EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Literatures
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSG00000108592 (Gene tree)
Gene ID
117246
Gene Symbol
FTSJ3
Alias
SPB1
Full Name
FtsJ RNA 2'-O-methyltransferase 3
Gene Type
protein_coding
Species
Homo_sapiens
Status
confidence
Strand
Minus strand
Length
10,580 bases
Position
chr17:63,819,433-63,830,012
Accession
17136
RBP type
canonical RBP
Summary
Although the function of this gene is not known, the existence of this gene is supported by mRNA and EST data. A possible function of the encoded protein can be inferred from amino acid sequence similarity to the E.coli FtsJ protein and to a mouse protein possibly involved in embryogenesis. [provided by RefSeq, Jul 2008]
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSP00000396673FtsJPF01728.192.1e-5511
ENSP00000462290FtsJPF01728.191e-3711
ENSP00000464648FtsJPF01728.193.2e-2711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
22681889The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts4SURIC & HEK2932012 MayBaltz AGDOI: 10.1016/j.molcel.2012.05.021
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & HEK2932019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & HEK2932018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
29431736Capturing the interactome of newly transcribed RNANascentRICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNAPolyT-RICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARIC & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
29431736Capturing the interactome of newly transcribed RNARICK & Hela2018 Feb 12Bao XDOI: 10.1038/nmeth.4595
22658674Insights into RNA biology from an atlas of mammalian mRNA-binding proteinsRIC & Hela2012 May 31Castello ADOI: 10.1016/j.cell.2012.04.031
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & Hela2018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & MCF10A2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30528433The Human RNA-Binding Proteome and Its Dynamics during Translational ArrestXRNAX & MCF72018 Dec 6Trendel JDOI: 10.1016/j.cell.2018.11.004
30607034Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)OOPS & U2OS2019 Jan 3Queiroz RMLDOI: 10.1038/s41587-018-0001-2
30352994Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome captureRIC & Jurkat2018 Oct 23Perez-Perri JIDOI:10.1038/s41467-018-06557-8

Literatures on RNA binding capacity
PIDTitleArticle TimeAuthorDoi
30626973FTSJ3 is an RNA 2'-O-methyltransferase recruited by HIV to avoid innate immune sensing.Nature2019 JanRingeard Mdoi: 10.1038/s41586-018-0841-4
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENST00000580290FTSJ3-207597--- (aa)--
ENST00000581209FTSJ3-210592-ENSP00000464648115 (aa)-J3QSE2
ENST00000577263FTSJ3-202598--- (aa)--
ENST00000580376FTSJ3-209575--- (aa)--
ENST00000584574FTSJ3-215543-ENSP0000046436133 (aa)-J3QRS5
ENST00000580272FTSJ3-206615-ENSP00000462290151 (aa)-J3KS36
ENST00000585145FTSJ3-216535-ENSP0000046322919 (aa)-J3QKT6
ENST00000580295FTSJ3-208594--- (aa)--
ENST00000584193FTSJ3-214548-ENSP0000046398040 (aa)-J3QR05
ENST00000582476FTSJ3-211627--- (aa)--
ENST00000583901FTSJ3-213867--- (aa)--
ENST00000583202FTSJ3-212908--- (aa)--
ENST00000580129FTSJ3-205421--- (aa)--
ENST00000579831FTSJ3-204411-ENSP0000046221229 (aa)-J3KRY4
ENST00000579569FTSJ3-203522-ENSP0000046234267 (aa)-J3KS74
ENST00000427159FTSJ3-2013559-ENSP00000396673847 (aa)-Q8IY81
Gene Model
Click here to download ENSG00000108592's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSG00000108592's network

* RBP PPI network refers to all genes directly bind to RBP
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSG00000108592FTSJ38858.621ENSG00000068438FTSJ17438.247
ENSG00000108592FTSJ39040.708ENSG00000122687MRM28432.283
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSG00000108592FTSJ36286.022ENSAPOG00000005543ftsj38368.889Acanthochromis_polyacanthus
ENSG00000108592FTSJ310087.879ENSAPOG00000020885-10089.655Acanthochromis_polyacanthus
ENSG00000108592FTSJ310087.879ENSAPOG00000020856-10089.655Acanthochromis_polyacanthus
ENSG00000108592FTSJ3100100.000ENSAMEG00000003148FTSJ39886.946Ailuropoda_melanoleuca
ENSG00000108592FTSJ310084.848ENSACIG00000012880ftsj39267.778Amphilophus_citrinellus
ENSG00000108592FTSJ310089.565ENSAOCG00000023196ftsj39660.190Amphiprion_ocellaris
ENSG00000108592FTSJ310089.565ENSAPEG00000004250ftsj39759.953Amphiprion_percula
ENSG00000108592FTSJ35786.047ENSATEG00000010069ftsj39658.280Anabas_testudineus
ENSG00000108592FTSJ310087.879ENSATEG00000010084-10089.655Anabas_testudineus
ENSG00000108592FTSJ38278.836ENSAPLG00000010362-9859.114Anas_platyrhynchos
ENSG00000108592FTSJ38668.000ENSACAG00000017930FTSJ39863.844Anolis_carolinensis
ENSG00000108592FTSJ3100100.000ENSANAG00000033774FTSJ39894.005Aotus_nancymaae
ENSG00000108592FTSJ310088.696ENSACLG00000019137ftsj39768.539Astatotilapia_calliptera
ENSG00000108592FTSJ310087.879ENSAMXG00000021571ftsj39461.321Astyanax_mexicanus
ENSG00000108592FTSJ310098.261ENSBTAG00000021060FTSJ39888.024Bos_taurus
ENSG00000108592FTSJ3100100.000ENSCJAG00000019631FTSJ39892.326Callithrix_jacchus
ENSG00000108592FTSJ3100100.000ENSCAFG00000012770FTSJ39887.128Canis_familiaris
ENSG00000108592FTSJ3100100.000ENSCAFG00020026630FTSJ39886.962Canis_lupus_dingo
ENSG00000108592FTSJ310098.261ENSCHIG00000025676FTSJ39888.623Capra_hircus
ENSG00000108592FTSJ39582.156ENSTSYG00000001393FTSJ39781.864Carlito_syrichta
ENSG00000108592FTSJ39088.462ENSCAPG00000016654FTSJ37596.347Cavia_aperea
ENSG00000108592FTSJ3100100.000ENSCPOG00000011384FTSJ39886.022Cavia_porcellus
ENSG00000108592FTSJ3100100.000ENSCCAG00000023533-9795.113Cebus_capucinus
ENSG00000108592FTSJ3100100.000ENSCATG00000018510FTSJ39895.341Cercocebus_atys
ENSG00000108592FTSJ3100100.000ENSCLAG00000003222FTSJ39888.144Chinchilla_lanigera
ENSG00000108592FTSJ3100100.000ENSCSAG00000003921FTSJ39895.683Chlorocebus_sabaeus
ENSG00000108592FTSJ3100100.000ENSCHOG00000012352-5999.301Choloepus_hoffmanni
ENSG00000108592FTSJ310094.737ENSCPBG00000010032FTSJ39482.759Chrysemys_picta_bellii
ENSG00000108592FTSJ310075.758ENSCSAVG00000003607-6857.053Ciona_savignyi
ENSG00000108592FTSJ3100100.000ENSCANG00000042921FTSJ39895.683Colobus_angolensis_palliatus
ENSG00000108592FTSJ3100100.000ENSCGRG00001018068FTSJ39885.851Cricetulus_griseus_chok1gshd
ENSG00000108592FTSJ3100100.000ENSCGRG00000010648FTSJ39885.851Cricetulus_griseus_crigri
ENSG00000108592FTSJ310087.879ENSCSEG00000013468ftsj39658.019Cynoglossus_semilaevis
ENSG00000108592FTSJ310087.879ENSCVAG00000007484ftsj39760.979Cyprinodon_variegatus
ENSG00000108592FTSJ310088.696ENSDARG00000104938ftsj39761.190Danio_rerio
ENSG00000108592FTSJ3100100.000ENSDNOG00000002392FTSJ39885.765Dasypus_novemcinctus
ENSG00000108592FTSJ3100100.000ENSDORG00000004200Ftsj39887.410Dipodomys_ordii
ENSG00000108592FTSJ310081.818FBgn0030720CG89399838.787Drosophila_melanogaster
ENSG00000108592FTSJ3100100.000ENSETEG00000019228FTSJ39885.066Echinops_telfairi
ENSG00000108592FTSJ310093.939ENSEBUG00000007828ftsj39751.297Eptatretus_burgeri
ENSG00000108592FTSJ3100100.000ENSEASG00005013565FTSJ39888.769Equus_asinus_asinus
ENSG00000108592FTSJ3100100.000ENSECAG00000011995FTSJ39889.128Equus_caballus
ENSG00000108592FTSJ310087.879ENSELUG00000013501ftsj39558.167Esox_lucius
ENSG00000108592FTSJ3100100.000ENSFCAG00000013983FTSJ39887.170Felis_catus
ENSG00000108592FTSJ310089.565ENSFALG00000013635FTSJ39967.811Ficedula_albicollis
ENSG00000108592FTSJ3100100.000ENSFDAG00000010274FTSJ39885.731Fukomys_damarensis
ENSG00000108592FTSJ310088.696ENSFHEG00000007639ftsj39761.071Fundulus_heteroclitus
ENSG00000108592FTSJ310084.848ENSGMOG00000017184ftsj310071.005Gadus_morhua
ENSG00000108592FTSJ310094.737ENSGALG00000032993FTSJ39969.431Gallus_gallus
ENSG00000108592FTSJ310087.879ENSGAFG00000016316-10089.655Gambusia_affinis
ENSG00000108592FTSJ310090.909ENSGACG00000009841ftsj310071.897Gasterosteus_aculeatus
ENSG00000108592FTSJ310090.909ENSGAGG00000006236FTSJ39970.167Gopherus_agassizii
ENSG00000108592FTSJ3100100.000ENSGGOG00000006794FTSJ310098.465Gorilla_gorilla
ENSG00000108592FTSJ310088.696ENSHBUG00000022331ftsj39661.190Haplochromis_burtoni
ENSG00000108592FTSJ3100100.000ENSHGLG00000012282FTSJ39886.005Heterocephalus_glaber_female
ENSG00000108592FTSJ3100100.000ENSHGLG00100003578FTSJ39886.005Heterocephalus_glaber_male
ENSG00000108592FTSJ310087.879ENSHCOG00000018770ftsj39661.775Hippocampus_comes
ENSG00000108592FTSJ310087.879ENSIPUG00000024942ftsj39460.570Ictalurus_punctatus
ENSG00000108592FTSJ3100100.000ENSSTOG00000021265FTSJ39888.024Ictidomys_tridecemlineatus
ENSG00000108592FTSJ3100100.000ENSJJAG00000012822Ftsj39886.930Jaculus_jaculus
ENSG00000108592FTSJ310088.696ENSKMAG00000021997ftsj39660.095Kryptolebias_marmoratus
ENSG00000108592FTSJ310087.879ENSLBEG00000027142ftsj39658.588Labrus_bergylta
ENSG00000108592FTSJ37290.476ENSLACG00000005523FTSJ39849.020Latimeria_chalumnae
ENSG00000108592FTSJ310089.565ENSLOCG00000008979ftsj39861.210Lepisosteus_oculatus
ENSG00000108592FTSJ3100100.000ENSLAFG00000003252FTSJ39888.397Loxodonta_africana
ENSG00000108592FTSJ3100100.000ENSMFAG00000003764FTSJ39895.928Macaca_fascicularis
ENSG00000108592FTSJ3100100.000ENSMMUG00000016768FTSJ39890.288Macaca_mulatta
ENSG00000108592FTSJ3100100.000ENSMNEG00000029254FTSJ39895.933Macaca_nemestrina
ENSG00000108592FTSJ3100100.000ENSMLEG00000029091FTSJ39895.928Mandrillus_leucophaeus
ENSG00000108592FTSJ310088.696ENSMZEG00005001992ftsj39661.667Maylandia_zebra
ENSG00000108592FTSJ310089.565ENSMGAG00000000953FTSJ39965.711Meleagris_gallopavo
ENSG00000108592FTSJ3100100.000ENSMAUG00000015688Ftsj39885.868Mesocricetus_auratus
ENSG00000108592FTSJ3100100.000ENSMICG00000045996FTSJ39890.887Microcebus_murinus
ENSG00000108592FTSJ3100100.000ENSMOCG00000017809Ftsj39885.252Microtus_ochrogaster
ENSG00000108592FTSJ310087.879ENSMMOG00000019522ftsj38956.943Mola_mola
ENSG00000108592FTSJ3100100.000ENSMODG00000009901FTSJ39878.323Monodelphis_domestica
ENSG00000108592FTSJ310087.879ENSMALG00000017412-10089.655Monopterus_albus
ENSG00000108592FTSJ3100100.000MGP_CAROLIEiJ_G0017315Ftsj39887.050Mus_caroli
ENSG00000108592FTSJ3100100.000ENSMUSG00000020706Ftsj39887.170Mus_musculus
ENSG00000108592FTSJ3100100.000MGP_PahariEiJ_G0018445Ftsj39887.650Mus_pahari
ENSG00000108592FTSJ3100100.000MGP_SPRETEiJ_G0018159Ftsj39886.930Mus_spretus
ENSG00000108592FTSJ3100100.000ENSMPUG00000014911FTSJ39886.707Mustela_putorius_furo
ENSG00000108592FTSJ3100100.000ENSMLUG00000011667FTSJ39889.940Myotis_lucifugus
ENSG00000108592FTSJ3100100.000ENSNGAG00000005899Ftsj39886.091Nannospalax_galili
ENSG00000108592FTSJ310088.696ENSNBRG00000017453ftsj39769.101Neolamprologus_brichardi
ENSG00000108592FTSJ3100100.000ENSNLEG00000004188FTSJ310097.048Nomascus_leucogenys
ENSG00000108592FTSJ3100100.000ENSMEUG00000013252FTSJ39873.892Notamacropus_eugenii
ENSG00000108592FTSJ3100100.000ENSOPRG00000014985FTSJ39885.238Ochotona_princeps
ENSG00000108592FTSJ3100100.000ENSODEG00000008167FTSJ39886.571Octodon_degus
ENSG00000108592FTSJ310089.565ENSONIG00000001654ftsj39660.071Oreochromis_niloticus
ENSG00000108592FTSJ3100100.000ENSOCUG00000004319FTSJ39884.671Oryctolagus_cuniculus
ENSG00000108592FTSJ310087.879ENSORLG00000005910ftsj39661.183Oryzias_latipes
ENSG00000108592FTSJ310087.879ENSORLG00020021255ftsj38971.023Oryzias_latipes_hni
ENSG00000108592FTSJ310087.879ENSORLG00015018416ftsj39661.256Oryzias_latipes_hsok
ENSG00000108592FTSJ310087.879ENSOMEG00000014432ftsj39661.639Oryzias_melastigma
ENSG00000108592FTSJ3100100.000ENSOGAG00000032479FTSJ39890.887Otolemur_garnettii
ENSG00000108592FTSJ310098.261ENSOARG00000013637FTSJ39888.144Ovis_aries
ENSG00000108592FTSJ3100100.000ENSPPAG00000027297FTSJ310099.292Pan_paniscus
ENSG00000108592FTSJ3100100.000ENSPPRG00000003042FTSJ39887.050Panthera_pardus
ENSG00000108592FTSJ3100100.000ENSPTIG00000012576FTSJ39886.174Panthera_tigris_altaica
ENSG00000108592FTSJ3100100.000ENSPTRG00000009524FTSJ310099.528Pan_troglodytes
ENSG00000108592FTSJ3100100.000ENSPANG00000020978FTSJ39895.689Papio_anubis
ENSG00000108592FTSJ310087.879ENSPKIG00000012838ftsj39662.130Paramormyrops_kingsleyae
ENSG00000108592FTSJ39685.517ENSPSIG00000004632FTSJ36785.870Pelodiscus_sinensis
ENSG00000108592FTSJ310084.848ENSPMGG00000012959ftsj39365.445Periophthalmus_magnuspinnatus
ENSG00000108592FTSJ3100100.000ENSPEMG00000000248Ftsj39886.811Peromyscus_maniculatus_bairdii
ENSG00000108592FTSJ3100100.000ENSPCIG00000009088FTSJ39876.457Phascolarctos_cinereus
ENSG00000108592FTSJ310088.696ENSPFOG00000023101ftsj39760.854Poecilia_formosa
ENSG00000108592FTSJ310087.879ENSPLAG00000003846ftsj39760.735Poecilia_latipinna
ENSG00000108592FTSJ310088.696ENSPMEG00000012692ftsj39760.973Poecilia_mexicana
ENSG00000108592FTSJ310088.696ENSPREG00000014874ftsj39760.306Poecilia_reticulata
ENSG00000108592FTSJ3100100.000ENSPPYG00000008532FTSJ310094.569Pongo_abelii
ENSG00000108592FTSJ3100100.000ENSPCAG00000002560FTSJ39884.192Procavia_capensis
ENSG00000108592FTSJ3100100.000ENSPCOG00000023921FTSJ39890.647Propithecus_coquereli
ENSG00000108592FTSJ3100100.000ENSPVAG00000000162FTSJ39888.729Pteropus_vampyrus
ENSG00000108592FTSJ310088.696ENSPNYG00000005108ftsj39867.213Pundamilia_nyererei
ENSG00000108592FTSJ38686.154ENSPNAG00000022474ftsj39459.927Pygocentrus_nattereri
ENSG00000108592FTSJ3100100.000ENSRNOG00000009857Ftsj39985.252Rattus_norvegicus
ENSG00000108592FTSJ3100100.000ENSRBIG00000039259FTSJ39895.204Rhinopithecus_bieti
ENSG00000108592FTSJ3100100.000ENSRROG00000045002FTSJ39895.204Rhinopithecus_roxellana
ENSG00000108592FTSJ3100100.000ENSSBOG00000031794FTSJ39293.405Saimiri_boliviensis_boliviensis
ENSG00000108592FTSJ3100100.000ENSSHAG00000013062FTSJ39877.658Sarcophilus_harrisii
ENSG00000108592FTSJ310087.879ENSSFOG00015018053ftsj39761.337Scleropages_formosus
ENSG00000108592FTSJ310087.879ENSSMAG00000002863ftsj39658.678Scophthalmus_maximus
ENSG00000108592FTSJ310088.696ENSSDUG00000003385ftsj39560.476Seriola_dumerili
ENSG00000108592FTSJ310087.879ENSSLDG00000017970ftsj39559.167Seriola_lalandi_dorsalis
ENSG00000108592FTSJ3100100.000ENSSARG00000009874-5795.960Sorex_araneus
ENSG00000108592FTSJ3100100.000ENSSARG00000014326-58100.000Sorex_araneus
ENSG00000108592FTSJ3100100.000ENSSPUG00000012959FTSJ39967.427Sphenodon_punctatus
ENSG00000108592FTSJ310088.696ENSSPAG00000002390ftsj39659.220Stegastes_partitus
ENSG00000108592FTSJ3100100.000ENSSSCG00000017288FTSJ39887.440Sus_scrofa
ENSG00000108592FTSJ310090.909ENSTRUG00000017550ftsj38869.318Takifugu_rubripes
ENSG00000108592FTSJ310090.909ENSTNIG00000015549ftsj39859.264Tetraodon_nigroviridis
ENSG00000108592FTSJ3100100.000ENSTBEG00000010295FTSJ39881.916Tupaia_belangeri
ENSG00000108592FTSJ3100100.000ENSTTRG00000006973FTSJ39886.842Tursiops_truncatus
ENSG00000108592FTSJ3100100.000ENSUAMG00000007332FTSJ39498.507Ursus_americanus
ENSG00000108592FTSJ3100100.000ENSUMAG00000017450FTSJ39886.587Ursus_maritimus
ENSG00000108592FTSJ3100100.000ENSVPAG00000009634-50100.000Vicugna_pacos
ENSG00000108592FTSJ3100100.000ENSVVUG00000006106FTSJ39886.858Vulpes_vulpes
ENSG00000108592FTSJ38582.946ENSXETG00000006939ftsj39957.401Xenopus_tropicalis
ENSG00000108592FTSJ310087.879ENSXMAG00000018139ftsj39658.935Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000453enzyme-directed rRNA 2'-O-methylation-IEAProcess
GO:0000463maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)21873635.IBAProcess
GO:0000466maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)21873635.IBAProcess
GO:0003723RNA binding22658674.22681889.HDAFunction
GO:0005515protein binding21903422.IPIFunction
GO:0005634nucleus-IDAComponent
GO:0005730nucleolus21873635.IBAComponent
GO:0005730nucleolus-IDAComponent
GO:0008650rRNA (uridine-2'-O-)-methyltransferase activity21873635.IBAFunction
GO:0016435rRNA (guanine) methyltransferase activity21873635.IBAFunction
GO:0030687preribosome, large subunit precursor21873635.IBAComponent
GO:0030688preribosome, small subunit precursor-IEAComponent
GO:0031167rRNA methylation21873635.IBAProcess

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