EuRBPDB

Description

Ensembl ID: ENSG00000109171 (Gene tree)
Gene ID: 57606
Gene Symbol: SLAIN2
Alias: FLJ21611|KIAA1458
Full Name: SLAIN motif family member 2
Gene Type: protein_coding
Species: Homo_sapiens
Status: putative
Strand: Plus strand
Length: 84,891 bases
Position: chr4:48,341,322-48,426,212
Accession: 29282
RBP type: non-canonical RBP
Summary: (SLAIN Motif Family Member 2) is a Protein Coding gene. An important paralog of this gene is SLAIN1.

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & MCF10A	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2
30607034	Comprehensive identification of RNA protein interactions in any organism using orthogonal organic phase separation (OOPS)	OOPS & U2OS	2019 Jan 3	Queiroz RML	DOI: 10.1038/s41587-018-0001-2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENST00000505131	SLAIN2-202	588	-	ENSP00000426744	58 (aa)	-	D6REM5
ENST00000512093	SLAIN2-205	4219	-	ENSP00000425923	414 (aa)	-	D6RIF6
ENST00000264313	SLAIN2-201	6299	XM_005248121	ENSP00000264313	581 (aa)	XP_005248178	Q9P270
ENST00000506375	SLAIN2-203	349	-	-	- (aa)	-	-
ENST00000510595	SLAIN2-204	550	-	ENSP00000424473	169 (aa)	-	H0Y9L2

Gene Model

Phenotypes

ensgID	Trait	pValue	Pubmed ID
ENSG00000109171	Inflammatory Bowel Diseases	9E-7	26192919
ENSG00000109171	Schizophrenia	5E-6	26198764
ENSG00000109171	Crohn Disease	2E-8	23128233
ENSG00000109171	Crohn Disease	3E-11	26192919

GWAS

ensgID	SNP	Chromosome	Position	SNP-risk	Trait	PubmedID	95% CI	Or or BEAT	EFO ID
ENSG00000109171	rs7438704	4	48361228	A	Crohn's disease	26192919		1.0875221	EFO_0000384
ENSG00000109171	rs7438704	4	48361228	G	Inflammatory bowel disease	26192919		1.0524054	EFO_0003767
ENSG00000109171	rs6837335	4	48361966	G	Crohn's disease	23128233	[1.049-1.123]	1.086	EFO_0000384
ENSG00000109171	rs551980034	4	48374339	T	Uterine fibroids	30194396	[2.05-3.57]	2.71	EFO_0000731

Protein-Protein Interaction (PPI)

* RBP PPI network refers to all genes directly bind to RBP

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	21646404.26496610.	IPI	Function
GO:0005813	centrosome	21399614.	IDA	Component
GO:0005829	cytosol	-	IDA	Component
GO:0007020	microtubule nucleation	21646404.	IMP	Process
GO:0015630	microtubule cytoskeleton	21646404.	IDA	Component
GO:0031116	positive regulation of microtubule polymerization	21646404.	IMP	Process
GO:0031122	cytoplasmic microtubule organization	21646404.	IMP	Process
GO:0035371	microtubule plus-end	21646404.	IDA	Component