125ENSORLG00020020940LARP4B10054.250Oryzias_latipes_hni
ENSG00000107929LARP4B10054.580ENSORLG00015020608LARP4B10054.705Oryzias_latipes_hsok
ENSG00000107929LARP4B10053.066ENSOMEG00000019619LARP4B10053.567Oryzias_melastigma
ENSG00000107929LARP4B10081.699ENSOGAG00000011540LARP4B10084.704Otolemur_garnettii
ENSG00000107929LARP4B10092.982ENSOARG00000015320LARP4B9881.855Ovis_aries
ENSG00000107929LARP4B100100.000ENSPPAG00000039232LARP4B10099.322Pan_paniscus
ENSG00000107929LARP4B10091.228ENSPPRG00000009489LARP4B10085.521Panthera_pardus
ENSG00000107929LARP4B10091.228ENSPTIG00000008543LARP4B10085.386Panthera_tigris_altaica
ENSG00000107929LARP4B100100.000ENSPTRG00000002235LARP4B10099.322Pan_troglodytes
ENSG00000107929LARP4B100100.000ENSPANG00000023546LARP4B10096.477Papio_anubis
ENSG00000107929LARP4B9956.307ENSPKIG00000012368LARP4B9956.454Paramormyrops_kingsleyae
ENSG00000107929LARP4B7684.713ENSPSIG00000005600LARP4B9984.713Pelodiscus_sinensis
ENSG00000107929LARP4B9752.589ENSPMGG00000008261LARP4B9152.589Periophthalmus_magnuspinnatus
ENSG00000107929LARP4B10089.474ENSPEMG00000014052Larp4b10088.618Peromyscus_maniculatus_bairdii
ENSG00000107929LARP4B10054.907ENSPFOG00000000029LARP4B10055.762Poecilia_formosa
ENSG00000107929LARP4B10055.729ENSPLAG00000002871LARP4B10055.990Poecilia_latipinna
ENSG00000107929LARP4B10054.839ENSPMEG00000016361LARP4B10055.693Poecilia_mexicana
ENSG00000107929LARP4B100100.000ENSPPYG00000002035LARP4B9798.782Pongo_abelii
ENSG00000107929LARP4B10091.228ENSPCOG00000014688LARP4B10087.127Propithecus_coquereli
ENSG00000107929LARP4B8588.571ENSPVAG00000009784LARP4B8888.571Pteropus_vampyrus
ENSG00000107929LARP4B10056.484ENSPNYG00000024252LARP4B10057.428Pundamilia_nyererei
ENSG00000107929LARP4B9451.955ENSPNAG00000028956larp4b9551.816Pygocentrus_nattereri
ENSG00000107929LARP4B10089.474ENSRNOG00000015888Larp4b10088.889Rattus_norvegicus
ENSG00000107929LARP4B100100.000ENSRBIG00000033294LARP4B10098.103Rhinopithecus_bieti
ENSG00000107929LARP4B100100.000ENSRROG00000033879LARP4B10097.696Rhinopithecus_roxellana
ENSG00000107929LARP4B100100.000ENSSBOG00000021109LARP4B10090.515Saimiri_boliviensis_boliviensis
ENSG00000107929LARP4B10075.368ENSSHAG00000013392LARP4B10075.368Sarcophilus_harrisii
ENSG00000107929LARP4B9159.052ENSSFOG00015003256LARP4B9057.333Scleropages_formosus
ENSG00000107929LARP4B10052.685ENSSMAG00000005982-9562.131Scophthalmus_maximus
ENSG00000107929LARP4B10056.576ENSSDUG00000006704LARP4B10057.072Seriola_dumerili
ENSG00000107929LARP4B8063.360ENSSLDG00000020660LARP4B9163.116Seriola_lalandi_dorsalis
ENSG00000107929LARP4B10074.510ENSSARG00000001243-7997.170Sorex_araneus
ENSG00000107929LARP4B9079.216ENSSPUG00000013734-9179.216Sphenodon_punctatus
ENSG00000107929LARP4B10071.660ENSSPUG00000002102-10071.660Sphenodon_punctatus
ENSG00000107929LARP4B8570.968ENSSPAG00000014628LARP4B8862.581Stegastes_partitus
ENSG00000107929LARP4B10089.474ENSSSCG00000011162LARP4B10084.704Sus_scrofa
ENSG00000107929LARP4B10074.531ENSTGUG00000000811-10074.531Taeniopygia_guttata
ENSG00000107929LARP4B10056.809ENSTNIG00000004571-9857.458Tetraodon_nigroviridis
ENSG00000107929LARP4B10056.667ENSTNIG00000007991LARP4B9955.897Tetraodon_nigroviridis
ENSG00000107929LARP4B10092.982ENSTTRG00000011151LARP4B9088.353Tursiops_truncatus
ENSG00000107929LARP4B10091.228ENSUAMG00000016461LARP4B9586.957Ursus_americanus
ENSG00000107929LARP4B10089.474ENSUMAG00000016127LARP4B10086.062Ursus_maritimus
ENSG00000107929LARP4B8289.362ENSVPAG00000000128-7394.944Vicugna_pacos
ENSG00000107929LARP4B10091.228ENSVVUG00000008641LARP4B10085.115Vulpes_vulpes
ENSG00000107929LARP4B9968.609ENSXETG00000016882larp4b10068.609Xenopus_tropicalis
ENSG00000107929LARP4B10053.238ENSXCOG00000019952LARP4B10053.238Xiphophorus_couchianus
ENSG00000107929LARP4B10055.125ENSXMAG00000021533LARP4B10055.486Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005515protein binding21988832.25416956.IPIFunction
GO:0005730nucleolus-IDAComponent
GO:0005829cytosol20573744.IDAComponent
GO:0010494cytoplasmic stress granule20573744.IDAComponent
GO:0016020membrane19946888.HDAComponent
GO:0042788polysomal ribosome20573744.IDAComponent
GO:0045727positive regulation of translation20573744.IMPProcess

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